BAC Information

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BAC

Clone NameB6Ng01-248H04
Chromosome11 (Build37)
Map Location 111,334,211 - 111,457,740
singlet/doubletdoublet
Overlap genenone
Upstream geneMap2k6, LOC100041523, Kcnj16, Kcnj2, LOC667003, LOC100041539
Downstream geneLOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020, EG668396, EG667038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248H04.bB6Ng01-248H04.g
ACCGA056526GA056527
length1,1601,125
definitionB6Ng01-248H04.b B6Ng01-248H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,334,211 - 111,335,389)(111,456,608 - 111,457,740)
sequence
gaattcatcaaagtagtatttccctgagagaggagctgcattaattcttg
aacttgaaaaataacacaatgagtgtcagagtcaaagggaatcacctaaa
agaaaacatgactgaaactacaaagaatctatttttaacaagactatgtg
tttttatcagcaacaggttaacaggcaaataaacagaccattgtaatatg
cacctgttttcaatgtctttcaagttcaaagtcattaaaaaaaaaagaaa
accaattcaaataaagatgtgttgcttctaagaatatatttacatacaca
catatatatgtatgtatatatatcatatgcaatattatatatatatcata
tgcaatattttaaatttttccacttctgctagttgtttaatatgcaaata
acatgaaacagcaaaaagaggcaacaacttttcagaaaagataattccat
aagtctcttcttctgtaattttatccaacttcttcctccactttgatctt
ctcccatattcaaagttctactataacaagaggtcaacatatttctgttg
acttagcacacaataaccacatcctgaaagagtaaatgaatcaataataa
aagatagactaaaaagtaagcatgagggcatacatgtcagagaatatctg
aaacccctggacttgggaggcttaggaaagagactcaaaagttagaggct
agcctgggctatagtttgagatcctgactataaacctgacgagttaaaca
gtattcctacaacataaggagaaaactttgtcattacttggttttacata
agaaaatttaaaactgggttgatttttttttatacagaatgaaaagggaa
tttactgctaaatatatttctgggaacaaggatgggtcagcaatggtgct
aattctcgctatctcctcaatacacctgcaaacaattaccttcctgataa
attgggggaagaaattgctctcttatctggatttagcactatgaataatt
aatgcattttaatcaggacatttttttaaacatcctgacatggtgacaca
gaggtcccataccaatgtgaacatttcatatcttaaaggccaggtcagtt
tatatgaattttacacaatacagttgagctagctcactagtttactaaaa
caacttacag

gaattcactaagtagtgtggtctggctggccattcagtcctaggcaccta
cctgtctctgcctacctcatgctaggatttcaagtgcaagtcaccaagct
caacttgtttgatgtaggttcttgtaatcaaactcaggaccttacatttc
caagacaagtactttgccaactgacttctctccctagtcttcctctttct
cacttgtcagtacagtttccctttcagagtcaggctgaagcagaccatga
cattgagggctcacaacacaatctttttagccagaactatatcagaggct
catgagccaggtactaatgtgggccccaggtggaactttgcagtccatag
attgataatggaatgcagcaaatgatgggaatgatttagtttcaaaaaca
atgggacatgcagtagtggcgaagtttgcggttcctgctgcatgaaaaaa
aattcacatagatgtacaattgaacaaaaggctggtgcctcatctaatga
tatagataactggagctgccttaagacaagcattctcataaatactcatt
aacacagaaaacatggacaaggaacatgcaaagacctgaaagtgtttaca
gagaaaaacctacggagaaagccatcggagagaataagaagggacgttgc
cactcacgaagctggggttgctggtaatatttccaatgaactatttcaac
ctggaactgggaaggtgggtgcagggaagctgccaagctttctttccatc
accatagttccttgctcgcttgttcgacttctctcagcttcatctgcccc
tcagtgctctaccctgacccaaggactgcaaactaaaagctgatgttatt
tttgaaaagctatgaaataaaaatcctcataaataatatggtcagtttcc
aagcaccagattggccccagcctggactacctgggatgacgattaagaat
gaattgtctccatcaagtgaagtgaaaagacccagctcagcctgtgacat
gctgtgcctttagacaggtattctggagctgtgtagtgtcagcagatgct
tgagccacatgtaggacccgtgcaataagttgctctgctgtaaacatgat
tgatgactgttgagttctcattact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_111334211_111335389
seq2: B6Ng01-248H04.b_45_1204

