BAC Information

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BAC

Clone NameB6Ng01-251G15
Chromosome11 (Build37)
Map Location 116,576,124 - 116,717,319
singlet/doubletdoublet
Overlap geneLOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11
Upstream geneLOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2
Downstream geneMgat5b, LOC100042036, Sec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251G15.bB6Ng01-251G15.g
ACCGA058681GA058682
length1,073872
definitionB6Ng01-251G15.b B6Ng01-251G15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,716,238 - 116,717,319)(116,576,124 - 116,576,929)
sequence
gaattctttgatgtaagttattggaaagaggaggaaagagaaaaaaggaa
accctgaagccaggcctgatgctacaggtttctaagtttatcactaggga
ggtgtagatacctgaagttcaaggttatcttgtattatgctacaagctcc
acgccagacaagagaggaggcaattggagggagagaggttgtatatgtgc
atgtatttagtacatttccagctacaaatccaaagtactacagacctgtg
aagttttcattttctatgtctaaacagcataaaaatctttttttgttttg
ttttgtttttttgagacagggtttctctgtatagccctggctgtcctgga
acttactctgtagaccaggctggccttgaactcagaaattcacctgcctc
tgcctcccaagtgctggaattaaagacgtgcgtcactactgctcagcttc
agcataaaaatctttgttttttttttttttttttttctttttgttgtttt
tcgagaaagggtttctctgtatagccttggctgtcctggaactcactttg
tagaccaggctggcctcaaactcagaaatccgccgcctctgcctccgagt
gctggcattaaaggcgtgcgccaccacgcccagcttcagcataaaaatct
taaagcttctgatgaaattataaattgagaatgagattacaaagcctcaa
aaatccaatgtttcaacaactacagcactgttcaggattagaacatgatt
ttgacaagacttgcatgcatattgagccagaagcactatactgcctgcat
agccatgatcttagtaaagaacctggggtcacagagctaacttgctgaac
gtagcaaagcatcccagttctgaagccaggctttcaatcccaagcctcct
aattctacagaagacctttagtcatcatcgtaaaagaattaccatcacgc
ttatttattttgggattcacggcatgcaccccatgcctgctctgtaactt
tatactacatttaaatttatgttgtatgtaggagagtgttcctcttgctt
gaagacaccatgaaactgcagga
gaattccattacctgtgtacacaggaatctcttatatgaccgtaatatag
cttatgatcgccttgctcccttcacaggcttagcaggcgcttggttgtca
gaaggaccaggtagccacaaagattcatcagccatcacatacatattcat
gatcgccccaacttactcctatgttaactggaggattggggtttaggccc
aatatatataattagtccccgttacctgtacagagagagcagagcaagga
acacagttttagcatccaaaggctcctcagactgttgaactatggcttcc
cttaccagacaatttcaatggttttctcatcgtgtcctctcctgcagaac
atgagtataacctcagccccatcttaacacctctgactccattctgatgt
tacaacatccctgtagttcacaggccaactcaattcaacgggtttttttc
cacagtccaaagcctttcagcagctgtggtctctgcttcgtaagcattta
aaaatttaaatttagtaagatattatgtaatctgtccctgggagtcctca
tagcccccttttgtttcaaaagtatcttttttttttttgagtgagataag
atcttaacaatgaacaggcaaaaggttgtttcattttattaggaacataa
gcaggagtgttgtaagttgcttttttttttttgtataagtagcccattag
agccttagtctctaataaatgtgtaattacagaatcagccttcttcagaa
ttcaaggcagattccagttgaaatccagggtatgttatcaatactataat
gtatagatttttaatttttccaaatttctgctgaacaaaatacatcaaat
tttgacaaatttttattttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116716238_116717319
seq2: B6Ng01-251G15.b_46_1118 (reverse)

seq1  TCCTGCAGGTTTTCAT-GTGTCTTCCACGCAGGA-GAACACTCTCCTACC  48
      ||||||||  |||||| ||||||| || ||| || ||||||||||||| |
seq2  TCCTGCAG--TTTCATGGTGTCTT-CAAGCAAGAGGAACACTCTCCTA-C  46

seq1  ATACAAACATAAATTTTAAAATGTAGTAATAAAGTTACAGAGCAGGCATG  98
      |||| |||||||||||  ||||||||| ||||||||||||||||||||| 
seq2  ATAC-AACATAAATTT--AAATGTAGT-ATAAAGTTACAGAGCAGGCAT-  91

seq1  GGGGTGCATGCCGTGAATCCCAAAATAAATAAGCGTGATGGTAAATTCTT  148
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGGGTGCATGCCGTGAATCCCAAAATAAATAAGCGTGATGGT-AATTCTT  140

