BAC Information

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BAC

Clone NameB6Ng01-247G24
Chromosome11 (Build37)
Map Location 3,928,934 - 4,088,620
singlet/doubletdoublet
Overlap geneSec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1
Downstream gene2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247G24.bB6Ng01-247G24.g
ACCGA055773GA055774
length1,076344
definitionB6Ng01-247G24.b B6Ng01-247G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,928,934 - 3,930,004)(4,088,277 - 4,088,620)
sequence
gaattctttgtcgctacctcccagattctaatattgcaggtggaaggctg
tgcaatgttttcttatgaaacaggctctcggatggagggtttagctcagt
ggtaaagccactaccaaacatgcacaaggctctgaggtctagttctttgt
ttgtttgtttatttctttactgaataaatgcgttgtcttcttgtatgact
gtgctccacatatgtgcctggtgcctgctggagccaaaagatagcaacaa
atcccatgggactggagttacagatggctgtgaatcaccatgtgggtgct
ggaaactgaacccaggtcttttggaagagcaaccctgttcttaattgccg
agccatcatctttaggctctggtttatttatttttatttgatgtgtatga
atgttttgtctgcacatgtgtgtgggtagtatggagcccaggaactttca
atcctcccacttcagcctcccaattacactggaattacagtagtgtgcca
ccacacactgcttagtagctgcatttaaatatatatatatgtatgtatgt
ttgtgtctctgagtgtgtgtgcaccatgtgatgtaatgccccagaaggcc
agaagagggcgtcagatcacctggacctgaagttacagccggttgtgagc
ttcctgagagatgctgctggatgagtctgggcttctgggagagccacaag
tgctctgaagcaccgcgtcacctctccaggcccaggaacctggattctca
aaggggagaaagaataagcagaacatagagggtttgtaggtcagtgaaaa
tattccctctgaaaccacagccagggacatgtccttttacagttcttaac
ccctactgactcctaaactgccttagagaagaaaatctatcgattacaaa
ataggccttttcattccagcactcacgaggcagaggcaggaggatctctg
ggtttaaggtcagcctggttctacacagtgagtttccaggttggcaaggg
cctgcgttagtgagaccctgtttcaaaaaatacaaactatgaaaaaataa
attaaatgcacttttgtgcgagtcca
ctttcccaccccctcaagacctcacccttcctgggcccctgatccctgag
gaagggcccaggaagggtccctgatgatcttgccccaactgaaacacagc
ctaaaccctctctctaggttcccacaagctcatacagggtgaaaggtgag
aatgagggcttctcctggttctgaactggaccaggcttagtctaatgtga
gcaagaaagaaaggttggaagagacagatccagtgggtgggaggaaacat
aggtcagaggcctggatttaaaattttctccttctaaggaggaggaggcc
tcgtgaataagagactcttggggagggagggtgatatggtggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3928934_3930004
seq2: B6Ng01-247G24.b_50_1125

seq1  GAATTCTTTGTCGCTACCTCCCAGATTCTAATATTGCAGGTGGAAGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCGCTACCTCCCAGATTCTAATATTGCAGGTGGAAGGCTG  50

seq1  TGCAATGTTTTCTTATGAAACAGGCTCTCGGATGGAGGGTTTAGCTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGTTTTCTTATGAAACAGGCTCTCGGATGGAGGGTTTAGCTCAGT  100

seq1  GGTAAAGCCACTACCAAACATGCACAAGGCTCTGAGGTCTAGTTCTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGCCACTACCAAACATGCACAAGGCTCTGAGGTCTAGTTCTTTGT  150

seq1  TTGTTTGTTTATTTCTTTACTGAATAAATGCGTTGTCTTCTTGTATGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTATTTCTTTACTGAATAAATGCGTTGTCTTCTTGTATGACT  200

seq1  GTGCTCCACATATGTGCCTGGTGCCTGCTGGAGCCAAAAGATAGCAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCACATATGTGCCTGGTGCCTGCTGGAGCCAAAAGATAGCAACAA  250

seq1  ATCCCATGGGACTGGAGTTACAGATGGCTGTGAATCACCATGTGGGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATGGGACTGGAGTTACAGATGGCTGTGAATCACCATGTGGGTGCT  300

seq1  GGAAACTGAACCCAGGTCTTTTGGAAGAGCAACCCTGTTCTTAATTGCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTGAACCCAGGTCTTTTGGAAGAGCAACCCTGTTCTTAATTGCCG  350

seq1  AGCCATCATCTTTAGGCTCTGGTTTATTTATTTTTATTTGATGTGTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCATCTTTAGGCTCTGGTTTATTTATTTTTATTTGATGTGTATGA  400

seq1  ATGTTTTGTCTGCACATGTGTGTGGGTAGTATGGAGCCCAGGAACTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGTCTGCACATGTGTGTGGGTAGTATGGAGCCCAGGAACTTTCA  450

