BAC Information

Click to search

BAC

Clone NameB6Ng01-250L15
Chromosome11 (Build37)
Map Location 67,025,734 - 67,158,935
singlet/doubletdoublet
Overlap geneMyh1, Myh4, Myh8, Myh13
Upstream geneGm879, LOC668323, A530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2
Downstream geneGas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250L15.bB6Ng01-250L15.g
ACCGA058192GA058193
length2341,172
definitionB6Ng01-250L15.b B6Ng01-250L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,025,734 - 67,025,973)(67,157,755 - 67,158,935)
sequence
agaagaggaaacaatcagtcccactgggtctttattctgaatacataaca
aaaagaattactaacatcaaggttggattgtatctttactgcagtttgta
gagactgaggttttccaaaatgagaagaataaagagattattgaagaaga
ggtctaggcttgatccaactattctctctctctctctctctctctctctc
tctctctctctctctccctctccctctccctctc
gaattccgagttgagccttgccagggatcatgctgtctttggctcctagc
cttccatgctttccagatggcccaaggagagttctgtattgcctttgtat
gaatatgtcaaacccattttttcttttttcttttccccttttggtttttg
agacagaatcttgtcttgctgccatggctgacatcaaactacaacctttt
gcctcagccttaggaactgcgggattggcagtgcacacctctatgcccca
cgttctgaactttaaatggtttcctaagccacctcctcctctcttctctt
cagcccatccttaggaatgtacacacattttagtgagtcccattctagcc
tggagagtcactcaccaggagtcttggtctcattgggaatcaggcatcgc
acaaagtgaggatgggtgctccttaggttggtcatcaatttgtttaagtt
ttcctggggcacagatagaagcaagcacatctctcttagtgcatgccatt
tcactggacagagaaacaagtgaaagaggaagatatcaaaagagaaacca
cgtaccctgaacacagcagacacagtctggaaggaggagcccttcttctt
tcctcccttcttgcctcctgcggagtcacctgcagggggacacacagaat
tggggtcaggtggtctaggggaaggatctatacacgccctcttctgagct
cagtggcaagaatgttgactgcattggcccaagttttgttgggttgttct
tagcacacacctaagctctctctgatttggggacactcaattttatcagt
gtgctaataggctggggtgggatgtggtgacatttagcagagagccataa
tacacactcttgggtgtaaggaagacagtcctcttcttgggggagtctga
catttagtcaaatgggttgagacattcttctccatgattggaatctctct
tcctgtatttaccctttattattgatagtttgaatttattttttatcttg
aggacgggtctgctatgtaacccagcctgctttgaacctggtagcaatct
gcctctaactatcccagtgcttgagatcatagacaggctctcagtatctg
gaatctgcttcatgagtagaactgaaagaaccaacctattttttcccgat
attctatgagtctattcccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_67025734_67025973
seq2: B6Ng01-250L15.b_47_286

seq1  GAATTCAGAAGAGGAAACAATCAGTCCCACTGGGTCTTTATTCTGAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGAGGAAACAATCAGTCCCACTGGGTCTTTATTCTGAATAC  50

seq1  ATAACAAAAAGAATTACTAACATCAAGGTTGGATTGTATCTTTACTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAAAGAATTACTAACATCAAGGTTGGATTGTATCTTTACTGCAG  100

seq1  TTTGTAGAGACTGAGGTTTTCCAAAATGAGAAGAATAAAGAGATTATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGAGACTGAGGTTTTCCAAAATGAGAAGAATAAAGAGATTATTGA  150

seq1  AGAAGAGGTCTAGGCTTGATCCAACTATTCTCTCTCTCTCTCTCTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGTCTAGGCTTGATCCAACTATTCTCTCTCTCTCTCTCTCTCTC  200

seq1  TCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCTCCCTCTC  240
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCTCCCTCTC  240

seq1: chr11_67157755_67158935
seq2: B6Ng01-250L15.g_70_1241 (reverse)

seq1  GGGGGGAATAGACT-ATAGAATATTTGTGAGAAAAAAATAGAGTTTTGTT  49
      |||||||||||||| |||||||||    | ||||||   | || || |||
seq2  GGGGGGAATAGACTCATAGAATAT---CGGGAAAAA---ATAGGTTGGTT  44

seq1  CTTTTCAGTTTCTTCCTCATGAAGGCAGATTCCAGGATACTGAGAG-CTG  98
      | ||||||||   | |||||||| |||||||||| ||||||||||| |||
seq2  C-TTTCAGTT--CTACTCATGAA-GCAGATTCCA-GATACTGAGAGCCTG  89

seq1  TTCCTATGATCTC-AGCACTGGGGTAG-TAGAGGCAGGATTGCTA-CAAG  145
      |  |||||||||| ||||||||| ||| |||||||| |||||||| || |
seq2  T--CTATGATCTCAAGCACTGGGATAGTTAGAGGCA-GATTGCTACCAGG  136