seq1  GAATTCATCAAAGTAGTATTTCCCTGAGAGAGGAGCTGCATTAATTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAAAGTAGTATTTCCCTGAGAGAGGAGCTGCATTAATTCTTG  50

seq1  AACTTGAAAAATAACACAATGAGTGTCAGAGTCAAAGGGAATCACCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAAAATAACACAATGAGTGTCAGAGTCAAAGGGAATCACCTAAA  100

seq1  AGAAAACATGACTGAAACTACAAAGAATCTATTTTTAACAAGACTATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACATGACTGAAACTACAAAGAATCTATTTTTAACAAGACTATGTG  150

seq1  TTTTTATCAGCAACAGGTTAACAGGCAAATAAACAGACCATTGTAATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCAGCAACAGGTTAACAGGCAAATAAACAGACCATTGTAATATG  200

seq1  CACCTGTTTTCAATGTCTTTCAAGTTCAAAGTCATTAAAAAAAAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTTTTCAATGTCTTTCAAGTTCAAAGTCATTAAAAAAAAAAGAAA  250

seq1  ACCAATTCAAATAAAGATGTGTTGCTTCTAAGAATATATTTACATACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTCAAATAAAGATGTGTTGCTTCTAAGAATATATTTACATACACA  300

seq1  CATATATATGTATGTATATATATCATATGCAATATTATATATATATCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATGTATGTATATATATCATATGCAATATTATATATATATCATA  350

seq1  TGCAATATTTTAAATTTTTCCACTTCTGCTAGTTGTTTAATATGCAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATTTTAAATTTTTCCACTTCTGCTAGTTGTTTAATATGCAAATA  400

seq1  ACATGAAACAGCAAAAAGAGGCAACAACTTTTCAGAAAAGATAATTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAACAGCAAAAAGAGGCAACAACTTTTCAGAAAAGATAATTCCAT  450

seq1  AAGTCTCTTCTTCTGTAATTTTATCCAACTTCTTCCTCCACTTTGATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTTCTTCTGTAATTTTATCCAACTTCTTCCTCCACTTTGATCTT  500

seq1  CTCCCATATTCAAAGTTCTACTATAACAAGAGGTCAACATATTTCTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATATTCAAAGTTCTACTATAACAAGAGGTCAACATATTTCTGTTG  550

seq1  ACTTAGCACACAATAACCACATCCTGAAAGAGTAAATGAATCAATAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCACACAATAACCACATCCTGAAAGAGTAAATGAATCAATAATAA  600

seq1  AAGATAGACTAAAAAGTAAGCATGAGGGCATACATGTCAGAGAATATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGACTAAAAAGTAAGCATGAGGGCATACATGTCAGAGAATATCTG  650

seq1  AAACCCCTGGACTTGGGAGGCTTAGGAAAGAGACTCAAAAGTTAGAGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCTGGACTTGGGAGGCTTAGGAAAGAGACTCAAAAGTTAGAGGCT  700

seq1  AGCCTGGGCTATAGTTTGAGATCCTGACTATAAACCTGACGAGTTAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGCTATAGTTTGAGATCCTGACTATAAACCTGACGAGTTAAACA  750

seq1  GTATTCCTACAACATAAGGAGAAAACTTTGTCATTACTTGGTTTTACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCTACAACATAAGGAGAAAACTTTGTCATTACTTGGTTTTACATA  800

seq1  AGAAAATTTAAAACTGGGTTGA-TTTTTTTTATACAGAATGAAAAGGGAA  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGAAAATTTAAAACTGGGTTGATTTTTTTTTATACAGAATGAAAAGGGAA  850