seq1  ATCCTCCCACTTCAGCCTCCCAATTACACTGGAATTACAGTAGTGTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCCACTTCAGCCTCCCAATTACACTGGAATTACAGTAGTGTGCCA  500

seq1  CCACACACTGCTTAGTAGCTGCATTTAAATATATATATATGTATGTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACTGCTTAGTAGCTGCATTTAAATATATATATATGTATGTATGT  550

seq1  TTGTGTCTCTGAGTGTGTGTGCACCATGTGATGTAATGCCCCAGAAGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTCTGAGTGTGTGTGCACCATGTGATGTAATGCCCCAGAAGGCC  600

seq1  AGAAGAGGGCGTCAGATCACCTGGACCTGAAGTTACAGCCGGTTGTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGGCGTCAGATCACCTGGACCTGAAGTTACAGCCGGTTGTGAGC  650

seq1  TTCCTGAGAGATGCTGCTGGATGAGTCTGGGCTTCTGGGAGAGCCACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGAGATGCTGCTGGATGAGTCTGGGCTTCTGGGAGAGCCACAAG  700

seq1  TGCTCTGAAGCACCGCGTCACCTCTCCAGGCCCAGGAACCTGGATTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGAAGCACCGCGTCACCTCTCCAGGCCCAGGAACCTGGATTCTCA  750

seq1  AAGGGGAGAAAGAATAAGCAGAACATAGAGGGTTTGTAGGTCAGTGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAGAAAGAATAAGCAGAACATAGAGGGTTTGTAGGTCAGTGAAAA  800

seq1  TATTCCCTCTGAAACCACAGCCAGGGACATGTCCTTTTACAGTTCTTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCTCTGAAACCACAGCCAGGGACATGTCCTTTTACAGTTCTTAAC  850

seq1  CCCTACTGACTCCTAAAACTGCCTTAGAGAAGAAAATCTATCGATTACAA  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCTACTGACTCCT-AAACTGCCTTAGAGAAGAAAATCTATCGATTACAA  899

seq1  AATAGGCC-TTTCATTCCAGCACTCACGAGGCAGAGGCAGGAGGATCTCT  949
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCCTTTTCATTCCAGCACTCACGAGGCAGAGGCAGGAGGATCTCT  949

seq1  GGGTTTAAGGTCAGCCTGG-TCTACACAGTGAG-TTCCAGGTTGGCAAGG  997
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  GGGTTTAAGGTCAGCCTGGTTCTACACAGTGAGTTTCCAGGTTGGCAAGG  999

seq1  G-CTGCG-TAGTGAGACCCTGTTTCAAAAAATAAAAACTATGAAAAAATA  1045
      | ||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  GCCTGCGTTAGTGAGACCCTGTTTCAAAAAATACAAACTATGAAAAAATA  1049

seq1  AAATAAATGCAC-TTTGTGCGAGTCCA  1071
      || ||||||||| ||||||||||||||
seq2  AATTAAATGCACTTTTGTGCGAGTCCA  1076

seq1: chr11_4088277_4088620
seq2: B6Ng01-247G24.g_73_416 (reverse)

seq1  TTCCACCATATCACCCTCCCTCCCCAAGAGTCTCTTATTCACGAGGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCATATCACCCTCCCTCCCCAAGAGTCTCTTATTCACGAGGCCTC  50

seq1  CTCCTCCTTAGAAGGAGAAAATTTTAAATCCAGGCCTCTGACCTATGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTTAGAAGGAGAAAATTTTAAATCCAGGCCTCTGACCTATGTTT  100

seq1  CCTCCCACCCACTGGATCTGTCTCTTCCAACCTTTCTTTCTTGCTCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACCCACTGGATCTGTCTCTTCCAACCTTTCTTTCTTGCTCACAT  150

seq1  TAGACTAAGCCTGGTCCAGTTCAGAACCAGGAGAAGCCCTCATTCTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAAGCCTGGTCCAGTTCAGAACCAGGAGAAGCCCTCATTCTCACC  200

seq1  TTTCACCCTGTATGAGCTTGTGGGAACCTAGAGAGAGGGTTTAGGCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCCTGTATGAGCTTGTGGGAACCTAGAGAGAGGGTTTAGGCTGTG  250

seq1  TTTCAGTTGGGGCAAGATCATCAGGGACCCTTCCTGGGCCCTTCCTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTGGGGCAAGATCATCAGGGACCCTTCCTGGGCCCTTCCTCAGG  300

seq1  GATCAGGGGCCCAGGAAGGGTGAGGTCTTGAGGGGGTGGGAAAG  344
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGGGCCCAGGAAGGGTGAGGTCTTGAGGGGGTGGGAAAG  344