BAC Information

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BAC

Clone NameB6Ng01-250M08
Chromosome11 (Build37)
Map Location 111,373,060 - 111,456,212
singlet/doubletdoublet
Overlap genenone
Upstream geneMap2k6, LOC100041523, Kcnj16, Kcnj2, LOC667003, LOC100041539
Downstream geneLOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020, EG668396, EG667038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250M08.bB6Ng01-250M08.g
ACCGA058222GA058223
length1,1241,163
definitionB6Ng01-250M08.b B6Ng01-250M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,373,060 - 111,374,191)(111,455,058 - 111,456,212)
sequence
gaattcattaattattctcatttcttgatacagagactctttctttgtag
tccaggctggcacttaactccttgtggaattaaagctcatctcaaacgaa
tgatcctcctgcctcagcctctcatgtgcagatacaattccctcagtgaa
cacaggttctcactctggttctctatgttttcttcccaataatttgtttt
ctgggtactgctgaggtcgttgctcccgttatcttcagagaacgtccagg
acacaatgaagtctctgtattgtgtttaatgtccttttccccattattca
gtggagtagtacttggaagaagtcagttcaattgcaggccgattctggaa
ctccttagacccttgtgatgtgagccctgtttttttcttttgaagaaact
cattgttcctgtgatcattgctgcagagagagagagagggaaagtgagag
agagagaaagtgagagagagtggggaagctttcagccaggatttatttac
tcttctaagtcttacttgtgataatcaaacccaatgtaaatcaggatgct
ggccataaagtatgggcatgacaccagaacaataacaataaacattgtaa
gtcactaagaagcatccgagagaagggcacatctaccacagatgcagacc
aaagcaagcgcatttagcttgcttgcttaccttctagcagcagtgtgtgc
ctgcatgttcctgtgtgttttctgttatgattccttttataccctgttct
ctctgaccccgtgaaagctcatgatacattttgatagttactcatttgct
agaatagcgtcccagagtcttttctggattcatgaagatgacaacacacc
aacaagggagaacaatgctttattgtgctttgtctcctccgttaggaagc
caatagcaggcactttgtttgggaatgaatagatgaatgataatgcgctt
ctcataggacactgttcaaaatcttttttatctctggaaccagaagtttc
atttgtttccccaagtcagctggtgatcagggcagtgcaagggcaaaagc
cagcttgtcaacaatagagtatagaagtgctttgagaacctcagagatca
gctgctgtagaaataccacagaca

gaattcaagaagtagggactgtgaaaggattatgggtcttcgctatggtc
ttctgtgtctgaagattcaagtgttttagatttctgtctttataaaccgt
atgcagcatctgattttgtgttgataatgacaggtacatatccattgtca
aagagagctcacagagttgtttttgtagtaagggttgcgtatggctgggt
tttattaaattcactgaaggaacaatactaaaacatacaaaaaaaaaata
aattatccaaagaccagcttggcattgcagtttcttcctattataccata
aataatatctaacaactctctcaaagctgggactacattcaaatattgat
tatatagagttaaaaattctaaatttccctgaaaattttggtgttcttta
attttctaagactgtgaaagatatttatggatgaaacataataatttttt
aggaaagaatgggaagtctaaagaggaaaccattaaaaacctttaaccta
aaacatcatgtataagaaaaatgaaaatccaagttgacgttaatatttcc
aatcttaaccagaaacaaatttagctaaaattttaaaattgagaaaaaca
atcaacatgaaatctcactttttgagaacttcagtcctaacttgattgaa
ttctagacaacaaattacttggaaaacttccttgctatgttttatgcttt
aaatattgtttttatgggatagaaagatggttcagtcattaagagcactg
gatgcccttttagaggacccaggttcaattcccagaacacacacagcagg
tcccaacatctgtaactacagtcccagattatctgatatcccttatggct
gctgcgagtaccaggcacacaagcatacattcaggtgaaccactttatac
acataaatacaataaatatgtgttttttatttatatagggtgaagaattt
ataatactgtatctgggaataatattcacctcatccaaacctcatcaaaa
gtccatctctcttcatggcaactcaattggtgttttcaacaattttattt
taaacccgcagaatcctgattaatgctgctaattaatctgggtggtggct
atctaacaactttctacaatggtgcacttattgaatttaaagctattcaa
ttagctgctattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_111373060_111374191
seq2: B6Ng01-250M08.b_45_1168