seq1  TTTACTGCTAAATATATTTCT-GGAACAAGGAT-GGTCAGCAATGGTGCT  897
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  TTTACTGCTAAATATATTTCTGGGAACAAGGATGGGTCAGCAATGGTGCT  900

seq1  AATTCTCGCTATCTCCTCAATACACCTGCAAACAATTACCTTCCTGATAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCGCTATCTCCTCAATACACCTGCAAACAATTACCTTCCTGATAA  950

seq1  ATTGGGGGAAGAAAATTGCTCTCTTATCTGGAATTTAAGCAACTAATGAA  997
      ||||||||||| ||||||||||||||||||||  || ||| ||| |||||
seq2  ATTGGGGGAAG-AAATTGCTCTCTTATCTGGA--TTTAGC-ACT-ATGAA  995

seq1  TAATTAAATGCATTTAAATCAAGGACATTTTTTTTAAACATCCTGACATG  1047
      ||||| ||||||||| |||| |||||| ||||||||||||||||||||||
seq2  TAATT-AATGCATTTTAATC-AGGACA-TTTTTTTAAACATCCTGACATG  1042

seq1  TTGACCACAGAAGTCCCCATACC-ATGTG-ACATTTCCATATCCTTAAAG  1095
       ||| |||||| || |||||||| ||||| |||||| |||||| | || |
seq2  GTGA-CACAGAGGT-CCCATACCAATGTGAACATTT-CATATCTTAAAGG  1089

seq1  CAAGGTCACCTTTAATAATGATTTTTACACAATACACAGTTTGGAAGCCT  1145
      | ||||||  ||||   |||| |||||||||||  ||||||  |    ||
seq2  CCAGGTCA-GTTTA--TATGAATTTTACACAAT--ACAGTTGAG----CT  1130

seq1  AAGGCTTTCACTAATTTTACTAAAACAAC-TACAG  1179
      |  ||  ||||| | |||||||||||||| |||||
seq2  A--GC--TCACT-AGTTTACTAAAACAACTTACAG  1160


seq1: chr11_111456608_111457740
seq2: B6Ng01-248H04.g_64_1188 (reverse)

seq1  AGTAATGAGAACTCCAAACAGTCAATCAAATCATGTTTACAGCCAAGAGC  50
      ||||||||||||||  ||||||| ||| |||||||||||||||  |||||
seq2  AGTAATGAGAACTC--AACAGTC-ATC-AATCATGTTTACAGC--AGAGC  44

seq1  AAAATTAATGCACGGGTTCTTCCTTGTGCTC-AGCATCTGCTTGACACTT  99
       || ||| ||||||||| || | |   |||| ||||||||| |||||| |
seq2  -AACTTATTGCACGGGTCCTACATGTGGCTCAAGCATCTGC-TGACAC-T  91

seq1  ACACAGCTCCAGATACCCTGTCT-AAGGCACAGCATTGTTCACA-GCTG-  146
      |||||||||||||   ||||||| ||||||||||||   ||||| |||| 
seq2  ACACAGCTCCAGAATACCTGTCTAAAGGCACAGCAT--GTCACAGGCTGA  139

seq1  GCTGGGTCTTTTCACTTCAACTTGATGGAGACAATTCATTCTTAATCGTC  196
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCTGGGTCTTTTCACTTC-ACTTGATGGAGACAATTCATTCTTAATCGTC  188

seq1  ATCCCAGGTAGTTCCAGGCT-GGGCCAATCTGGTGCTTGG-AACTGACCA  244
      ||||||||||| |||||||| ||||||||||||||||||| |||||||||
seq2  ATCCCAGGTAG-TCCAGGCTGGGGCCAATCTGGTGCTTGGAAACTGACCA  237

seq1  TATTATTTATGAGGATTTTTATTTCATAGCTTTTCAAAAATAACATCAGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTATGAGGATTTTTATTTCATAGCTTTTCAAAAATAACATCAGC  287

