BAC Information

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BAC

Clone NameB6Ng01-246O12
Chromosome1 (Build37)11 (Build37)
Map Location 3,922,894 - 3,924,10493,922,530 - 93,922,577
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneXkr4, LOC100038975, LOC664792
Downstream geneLOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246O12.bB6Ng01-246O12.g
ACCGA055391GA055392
length1,188724
definitionB6Ng01-246O12.b B6Ng01-246O12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,922,894 - 3,924,104)(93,922,530 - 93,922,577)
sequence
gaattctgaggagaagatagaaaaatgtggacaagaaattaagaaataaa
aacaaacaaaataaaaacaaaacaaaacaaaaaacccacagaatgagaaa
tgacactgccccaaatgtacattggcagttaaattcacaacttcctggta
ctgccctgtgtagtctcaccttggtatcccaaccttttcattatggaagg
gaggaccctttttttccttactatttgtaatcacctcacaaaatcatgga
accttctcagcagacagctagcgtcaatgttggaactttggtaatcatac
cgtgtaaaagcttcttgagatccaattataaccatttacccacattagca
ttttcacaactttctcctttgtctacacaaatctaataccatgtctaaag
cattaatacatgtgaggcagatcatttttatcagcaaccagcagagaacc
ctagaatggtttgactactttgtgctctgtaagacttaactcaatgcacc
ttcaaaaatcattattacccctgctttccaagtaagaaaagtgaggctct
gaccactgagaagcatgcccaagaccacagcacttctcaacaatagtcag
gagtctaagtcttgcatgtgtggtcttgctttgatgcagaatccatgttg
aacctattatatggcgagtctttgggggagaaagaagagaagacaagtcc
tgcctactgcctcatattttgggaaaatcctaattggaagtgtaggagat
ttagccaggtagtggtggcatactcttttaatcccagcacttgggaggca
gaggcaagcagatctctataagtttgagaccagcctggtctatatagcaa
gctcaaggacagtcaaggatacacaaagaaatcctgtcttgaaaaacaag
caaacaaacaaaaaggagtaggagatttggtgtctggaaggagttgagtc
tcctctaaaggattttttgttgttttctggtcaatggtgtataaacctat
ctgatgggggaaaaacttctattaatatacatcatactttgtcgatctca
agctattaatagaacaaacagtctttcaggatttacatctctgaaatgct
ttccttggattataggtgacttgcaatgaatccttgtatagtatactttc
tagtctgtctaacactgttaacctcagtttcattgtat

gaattctcacctgagttaataccgaatggcagagaagcacttgaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt
gggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaactggacatagtactaccggaggatccagcaatacctctcctggg
catatatccagaagatgccccaacaggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacctaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttatggaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
agaaactcacacaatatgtattcactgataagtggatattagccccaaac
ctaggatacccaagatataagatttaatttgctaaacacatgaaactcaa
agagaatgaagactgaagtgtggacactatgcccctccttagattttggg
aacaaaacacccatggaaggagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_3922894_3924104
seq2: B6Ng01-246O12.b_52_1239

seq1  GAATTCTGAGGAGAAGATAGAAAAATGTGGACAAGAAATTAAGAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGAGAAGATAGAAAAATGTGGACAAGAAATTAAGAAATAAA  50

seq1  AACAAACAAAATAAAAACAAAACAAAACAAAAAACCCACAGAATGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAATAAAAACAAAACAAAACAAAAAACCCACAGAATGAGAAA  100

seq1  TGACACTGCCCCAAATGTACATTGGCAGTTAAATTCACAACTTCCTGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGCCCCAAATGTACATTGGCAGTTAAATTCACAACTTCCTGGTA  150

seq1  CTGCCCTGTGTAGTCTCACCTTGGTATCCCAACCTTTTCATTATGGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGTGTAGTCTCACCTTGGTATCCCAACCTTTTCATTATGGAAGG  200

seq1  GAGGACCCTTTTTTTCCTTACTATTTGTAATCACCTCACAAAATCATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCCTTTTTTTCCTTACTATTTGTAATCACCTCACAAAATCATGGA  250

seq1  ACCTTCTCAGCAGACAGCTAGCGTCAATGTTGGAACTTTGGTAATCATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTCAGCAGACAGCTAGCGTCAATGTTGGAACTTTGGTAATCATAC  300

seq1  CGTGTAAAAGCTTCTTGAGATCCAATTATAACCATTTACCCACATTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTAAAAGCTTCTTGAGATCCAATTATAACCATTTACCCACATTAGCA  350

seq1  TTTTCACAACTTTCTCCTTTGTCTACACAAATCTAATACCATGTCTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAACTTTCTCCTTTGTCTACACAAATCTAATACCATGTCTAAAG  400