seq1  GAATTCATTAATTATTCTCATTTCTTGATACAGAGACTCTTTCTTTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATTATTCTCATTTCTTGATACAGAGACTCTTTCTTTGTAG  50

seq1  TCCAGGCTGGCACTTAACTCCTTGTGGAATTAAAGCTCATCTCAAACGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTGGCACTTAACTCCTTGTGGAATTAAAGCTCATCTCAAACGAA  100

seq1  TGATCCTCCTGCCTCAGCCTCTCATGTGCAGATACAATTCCCTCAGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTCCTGCCTCAGCCTCTCATGTGCAGATACAATTCCCTCAGTGAA  150

seq1  CACAGGTTCTCACTCTGGTTCTCTATGTTTTCTTCCCAATAATTTGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTTCTCACTCTGGTTCTCTATGTTTTCTTCCCAATAATTTGTTTT  200

seq1  CTGGGTACTGCTGAGGTCGTTGCTCCCGTTATCTTCAGAGAACGTCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTACTGCTGAGGTCGTTGCTCCCGTTATCTTCAGAGAACGTCCAGG  250

seq1  ACACAATGAAGTCTCTGTATTGTGTTTAATGTCCTTTTCCCCATTATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGAAGTCTCTGTATTGTGTTTAATGTCCTTTTCCCCATTATTCA  300

seq1  GTGGAGTAGTACTTGGAAGAAGTCAGTTCAATTGCAGGCCGATTCTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTAGTACTTGGAAGAAGTCAGTTCAATTGCAGGCCGATTCTGGAA  350

seq1  CTCCTTAGACCCTTGTGATGTGAGCCCTGTTTTTTTCTTTTGAAGAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAGACCCTTGTGATGTGAGCCCTGTTTTTTTCTTTTGAAGAAACT  400

seq1  CATTGTTCCTGTGATCATTGCTGCAGAGAGAGAGAGAGGGAAAGTGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCCTGTGATCATTGCTGCAGAGAGAGAGAGAGGGAAAGTGAGAG  450

seq1  AGAGAGAAAGTGAGAGAGAGTGGGGAAGCTTTCAGCCAGGATTTATTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAGTGAGAGAGAGTGGGGAAGCTTTCAGCCAGGATTTATTTAC  500

seq1  TCTTCTAAGTCTTACTTGTGATAATCAAACCCAATGTAAATCAGGATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAAGTCTTACTTGTGATAATCAAACCCAATGTAAATCAGGATGCT  550

seq1  GGCCATAAAGTATGGGCATGACACCAGAACAATAACAATAAACATTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAAAGTATGGGCATGACACCAGAACAATAACAATAAACATTGTAA  600

seq1  GTCACTAAGAAGCATCCGAGAGAAGGGCACATCTACCACAGATGCAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAAGAAGCATCCGAGAGAAGGGCACATCTACCACAGATGCAGACC  650

seq1  AAAGCAAGCGCATTTAGCTTGCTTGCTTACCTTCTAGCAGCAGTGTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGCGCATTTAGCTTGCTTGCTTACCTTCTAGCAGCAGTGTGTGC  700

seq1  CTGCATGTTCCTGTGTGTTTTCTGTTATGATTCCTTTTATACCCTGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTTCCTGTGTGTTTTCTGTTATGATTCCTTTTATACCCTGTTCT  750

seq1  CTCTGACCCCGTGAAAGCTCATGATACATTTTGATAGTTACTCATTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCCCGTGAAAGCTCATGATACATTTTGATAGTTACTCATTTGCT  800