seq1  TTTTTAGTTTGCAGTCCTTGGGTCAGGGTAGAGCACTGAGGGGCAGATGA  344
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTAGTTTGCAGTCCTTGGGTCAGGGTAGAGCACTGAGGGGCAGATGA  336

seq1  AGCTGAGAGAAGTCGAACAAGCGAGCAAGGAACTATGGTGATGGAAAGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGAGAAGTCGAACAAGCGAGCAAGGAACTATGGTGATGGAAAGAA  386

seq1  AGCTTGGCAGCTTCCCTGCACCCACCTTCCCAGTTCCAGGTTGAAATAGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGCAGCTTCCCTGCACCCACCTTCCCAGTTCCAGGTTGAAATAGT  436

seq1  TCATTGGAAATATTACCAGCAACCCCAGCTTCGTGAGTGGCAACGTCCCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGAAATATTACCAGCAACCCCAGCTTCGTGAGTGGCAACGTCCCT  486

seq1  TCTTATTCTCTCCGATGGCTTTCTCCGTAGGTTTTTCTCTGTAAACACTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCTCTCCGATGGCTTTCTCCGTAGGTTTTTCTCTGTAAACACTT  536

seq1  TCAGGTCTTTGCATGTTCCTTGTCCATGTTTTCTGTGTTAATGAGTATTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCTTTGCATGTTCCTTGTCCATGTTTTCTGTGTTAATGAGTATTT  586

seq1  ATGAGAATGCTTGTCTTAAGGCAGCTCCAGTTATCTATATCATTAGATGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATGCTTGTCTTAAGGCAGCTCCAGTTATCTATATCATTAGATGA  636

seq1  GGCACCAGCCTTTTGTTCAATTGTACATCTATGTGAATTTTTTTTCATGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAGCCTTTTGTTCAATTGTACATCTATGTGAATTTTTTTTCATGC  686

seq1  AGCAGGAACCGCAAACTTCGCCACTACTGCATGTCCCATTGTTTTTGAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAACCGCAAACTTCGCCACTACTGCATGTCCCATTGTTTTTGAAA  736

seq1  CTAAATCATTCCCATCATTTGCTGCATTCCATTATCAATCTATGGACTGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCATTCCCATCATTTGCTGCATTCCATTATCAATCTATGGACTGC  786

seq1  AAAGTTCCACCTGGGGCCCACATTAGTACCTGGCTCATGAGCCTCTGATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCACCTGGGGCCCACATTAGTACCTGGCTCATGAGCCTCTGATA  836

seq1  TAGTTCTGGCTAAAAAGATTGTGTTGTGAGCCCTCAATGTCATGGTCTGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTGGCTAAAAAGATTGTGTTGTGAGCCCTCAATGTCATGGTCTGC  886

seq1  TTCAGCCTGACTCTGAAAGGGAAACTGTACTGACAAGTGAGAAAGAGGAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCTGACTCTGAAAGGGAAACTGTACTGACAAGTGAGAAAGAGGAA  936

seq1  GACTAGGGAGAGAAGTCAGTTGGCAAAGTACTTGTCTTGGAAATGTAAGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGGAGAGAAGTCAGTTGGCAAAGTACTTGTCTTGGAAATGTAAGG  986

seq1  TCCTGAGTTTGATTACAAGAACCTACATCAAACAAGTTGAGCTTGGTGAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTTGATTACAAGAACCTACATCAAACAAGTTGAGCTTGGTGAC  1036

seq1  TTGCACTTGAAATCCTAGCATGAGGTAGGCAGAGACAGGTAGGTGCCTAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTTGAAATCCTAGCATGAGGTAGGCAGAGACAGGTAGGTGCCTAG  1086

seq1  GACTGAATGGCCAGCCAGACCACACTACTTAGTGAATTC  1133
      |||||||||||||||||||||||||||||||||||||||
seq2  GACTGAATGGCCAGCCAGACCACACTACTTAGTGAATTC  1125


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