BAC Information

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BAC

Clone NameB6Ng01-248A10
Chromosome11 (Build37)
Map Location 26,665,065 - 26,821,267
singlet/doubletdoublet
Overlap geneOTTMUSG00000005300, LOC666270
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1
Downstream geneLOC100042367, LOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248A10.bB6Ng01-248A10.g
ACCGA056207GA056208
length1,1271,095
definitionB6Ng01-248A10.b B6Ng01-248A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,820,121 - 26,821,267)(26,665,065 - 26,666,166)
sequence
gaattcatttttaaatggcaattatacatatttaaatttttttccaagag
ttaaagaaactcatcttggtaacatttttttaaaccacaaaagcatataa
aataaccaagattagtgtatttatgttagaatctgactcatggattagtt
ctctgcatgttcttaagacacaaaaatctgaacacccaagtatttctttc
tttattgaaagaaatactttttaaaagtataaatttttatactataaaaa
agtataaagaaataaattattttatttatttacatttcaagtgttatctc
cctttctggtttcccatccacaagtcccctatcccaagaactaaaccacc
aaatatttcttcagctaccctccactgcaccatgctgttcctgctctcct
actgctgttctaatgttagcttcattataggtgaacaaaatatacaatga
ttagatttctgaccatatgttgaatgtgctgatccaacactaagaaaaca
gcaatatatttcccaaactacatttcatagagctgttttttcccaaatat
taaaaacaaaacaaacaaacaaacaaacaccaccaaatcttgctgaggcc
tttggtaaagtgactaagtacagagggaaagcccatgaacgcattagtac
cttataaagaacagaggcagctaccttagatcctgccttcctggtcttcc
ctgcaccgcatgaagaagatgcactgtttccctttggaggacacagcagt
atggcatcattttggaagcaaaggcaagtgttaccagatactagacactc
cagagcccatatcttaaaagagttctcagcaccaaacagtcaaacaaata
ttttatactctctgtaatttaccctgattgttttattttgttaccagctc
aaatagtcactgagatgctttcagccctaggatatgcatcagatttgtca
aaatgtgatgtagatagaggagaaaattatagtccaaccagactttccca
ataaacagtgacctctagagatgtctacagctaggagaagctgataaaga
aaaaagctgagagtatctttatatgatgattgtgtagatgcctgaaataa
attcttttcaatgtatatatttgaatt

gaattcttgttggtgaataaagttcccttggtcaacaagcactctcagaa
ggatctagtagtttcttctttcaaagtgtcacagatatttaaaaggcaga
tgaaagaccagtgattagctgcagtttcgatagctgtgataaaaatacaa
ctcggggaataaagaatggaagtcaaggcaggagcgcaggttagtaacca
ggagcactgggcatggagaagtgctgctttctggcttgtccttcatggct
tgctcagcctgctttcttatgcactttagcactcaagcacaggttggctc
tgaccacattgaactgggttatctcacatcactaatcaataaagaaaatg
ctccataggcttacctaggggccagtctggtgggaccattttttaaaatt
aggttccctttctcaaacagttgtagcttgtgtaaatttgacataaacct
agccagaaagcagtctattagaaatgagtttagaggtgctcattttgtga
acacccacgtgatgtttcactgttcactaggggcattttacttggacata
gttcatgatgcttgttatcagagaaaagtttccacagagaggccttttgc
agctactagataggagaagttgaaaggaaaaacagtgataatcatgaaac
ggaaaagtaaaggttaatattcagaggaactaggaatccaagttttaccg
caactcatatcaacttaacaatctattaaatggtaccttatattctggaa
aaaccaacacaaatccacttactttcgatctataaccttattcttgggca
agaattattttattttggtctgtataatttcttccatatacctacatttt
ccaccgtgttttaagctctttgtgattgcttgctgactcttttccctagt
atatggttttggatcctagtacatattgcaaaacaaaattgatgtatgtt
atcagcagacatgtagcattttttatggagaaggtactgtactgcatgct
gcagtttatttgtataaagggaaaacagtaacttagcagtttaaaagcta
gttgtatagcttatatagaaagaaacataattgagaataatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26820121_26821267
seq2: B6Ng01-248A10.b_48_1174 (reverse)

seq1  AATTCAAAATATATACATTAGAAAAAAGGATTTTTATTTCAAGGCCATCT  50
      ||||| |||||||||||||  ||| ||     |||||||||  | |||||
seq2  AATTC-AAATATATACATTGAAAAGAA-----TTTATTTCA--GGCATCT  42

seq1  ACACATATCATCCATATAAAGGATACTTCTCAGCTTTTTTTCTTTTTATT  100
      ||||| ||||| |||||||| ||||| ||||||| ||||||||||    |
seq2  ACACA-ATCAT-CATATAAA-GATAC-TCTCAGC-TTTTTTCTTT---AT  84

seq1  CAGCCTTCTCCCTAGCTTGTAGACATTCTTCTTAGA-GTCACTG-TTATT  148
      ||| ||||| |||||| |||||||| |||   |||| ||||||| |||||
seq2  CAG-CTTCT-CCTAGC-TGTAGACA-TCT--CTAGAGGTCACTGTTTATT  128

