BAC Information

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BAC

Clone NameB6Ng01-250C06
Chromosome11 (Build37)
Map Location 61,908,511 - 62,041,177
singlet/doubletdoublet
Overlap geneSpecc1
Upstream geneLOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558
Downstream geneAdora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250C06.bB6Ng01-250C06.g
ACCGA057769GA057770
length1,0001,133
definitionB6Ng01-250C06.b B6Ng01-250C06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,039,710 - 62,041,177)(61,908,511 - 61,909,663)
sequence
gaattcagctgtttcctagtaagtcacagcaaaggcatcacaaagcatca
actgagggccaattaccacctccagtacaggcttccttcaccacaggtac
ctaacaatggtggaatatggcagtggccggaagtgcaggctttggtacca
gctggcttcggtttaaccttctgctttgcttcctccaagctaaggtactg
taaacaaattatttagcttttgtacgcctccgttcgcttatttgtcaaat
ggtctagtattaaccatgctcaccggtgccctgagccattcagatcagtc
ccttgctcactcccaagtgttgactttttagctagttatacaggctccag
tcccatggaggaaagttgtttaggaagctaaattccatcccagaaaacac
atcattactacggaggaatgcctttggaggaagtcagttctaggatgcat
gaacatggcttactcttaagtagggaccacacttatcttactctagctgc
ttggtcagggatgggcacatggcctaggaaatggaaaccaccagctggca
gctgagctggggaaagctctcctaggaaaacagttggggcacaggaagga
tggagaaccctgatagtggagcagcctggctcttctgtttgtgtgatgtt
taactctatgtatcaactttattgggatatgatagtaaggcattatttct
tagtgtacctcggagagcatttctggaataaaggggcacttggattggta
gagtgagcacaataacacccaatggctacccagtgtgggtaaagggactg
aatggtgttaaaaagccagaggaaggacatcaaatctctccacgttgagc
ttggacatccatgacctgcctttggtgctcctgggtttttctagactact
aaacatatgccataaaaaggtttggtcttaaagggatggccaagaacttt
ggactagagtctgcacactgtctcgcttataggccttcttgggtctcagc

gaattctcatgtttgccaaagtacaagaaagaaggcatctgtaggaacta
tgagcacaatacacgtcttctatagcttgtcatgtgagcttgaattccta
taggccacacaggctgatcgtggttcatgtagggagaaaagggatttttg
agtggtatgataattcttgtgagaaaaaggtgttgtcaggagggttggag
agcgactgtgtaaggccttgcagccaggaacagtgctgcagtgctgcgct
gaattcacgcagaattgacccaagcagcactcactgctgcaggctcctgg
atggtggagtgtgcacttcctgcagctggcactgacatcccaggggctgg
gtcctccatgtaacagggtttgaaaggattcttgagaaggctgggcttag
gaaatagcctggctaaacttagcctgtctcagtatagtctgagcgtgaga
ctgcaccaggcctcgggatgtaaaatttctcttaaaattctcattactgt
tatggattcattttgttgattggggacataatttttctaaaggtttggct
atgactgtgaggaattgaatgcacaaatatagcatttgaaattcttaata
tagcatgagttaaacctcttctacccgaaattcaaaaatccaggactgag
cccttcttaggacatttcaggtattaggttttcagatttgggatgctcaa
cctatgaagtctttgcaaatatttcaaaatccaaaaagtcataaagtcga
agcacttctggtgtttgagataagggacactcagcccgcatttcccatat
gccagggaatgactgtgataatgaggaggtcagaaagaaacataccaagc
agcaggtggagggaggaaaagtttaagttaataaacagaagtaaataaag
taaagaaaaagccaaaaaaattaatactgttaaatattcttaagctaaat
ctacatagaaaatcaaatcagcagaaaatcagtaccagagagctgtatgc
aaaacggagcttctacaggacaaatagaagaccctaaatatacatatact
gattttaaaaccccaatttttgtatctttatgtacagaaaatagaatgaa
aataaaacggaaaaggatttgtttgaaacatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_62039710_62041177
seq2: B6Ng01-250C06.b_48_989 (reverse)