seq1  AGAATAGCGTCCCAGAGTCTTTTCTGGATTCATGAAGATGACAACACACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGCGTCCCAGAGTCTTTTCTGGATTCATGAAGATGACAACACACC  850

seq1  AACAAGGGAGAACAATGCTTTATTGTGCTTTGTCTCCTCCGTTAGGAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGGAGAACAATGCTTTATTGTGCTTTGTCTCCTCCGTTAGGAAGC  900

seq1  CAATAGCAGGCACTTTGTTTGGGAATGAATAGATGAATGATAATGCGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCAGGCACTTTGTTTGGGAATGAATAGATGAATGATAATGCGCTT  950

seq1  CTCAATAGGACACTGTTTCAAAATCTTTTTTATCTCTGGAACCAG-AGTT  999
      ||| ||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  CTC-ATAGGACACTG-TTCAAAATCTTTTTTATCTCTGGAACCAGAAGTT  998

seq1  TCATTTGTTTCCCCAAGTCAGCTGGTTGATCAAGGGCAAGTGCCAGGGCA  1049
      ||||||||||||||||||||||||| ||||| ||||| ||||| ||||||
seq2  TCATTTGTTTCCCCAAGTCAGCTGG-TGATC-AGGGC-AGTGCAAGGGCA  1045

seq1  AAAGCCAGGCTTGTCCAACAATAGAGTATAGAAGTGCCTTGAGAA-CTCA  1098
      ||||||| |||||| |||||||||||||||||||||| ||||||| ||||
seq2  AAAGCCA-GCTTGT-CAACAATAGAGTATAGAAGTGCTTTGAGAACCTCA  1093

seq1  GGAGGATTCCAGCTGCTGTAG-AATACCACAGACA  1132
      |   |||  |||||||||||| |||||||||||||
seq2  G--AGAT--CAGCTGCTGTAGAAATACCACAGACA  1124


seq1: chr11_111455058_111456212
seq2: B6Ng01-250M08.g_66_1228 (reverse)

seq1  AAATAGCAGCTTAAATGAATAGTTTTAAAATTCAATAAGTGCA-CATTGT  49
      |||||||||| ||| ||||||| ||| |||||||||||||||| ||||||
seq2  AAATAGCAGC-TAATTGAATAGCTTT-AAATTCAATAAGTGCACCATTGT  48

seq1  AG-AAGTTGTTAGATAGCCACACACCCAAGAATAAATAGCAGCATAAATC  98
      || |||||||||||||||||| ||||| ||| ||| ||||||||| ||||
seq2  AGAAAGTTGTTAGATAGCCAC-CACCC-AGATTAATTAGCAGCATTAATC  96

seq1  A-GATTCTGCGGGTTTAAAAT-AAATTGT--GAAACA-CAATTGAGTTGC  143
      | ||||||||||||||||||| |||||||   ||||| ||||||||||||
seq2  AGGATTCTGCGGGTTTAAAATAAAATTGTTGAAAACACCAATTGAGTTGC  146

seq1  CATGAAAGAGAGATGGACTTTGGATGAGGTTGGGATGAGGTGAATA-TAT  192
      |||| |||||||||||||||| ||||||||| |||||||||||||| |||
seq2  CATG-AAGAGAGATGGACTTTTGATGAGGTTTGGATGAGGTGAATATTAT  195

seq1  T-CCAGATACAGTA-TATAAATTC-TCACCATATATAA--TAAAAACACA  237
      | |||||||||||| ||||||||| ||||| |||||||   |||||||||
seq2  TCCCAGATACAGTATTATAAATTCTTCACCCTATATAAATAAAAAACACA  245

seq1  TATTTATTGTATTTATGTGTAT-AAGTGGTTCACCTGAATGTATGCTTGT  286
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATTTATTGTATTTATGTGTATAAAGTGGTTCACCTGAATGTATGCTTGT  295