seq1  CATTAATACATGTGAGGCAGATCATTTTTATCAGCAACCAGCAGAGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATACATGTGAGGCAGATCATTTTTATCAGCAACCAGCAGAGAACC  450

seq1  CTAGAATGGTTTGACTACTTTGTGCTCTGTAAGACTTAACTCAATGCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATGGTTTGACTACTTTGTGCTCTGTAAGACTTAACTCAATGCACC  500

seq1  TTCAAAAATCATTATTACCCCTGCTTTCCAAGTAAGAAAAGTGAGGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAATCATTATTACCCCTGCTTTCCAAGTAAGAAAAGTGAGGCTCT  550

seq1  GACCACTGAGAAGCATGCCCAAGACCACAGCACTTCTCAACAATAGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTGAGAAGCATGCCCAAGACCACAGCACTTCTCAACAATAGTCAG  600

seq1  GAGTCTAAGTCTTGCATGTGTGGTCTTGCTTTGATGCAGAATCCATGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTAAGTCTTGCATGTGTGGTCTTGCTTTGATGCAGAATCCATGTTG  650

seq1  AACCTATTATATGGCGAGTCTTTGGGGGAGAAAGAAGAGAAGACAAGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATTATATGGCGAGTCTTTGGGGGAGAAAGAAGAGAAGACAAGTCC  700

seq1  TGCCTACTGCCTCATATTTTGGGAAAATCCTAATTGGAAGTGTAGGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACTGCCTCATATTTTGGGAAAATCCTAATTGGAAGTGTAGGAGAT  750

seq1  TTAGCCAGGTAGTGGTGGCATACTCTTTTAATCCCAGCACTTGGGAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCAGGTAGTGGTGGCATACTCTTTTAATCCCAGCACTTGGGAGGCA  800

seq1  GAGGCAAGCAGATCTCTATAAGTTTGAGACCAGCCTGGTCTATATAGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGCAGATCTCTATAAGTTTGAGACCAGCCTGGTCTATATAGCAA  850

seq1  GCTCAAGGACAGTCAAGGATACACAAAGAAATCCTGTCTTGAAAAACAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGGACAGTCAAGGATACACAAAGAAATCCTGTCTTGAAAAACAAG  900

seq1  CAAACAAACAAAAAGGAGTAGGAGATTTGGTGTCTGGAAGGAGTTGAGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAAAGGAGTAGGAGATTTGGTGTCTGGAAGGAGTTGAGTC  950

seq1  TCCTCTAAAGGATTTTTTGTTGTTTTCTGGTCAATGGTGTATAAACCTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAAAGGATTTTTTGTTGTTTTCTGGTCAATGGTGTATAAACCTAT  1000

seq1  CTGAATGGGGGAAAAACTTCTATTAATAATTAACAATCCATACTTTTGGT  1050
      ||| ||||||||||||||||||||||||    |||   ||||||||    
seq2  CTG-ATGGGGGAAAAACTTCTATTAATA---TACA--TCATACTTT---G  1041

seq1  TCGATCTCAAGCTA-TAATAG-ACAAACAGTTCTTTCAGGGGATTTACAT  1098
      |||||||||||||| |||||| |||||||| |||||||  ||||||||||
seq2  TCGATCTCAAGCTATTAATAGAACAAACAG-TCTTTCA--GGATTTACAT  1088

seq1  CTCTGAGATGCTTTCTTTGTATTATA-GTGACTTTCCCATGGTATTCTTG  1147
      |||||| |||||||| ||| |||||| |||||||   ||  | || ||||
seq2  CTCTGAAATGCTTTCCTTGGATTATAGGTGACTT--GCAATGAATCCTTG  1136

seq1  TATTAGTTATACTTTCTTAGTCTGTTTTCTTTTATACAACTGTTTACCCT  1197
      || ||| ||||||||| |||||||        | ||  |||| ||| |||
seq2  TA-TAG-TATACTTTC-TAGTCTG--------TCTAACACTG-TTAACCT  1174

seq1  CAGTTTCATTGTAT  1211
      ||||||||||||||
seq2  CAGTTTCATTGTAT  1188


seq1: chr11_93922530_93922577
seq2: B6Ng01-246O12.g_752_800 (reverse)

seq1  AACTCCTTCCATGGGTGTTTTGTTCCC-AATTCTAAGGAGGGGCATAGT  48
      ||||||||||||||||||||||||||| || ||||||||||||||||||
seq2  AACTCCTTCCATGGGTGTTTTGTTCCCAAAATCTAAGGAGGGGCATAGT  49


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