seq1  TGGCCATCCCTTTAAGACCAAAAGCATGTCTTTTCATGGCATGTGTTTAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAGTCTAGAAAAATCTTACTGAAGAACGTCACCAAATTCTTTTTGCTATT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCTGGCTACATCTTCCCCCTGGCTCTCTGCAGCTAGGGAAACTCTGATTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TAGAGTCATGTAGGTAGATCGGGGCTATCCAGGTACTGTATTAACGATTC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCCATCCCACAACCCTACTCACCTTCACCACATCTACAGTCTCTCACC  250
                                                        
seq2  --------------------------------------------------  0

seq1  ATGTGCGAAACATCTGTGCGCAATGCATACCACAGTCATCGCTCTGTCTC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTCATTAACAGTGGTAAAATCTTGTTTTCCTAGTTATAGTTGCCAAGC  350
                                                        
seq2  --------------------------------------------------  0

seq1  TATATGAAAGCTCCCTAGAAAAACAGGACCAGGGCGAAATAGATATGGAA  400
                                                        
seq2  --------------------------------------------------  0

seq1  TGGGATTGTAAAGAAACTAGACCTTGTGATTAGAGGGTAGCAAGTCCCAC  450
                                                        
seq2  --------------------------------------------------  0

seq1  ACTCTGCCACCAGCAAGCTGGAGACCCAAGAAGGCCTATAAGCCGAGACA  500
                                                        
seq2  --------------------------------------------------  0

seq1  GTGGTGCAGACTCTAGTCCAAAGTTCTTGGCCATCCCTTTAAGACCAAAC  550
                                 |||||||||||||||||||||||
seq2  ---------------------------TGGCCATCCCTTTAAGACCAAAC  23

seq1  CTTTTTATGGCATATGTTTAGTAGTCTAGAAAAACCCAGGAGCACCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATGGCATATGTTTAGTAGTCTAGAAAAACCCAGGAGCACCAAAG  73

seq1  GCAGGTCATGGATGTCCAAGCTCAACGTGGAGAGATTTGATGTCCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCATGGATGTCCAAGCTCAACGTGGAGAGATTTGATGTCCTTCCT  123

seq1  CTGGCTTTTTAACACCATTCAGTCCC-TTACCCACACTGGGTAGCCATTG  699
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGGCTTTTTAACACCATTCAGTCCCTTTACCCACACTGGGTAGCCATTG  173

seq1  GGTGTTATTGTGCTCACTCTACCAATCCAAGTGCCCCTTTATTCCAGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTATTGTGCTCACTCTACCAATCCAAGTGCCCCTTTATTCCAGAAA  223

seq1  TGCTCTCCGAGGTACACTAAGAAATAATGCCTTACTATCATATCCCAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCGAGGTACACTAAGAAATAATGCCTTACTATCATATCCCAATA  273

seq1  AAGTTGATACATAGAGTTAAACATCACACAAACAGAAGAGCCAGGCTGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATACATAGAGTTAAACATCACACAAACAGAAGAGCCAGGCTGCT  323

seq1  CCACTATCAGGGTTCTCCATCCTTCCTGTGCCCCAACTGTTTTCCTAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATCAGGGTTCTCCATCCTTCCTGTGCCCCAACTGTTTTCCTAGGA  373

seq1  GAGCTTTCCCCAGCTCAGCTGCCAGCTGGTGGTTTCCATTTCCTAGGCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTCCCCAGCTCAGCTGCCAGCTGGTGGTTTCCATTTCCTAGGCCA  423

seq1  TGTGCCCATCCCTGACCAAGCAGCTAGAGTAAGATAAGTGTGGTCCCTAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCATCCCTGACCAAGCAGCTAGAGTAAGATAAGTGTGGTCCCTAC  473

seq1  TTAAGAGTAAGCCATGTTCATGCATCCTAGAACTGACTTCCTCCAAAGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTAAGCCATGTTCATGCATCCTAGAACTGACTTCCTCCAAAGGC  523