seq1  GGG-AAGTCTTGGTTTGGACTATAATTTTCTCCTCTATCTACATCACATT  197
      ||| ||||||  | ||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGTCT--GGTTGGACTATAATTTTCTCCTCTATCTACATCACATT  176

seq1  TTGACAAATCTGATGCATATCCTA-GGCTGAAAGCATCTCAGTGACTATT  246
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGACAAATCTGATGCATATCCTAGGGCTGAAAGCATCTCAGTGACTATT  226

seq1  TGAGCTGGTAACAAAATAAAACAATCAGGGTAAATTACAGAGAGTATAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGGTAACAAAATAAAACAATCAGGGTAAATTACAGAGAGTATAAA  276

seq1  ATATTTGTTTGACTGTTTGGTGCTGAGAACTCTTTTAAGATATGGGCTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTTTGACTGTTTGGTGCTGAGAACTCTTTTAAGATATGGGCTCT  326

seq1  GGAGTGTCTAGTATCTGGTAACACTTGCCTTTGCTTCCAAAATGATGCCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTCTAGTATCTGGTAACACTTGCCTTTGCTTCCAAAATGATGCCA  376

seq1  TACTGCTGTGTCCTCCAAAGGGAAACAGTGCATCTTCTTCATGCGGTGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGTGTCCTCCAAAGGGAAACAGTGCATCTTCTTCATGCGGTGCA  426

seq1  GGGAAGACCAGGAAGGCAGGATCTAAGGTAGCTGCCTCTGTTCTTTATAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGACCAGGAAGGCAGGATCTAAGGTAGCTGCCTCTGTTCTTTATAA  476

seq1  GGTACTAATGCGTTCATGGGCTTTCCCTCTGTACTTAGTCACTTTACCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTAATGCGTTCATGGGCTTTCCCTCTGTACTTAGTCACTTTACCAA  526

seq1  AGGCCTCAGCAAGATTTGGTGGTGTTTGTTTGTTTGTTTGTTTTGTTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCAGCAAGATTTGGTGGTGTTTGTTTGTTTGTTTGTTTTGTTTTT  576

seq1  AATATTTGGGAAAAAACAGCTCTATGAAATGTAGTTTGGGAAATATATTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGGGAAAAAACAGCTCTATGAAATGTAGTTTGGGAAATATATTG  626

seq1  CTGTTTTCTTAGTGTTGGATCAGCACATTCAACATATGGTCAGAAATCTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCTTAGTGTTGGATCAGCACATTCAACATATGGTCAGAAATCTA  676

seq1  ATCATTGTATATTTTGTTCACCTATAATGAAGCTAACATTAGAACAGCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGTATATTTTGTTCACCTATAATGAAGCTAACATTAGAACAGCAG  726

seq1  TAGGAGAGCAGGAACAGCATGGTGCAGTGGAGGGTAGCTGAAGAAATATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGCAGGAACAGCATGGTGCAGTGGAGGGTAGCTGAAGAAATATT  776

seq1  TGGTGGTTTAGTTCTTGGGATAGGGGACTTGTGGATGGGAAACCAGAAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTTAGTTCTTGGGATAGGGGACTTGTGGATGGGAAACCAGAAAG  826

seq1  GGAGATAACACTTGAAATGTAAATAAATAAAATAATTTATTTCTTTATAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAACACTTGAAATGTAAATAAATAAAATAATTTATTTCTTTATAC  876

seq1  TTTTTTATAGTATAAAAATTTATACTTTTAAAAAGTATTTCTTTCAATAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATAGTATAAAAATTTATACTTTTAAAAAGTATTTCTTTCAATAA  926

seq1  AGAAAGAAATACTTGGGTGTTCAGATTTTTGTGTCTTAAGAACATGCAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAATACTTGGGTGTTCAGATTTTTGTGTCTTAAGAACATGCAGA  976

seq1  GAACTAATCCATGAGTCAGATTCTAACATAAATACACTAATCTTGGTTAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAATCCATGAGTCAGATTCTAACATAAATACACTAATCTTGGTTAT  1026

seq1  TTTATATGCTTTTGTGGTTTAAAAAAATGTTACCAAGATGAGTTTCTTTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGCTTTTGTGGTTTAAAAAAATGTTACCAAGATGAGTTTCTTTA  1076

seq1  ACTCTTGGAAAAAAATTTAAATATGTATAATTGCCATTTAAAAATGAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGGAAAAAAATTTAAATATGTATAATTGCCATTTAAAAATGAATT  1126

seq1  C  1147
      |
seq2  C  1127


seq1: chr11_26665065_26666166
seq2: B6Ng01-248A10.g_67_1161

seq1  GAATTCTTGTTGGTGAATAAAGTTCCCTTGGTCAACAAGCACTCTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTGGTGAATAAAGTTCCCTTGGTCAACAAGCACTCTCAGAA  50