seq1  GTGCCTGGTACTCGCAGCAGCCATAAGGGATATCAGATAATCTGGGACTG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGGTACTCGCAGCAGCCATAAGGGATATCAGATAATCTGGGACTG  345

seq1  TAGTTACAGATGTTTGGGACCTGCTGTGTGTGTTCTGGGAATTGAACCTG  386
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAGTTACAGATG-TTGGGACCTGCTGTGTGTGTTCTGGGAATTGAACCTG  394

seq1  GGTCCTCTAAAAGGGCATCCAGTGCTCTTAATGACTGAACCATCTTTCTA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCTAAAAGGGCATCCAGTGCTCTTAATGACTGAACCATCTTTCTA  444

seq1  TCCCATAAAAACAATATTTAAAGCATAAAACATAGCAAGGAAGTTTTCCA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAAAAACAATATTTAAAGCATAAAACATAGCAAGGAAGTTTTCCA  494

seq1  AGTAATTTGTTGTCTAGAATTCAATCAAGTTAGGACTGAAGTTCTCAAAA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTTGTTGTCTAGAATTCAATCAAGTTAGGACTGAAGTTCTCAAAA  544

seq1  AGTGAGATTTCATGTTGATTGTTTTTCTCAATTTTAAAATTTTAGCTAAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGATTTCATGTTGATTGTTTTTCTCAATTTTAAAATTTTAGCTAAA  594

seq1  TTTGTTTCTGGTTAAGATTGGAAATATTAACGTCAACTTGGATTTTCATT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTGGTTAAGATTGGAAATATTAACGTCAACTTGGATTTTCATT  644

seq1  TTTCTTATACATGATGTTTTAGGTTAAAGGTTTTTAATGGTTTCCTCTTT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATACATGATGTTTTAGGTTAAAGGTTTTTAATGGTTTCCTCTTT  694

seq1  AGACTTCCCATTCTTTCCTAAAAAATTATTATGTTTCATCCATAAATATC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCCCATTCTTTCCTAAAAAATTATTATGTTTCATCCATAAATATC  744

seq1  TTTCACAGTCTTAGAAAATTAAAGAACACCAAAATTTTCAGGGAAATTTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGTCTTAGAAAATTAAAGAACACCAAAATTTTCAGGGAAATTTA  794

seq1  GAATTTTTAACTCTATATAATCAATATTTGAATGTAGTCCCAGCTTTGAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTAACTCTATATAATCAATATTTGAATGTAGTCCCAGCTTTGAG  844

seq1  AGAGTTGTTAGATATTATTTATGGTATAATAGGAAGAAACTGCAATGCCA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGTTAGATATTATTTATGGTATAATAGGAAGAAACTGCAATGCCA  894

seq1  AGCTGGTCTTTGGATAATTTATTTTTTTTTTGTATGTTTTAGTATTGTTC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTCTTTGGATAATTTATTTTTTTTTTGTATGTTTTAGTATTGTTC  944

seq1  CTTCAGTGAATTTAATAAAACCCAGCCATACGCAACCCTTACTACAAAAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTGAATTTAATAAAACCCAGCCATACGCAACCCTTACTACAAAAA  994

seq1  CAACTCTGTGAGCTCTCTTTGACAATGGATATGTACCTGTCATTATCAAC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTGTGAGCTCTCTTTGACAATGGATATGTACCTGTCATTATCAAC  1044

seq1  ACAAAATCAGATGCTGCATACGGTTTATAAAGACAGAAATCTAAAACACT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCAGATGCTGCATACGGTTTATAAAGACAGAAATCTAAAACACT  1094

seq1  TGAATCTTCAGACACAGAAGACCATAGCGAAGACCCATAATCCTTTCACA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTCAGACACAGAAGACCATAGCGAAGACCCATAATCCTTTCACA  1144

seq1  GTCCCTACTTCTTGAATTC  1155
      |||||||||||||||||||
seq2  GTCCCTACTTCTTGAATTC  1163


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