seq1  ATTCCTCCGTAGTAATGATGTGTTTTCTGGGATGGAATTTAGCTTCCTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCCGTAGTAATGATGTGTTTTCTGGGATGGAATTTAGCTTCCTAA  573

seq1  ACAACTTTCCTCCATGGGACTGGAGCCTGTATAACTAGCTAAAAAGTCAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTCCTCCATGGGACTGGAGCCTGTATAACTAGCTAAAAAGTCAA  623

seq1  CACTTGGGAGTGAGCAAGGGACTGATCTGAATGGCTCAGGGCACCGGTGA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGAGTGAGCAAGGGACTGATCTGAATGGCTCAGGGCACCGGTGA  673

seq1  GCATGGTTAATACTAGACCATTTGACAAATAAGCGAACGGAGGCGTACAA  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTTAATACTAGACCATTTGACAAATAAGCGAACGGAGGCGTACAA  723

seq1  AAGCTAAATAATTTGTTTACAGTACCTTAGCTTGGAGGAAGCAAAGCAGA  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAATAATTTGTTTACAGTACCTTAGCTTGGAGGAAGCAAAGCAGA  773

seq1  AGGTTAAACCGAAGCCAGCTGGTACCAAAGCCTGCACTTCCGGCCACTGC  1349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAACCGAAGCCAGCTGGTACCAAAGCCTGCACTTCCGGCCACTGC  823

seq1  CATATTCCACCATTGTTAGGTACCTGTGGTGAAGGAAGCCTGTACTGGAG  1399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCCACCATTGTTAGGTACCTGTGGTGAAGGAAGCCTGTACTGGAG  873

seq1  GTGGTAATTGGCCCTCAGTTGATGCTTTGTGATGCCTTTGCTGTGACTTA  1449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAATTGGCCCTCAGTTGATGCTTTGTGATGCCTTTGCTGTGACTTA  923

seq1  CTAGGAAACAGCTGAATTC  1468
      |||||||||||||||||||
seq2  CTAGGAAACAGCTGAATTC  942

seq1: chr11_61908511_61909663
seq2: B6Ng01-250C06.g_66_1198

seq1  GAATTCTCATGTTTGCCAAAGTACAAGAAAGAAGGCATCTGTAGGAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGTTTGCCAAAGTACAAGAAAGAAGGCATCTGTAGGAACTA  50

seq1  TGAGCACAATACACGTCTTCTATAGCTTGTCATGTGAGCTTGAATTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAATACACGTCTTCTATAGCTTGTCATGTGAGCTTGAATTCCTA  100

seq1  TAGGCCACACAGGCTGATCGTGGTTCATGTAGGGAGAAAAGGGATTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCACACAGGCTGATCGTGGTTCATGTAGGGAGAAAAGGGATTTTTG  150

seq1  AGTGGTATGATAATTCTTGTGAGAAAAAGGTGTTGTCAGGAGGGTTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTATGATAATTCTTGTGAGAAAAAGGTGTTGTCAGGAGGGTTGGAG  200

seq1  AGCGACTGTGTAAGGCCTTGCAGCCAGGAACAGTGCTGCAGTGCTGCGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGACTGTGTAAGGCCTTGCAGCCAGGAACAGTGCTGCAGTGCTGCGCT  250

seq1  GAATTCACGCAGAATTGACCCAAGCAGCACTCACTGCTGCAGGCTCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGCAGAATTGACCCAAGCAGCACTCACTGCTGCAGGCTCCTGG  300

seq1  ATGGTGGAGTGTGCACTTCCTGCAGCTGGCACTGACATCCCAGGGGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGAGTGTGCACTTCCTGCAGCTGGCACTGACATCCCAGGGGCTGG  350

seq1  GTCCTCCATGTAACAGGGTTTGAAAGGATTCTTGAGAAGGCTGGGCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCATGTAACAGGGTTTGAAAGGATTCTTGAGAAGGCTGGGCTTAG  400