seq1  GGATCTAGTAGTTTCTTCTTTCAAAGTGTCACAGATATTTAAAAGGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTAGTAGTTTCTTCTTTCAAAGTGTCACAGATATTTAAAAGGCAGA  100

seq1  TGAAAGACCAGTGATTAGCTGCAGTTTCGATAGCTGTGATAAAAATACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACCAGTGATTAGCTGCAGTTTCGATAGCTGTGATAAAAATACAA  150

seq1  CTCGGGGAATAAAGAATGGAAGTCAAGGCAGGAGCGCAGGTTAGTAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGGAATAAAGAATGGAAGTCAAGGCAGGAGCGCAGGTTAGTAACCA  200

seq1  GGAGCACTGGGCATGGAGAAGTGCTGCTTTCTGGCTTGTCCTTCATGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACTGGGCATGGAGAAGTGCTGCTTTCTGGCTTGTCCTTCATGGCT  250

seq1  TGCTCAGCCTGCTTTCTTATGCACTTTAGCACTCAAGCACAGGTTGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCCTGCTTTCTTATGCACTTTAGCACTCAAGCACAGGTTGGCTC  300

seq1  TGACCACATTGAACTGGGTTATCTCACATCACTAATCAATAAAGAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACATTGAACTGGGTTATCTCACATCACTAATCAATAAAGAAAATG  350

seq1  CTCCATAGGCTTACCTAGGGGCCAGTCTGGTGGGACCATTTTTTAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGGCTTACCTAGGGGCCAGTCTGGTGGGACCATTTTTTAAAATT  400

seq1  AGGTTCCCTTTCTCAAACAGTTGTAGCTTGTGTAAATTTGACATAAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCCTTTCTCAAACAGTTGTAGCTTGTGTAAATTTGACATAAACCT  450

seq1  AGCCAGAAAGCAGTCTATTAGAAATGAGTTTAGAGGTGCTCATTTTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAAGCAGTCTATTAGAAATGAGTTTAGAGGTGCTCATTTTGTGA  500

seq1  ACACCCACGTGATGTTTCACTGTTCACTAGGGGCATTTTACTTGGACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACGTGATGTTTCACTGTTCACTAGGGGCATTTTACTTGGACATA  550

seq1  GTTCATGATGCTTGTTATCAGAGAAAAGTTTCCACAGAGAGGCCTTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGATGCTTGTTATCAGAGAAAAGTTTCCACAGAGAGGCCTTTTGC  600

seq1  AGCTACTAGATAGGAGAAGTTGAAAGGAAAAACAGTGATAATCATGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTAGATAGGAGAAGTTGAAAGGAAAAACAGTGATAATCATGAAAC  650

seq1  GGAAAAGTAAAGGTTAATATTCAGAGGAACTAGGAATCCAAGTTTTACCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGTAAAGGTTAATATTCAGAGGAACTAGGAATCCAAGTTTTACCG  700

seq1  CAACTCATATCAACTTAACAATCTATTAAATGGTACCTTATATTCTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCATATCAACTTAACAATCTATTAAATGGTACCTTATATTCTGGAA  750

seq1  AAACCAACACAAATCCACTTACTTTCGATCTATAACCTTATTCTTGGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAACACAAATCCACTTACTTTCGATCTATAACCTTATTCTTGGGCA  800

seq1  AGAATTATTTTATTTTGGTCTGTATAATTTCTTCCATATACCTACATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATTTTATTTTGGTCTGTATAATTTCTTCCATATACCTACATTTT  850

seq1  CCCACCGTGTTTTAAGCTCTTTGTGATTGCTTGCTGACTCTTTT-CCTAG  899
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  -CCACCGTGTTTTAAGCTCTTTGTGATTGCTTGCTGACTCTTTTCCCTAG  899

seq1  TATATGGTTTTGGATCCTAGTACATATTGCAAAAACAAAATTGATGTATG  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATATGGTTTTGGATCCTAGTACATATTGC-AAAACAAAATTGATGTATG  948

seq1  TTATCAGCAGACATGTAGCA-TTTTTATGGAGAAGGTACTGTACTGCATG  998
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTATCAGCAGACATGTAGCATTTTTTATGGAGAAGGTACTGTACTGCATG  998

seq1  CTGCAGTTTATTTGTATAAA-GGAAAACAGTAACCTTTAAGCAGTTTAAA  1047
      |||||||||||||||||||| |||||||||||||   | |||||||||||
seq2  CTGCAGTTTATTTGTATAAAGGGAAAACAGTAAC---TTAGCAGTTTAAA  1045

seq1  AGGCTAGTTGTATAAGCTTATATAAAGAAAGAAACAATAATTGGAGATAA  1097
      | ||||||||||| |||||||||  |||||||||| |||||||   ||||
seq2  A-GCTAGTTGTAT-AGCTTATAT--AGAAAGAAAC-ATAATTGAGAATAA  1090

seq1  TATTT  1102
      |||||
seq2  TATTT  1095


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