seq1  TTCAAAGCCAGGCTGGGTTACATAGCAAGACCCGGTCTCCAAGATAAAAA  195
      ||||||| |||||||||||||||||| |||||| |||  |||||||||||
seq2  TTCAAAG-CAGGCTGGGTTACATAGC-AGACCC-GTCCTCAAGATAAAAA  183

seq1  ATAAAATCAAACTATCAATAATAAAGGGGTAAATACAGG-AGAGAGATTC  244
      ||||| ||||||||||||||||||| ||||||||||||| ||||||||||
seq2  ATAAATTCAAACTATCAATAATAAA-GGGTAAATACAGGAAGAGAGATTC  232

seq1  CAATCATGGAGAAGAATGTCTCAACCCATTTGACTAAATGTCAGACT-CC  293
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAATCATGGAGAAGAATGTCTCAACCCATTTGACTAAATGTCAGACTCCC  282

seq1  CCAAGAAGAGGACTGTCTTCC-TACA-CCAAGAGTGTGTATTATGGCTCT  341
      ||||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  CCAAGAAGAGGACTGTCTTCCTTACACCCAAGAGTGTGTATTATGGCTCT  332

seq1  CTGCTAAATGTCACCACATCCCACCCCAGCCTATTAGCACACTGATAAAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAATGTCACCACATCCCACCCCAGCCTATTAGCACACTGATAAAA  382

seq1  TTGAGTGTCCCCAAATCAGAGAGAGCTTAGGTGTGTGCTAAGAACAACCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGTCCCCAAATCAGAGAGAGCTTAGGTGTGTGCTAAGAACAACCC  432

seq1  AACAAAACTTGGGCCAATGCAGTCAACATTCTTGCCACTGAGCTCAGAAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACTTGGGCCAATGCAGTCAACATTCTTGCCACTGAGCTCAGAAG  482

seq1  AGGGCGTGTATAGATCCTTCCCCTAGACCACCTGACCCCAATTCTGTGTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGTGTATAGATCCTTCCCCTAGACCACCTGACCCCAATTCTGTGTG  532

seq1  TCCCCCTGCAGGTGACTCCGCAGGAGGCAAGAAGGGAGGAAAGAAGAAGG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTGCAGGTGACTCCGCAGGAGGCAAGAAGGGAGGAAAGAAGAAGG  582

seq1  GCTCCTCCTTCCAGACTGTGTCTGCTGTGTTCAGGGTACGTGGTTTCTCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCCTTCCAGACTGTGTCTGCTGTGTTCAGGGTACGTGGTTTCTCT  632

seq1  TTTGATATCTTCCTCTTTCACTTGTTTCTCTGTCCAGTGAAATGGCATGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATCTTCCTCTTTCACTTGTTTCTCTGTCCAGTGAAATGGCATGC  682

seq1  ACTAAGAGAGATGTGCTTGCTTCTATCTGTGCCCCAGGAAAACTTAAACA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAGAGATGTGCTTGCTTCTATCTGTGCCCCAGGAAAACTTAAACA  732

seq1  AATTGATGACCAACCTAAGGAGCACCCATCCTCACTTTGTGCGATGCCTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATGACCAACCTAAGGAGCACCCATCCTCACTTTGTGCGATGCCTG  782

seq1  ATTCCCAATGAGACCAAGACTCCTGGTGAGTGACTCTCCAGGCTAGAATG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAATGAGACCAAGACTCCTGGTGAGTGACTCTCCAGGCTAGAATG  832

seq1  GGACTCACTAAAATGTGTGTACATTCCTAAGGATGGGCTGAAGAGAAGAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCACTAAAATGTGTGTACATTCCTAAGGATGGGCTGAAGAGAAGAG  882

seq1  AGGAGGAGGTGGCTTAGGAAACCATTTAAAGTTCAGAACGTGGGGCATAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGGTGGCTTAGGAAACCATTTAAAGTTCAGAACGTGGGGCATAG  932

seq1  AGGTGTGCACTGCCAATCCCGCAGTTCCTAAGGCTGAGGCAAAAGGTTGT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCACTGCCAATCCCGCAGTTCCTAAGGCTGAGGCAAAAGGTTGT  982

seq1  AGTTTGATGTCAGCCATGGCAGCAAGACAAGATTCTGTCTCAAAAACCAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATGTCAGCCATGGCAGCAAGACAAGATTCTGTCTCAAAAACCAA  1032

seq1  AAGGGGAAAAGAAAAAAGAAAAAATGGGTTTGACATATTCATACAAAGGC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAAAGAAAAAAGAAAAAATGGGTTTGACATATTCATACAAAGGC  1082

seq1  AATACAGAACTCTCCTTGGGCCATCTGGAAAGCATGGAAGGCTAGGAGCC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGAACTCTCCTTGGGCCATCTGGAAAGCATGGAAGGCTAGGAGCC  1132

seq1  AAAGACAGCATGATCCCTGGCAAGGCTCAACTCGGAATTC  1181
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGCATGATCCCTGGCAAGGCTCAACTCGGAATTC  1172