seq1  GAAATAGCCTGGCTAAACTTAGCCTGTCTCAGTATAGTCTGAGCGTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGCCTGGCTAAACTTAGCCTGTCTCAGTATAGTCTGAGCGTGAGA  450

seq1  CTGCACCAGGCCTCGGGATGTAAAATTTCTCTTAAAATTCTCATTACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCAGGCCTCGGGATGTAAAATTTCTCTTAAAATTCTCATTACTGT  500

seq1  TATGGATTCATTTTGTTGATTGGGGACATAATTTTTCTAAAGGTTTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATTCATTTTGTTGATTGGGGACATAATTTTTCTAAAGGTTTGGCT  550

seq1  ATGACTGTGAGGAATTGAATGCACAAATATAGCATTTGAAATTCTTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTGAGGAATTGAATGCACAAATATAGCATTTGAAATTCTTAATA  600

seq1  TAGCATGAGTTAAACCTCTTCTACCCGAAATTCAAAAATCCAGGACTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGAGTTAAACCTCTTCTACCCGAAATTCAAAAATCCAGGACTGAG  650

seq1  CCCTTCTTAGGACATTTCAGGTATTAGGTTTTCAGATTTGGGATGCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTAGGACATTTCAGGTATTAGGTTTTCAGATTTGGGATGCTCAA  700

seq1  CCTATGAAGTCTTTGCAAATATTTCAAAATCCAAAAAGTCATAAAGTCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGAAGTCTTTGCAAATATTTCAAAATCCAAAAAGTCATAAAGTCGA  750

seq1  AGCACTTCTGGTGTTTGAGATAAGGGACACTCAGCCCGCATTTCCCATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTCTGGTGTTTGAGATAAGGGACACTCAGCCCGCATTTCCCATAT  800

seq1  GCCAGGGAATGACTGTGATAATGAGGAGGTCAGAAAGAAACATACCAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGAATGACTGTGATAATGAGGAGGTCAGAAAGAAACATACCAAGC  850

seq1  AGCAGGGTGGAGGGAGGAAAAAGTTTAAGTTAATAAACAGAAGTAAAATA  900
      |||| |||||||||||| |||||||||||||||||||||||||| |||||
seq2  AGCA-GGTGGAGGGAGG-AAAAGTTTAAGTTAATAAACAGAAGT-AAATA  897

seq1  AAGTAAAGAAAAAAGCCAAAAAAATTAATACTGTTAAAATATTCTTAAGC  950
      |||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  AAGTAAAG-AAAAAGCCAAAAAAATTAATACTGTT-AAATATTCTTAAGC  945

seq1  TAAATCTACATAGAAAATCAAAATCAGCAGAAAATCAGTACCAGAAGAAG  1000
      ||||||||||||||||||| |||||||||||||||||||||||||   ||
seq2  TAAATCTACATAGAAAATC-AAATCAGCAGAAAATCAGTACCAGA--GAG  992

seq1  CTGTATGCAAAAACGGGAGCTTCTACAGGACAAATAG-AGACCCTAAATA  1049
      ||||||||||||   |||||||||||||||||||||| ||||||||||||
seq2  CTGTATGCAAAA--CGGAGCTTCTACAGGACAAATAGAAGACCCTAAATA  1040

seq1  TACCATATACTGATTTTTAAAAACCCCAATTTTTGTTAATC-TTATGTAC  1098
      || ||||||||||||||  |||||||||||||||||  ||| ||||||| 
seq2  TA-CATATACTGATTTT--AAAACCCCAATTTTTGT--ATCTTTATGTA-  1084

seq1  CAGAAAATAGAATGAAAATAAAAAACCAGAAAAAAGAATTTGTTTAAAAA  1148
      |||||||||||||||||||||||   | |  ||||| ||||||||  |||
seq2  CAGAAAATAGAATGAAAATAAAA---CGG--AAAAGGATTTGTTT-GAAA  1128

seq1  CATAT  1153
      |||||
seq2  CATAT  1133