seq1  TTACGATGATGACTAAAGGTCTTCTGTAGAATTAGGAGGCTTTGGGATTG  198
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTACGATGATGACTAAAGGTCTTCTGTAGAATTAGGAGGC-TTGGGATTG  189

seq1  AAAGCCTGGCTTCAGAACTGGGATGCTTTGCTACGTTCAGCAAGTTAGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTGGCTTCAGAACTGGGATGCTTTGCTACGTTCAGCAAGTTAGCT  239

seq1  CTGTGACCCCAGGTTCTTTACTAAGATCATGGCTATGCAGGCAGTATAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACCCCAGGTTCTTTACTAAGATCATGGCTATGCAGGCAGTATAGT  289

seq1  GCTTCTGGCTCAATATGCATGCAAGTCTTGTCAAAATCATGTTCTAATCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGCTCAATATGCATGCAAGTCTTGTCAAAATCATGTTCTAATCC  339

seq1  TGAACAGTGCTGTAGTTGTTGAAACATTGGATTTTTGAGGCTTTGTAATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTGCTGTAGTTGTTGAAACATTGGATTTTTGAGGCTTTGTAATC  389

seq1  TCATTCTCAATTTATAATTTCATCAGAAGCTTTAAGATTTTTATGCTGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCAATTTATAATTTCATCAGAAGCTTTAAGATTTTTATGCTGAA  439

seq1  GCTGGGCGTGGTGGCGCACGCCTTTAATGCCAGCACTCGGAGGCAGAGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCGTGGTGGCGCACGCCTTTAATGCCAGCACTCGGAGGCAGAGGC  489

seq1  GGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG  539

seq1  ACAGCCAAGGCTATACAGAGAAACCCTTTCTCGAAAAACAACAAAAAGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAGGCTATACAGAGAAACCCTTTCTCGAAAAACAACAAAAAGAA  589

seq1  AAAAAAAAAAAAAAAAAACAAAGATTTTTATGCTGAAGCTGAGCAGTAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAACAAAGATTTTTATGCTGAAGCTGAGCAGTAGT  639

seq1  GACGCACGTCTTTAATTCCAGCACTTGGGAGGCAGAGGCAGGTGAATTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCACGTCTTTAATTCCAGCACTTGGGAGGCAGAGGCAGGTGAATTTC  689

seq1  TGAGTTCAAGGCCAGCCTGGTCTACAGAGTAAGTTCCAGGACAGCCAGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAAGGCCAGCCTGGTCTACAGAGTAAGTTCCAGGACAGCCAGGG  739

seq1  CTATACAGAGAAACCCTGTCTCAAAAAAACAAAACAAAACAAAAAAAGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAGAGAAACCCTGTCTCAAAAAAACAAAACAAAACAAAAAAAGAT  789

seq1  TTTTATGCTGTTTAGACATAGAAAATGAAAACTTCACAGGTCTGTAGTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCTGTTTAGACATAGAAAATGAAAACTTCACAGGTCTGTAGTAC  839

seq1  TTTGGATTTGTAGCTGGAAATGTACTAAATACATGCACATATACAACCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATTTGTAGCTGGAAATGTACTAAATACATGCACATATACAACCTC  889

seq1  TCTCCCTCCAATTGCCTCCTCTCTTGTCTGGCGTGGAGCTTGTAGCATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCCAATTGCCTCCTCTCTTGTCTGGCGTGGAGCTTGTAGCATAA  939

seq1  TACAAGATAACCTTGAACTTCAGGTATCTACACCTCCCTAGTGATAAACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGATAACCTTGAACTTCAGGTATCTACACCTCCCTAGTGATAAACT  989

seq1  TAGAAACCTGTAGCATCAGGCCTGGCTTCAGGGTTTCCTTTTTTCTCTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACCTGTAGCATCAGGCCTGGCTTCAGGGTTTCCTTTTTTCTCTTT  1039

seq1  CCTCCTCTTTCCAATAACTTACATCAAAGAATTC  1082
      ||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTTTCCAATAACTTACATCAAAGAATTC  1073

seq1: chr11_116576124_116576929
seq2: B6Ng01-251G15.g_69_876

seq1  GAATTCCATTACCTGTGTACACAGGAATCTCTTATATGACCGTAATATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTACCTGTGTACACAGGAATCTCTTATATGACCGTAATATAG  50

seq1  CTTATGATCGCCTTGCTCCCTTCACAGGCTTAGCAGGCGCTTGGTTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGATCGCCTTGCTCCCTTCACAGGCTTAGCAGGCGCTTGGTTGTCA  100

seq1  GAAGGACCAGGTAGCCACAAAGATTCATCAGCCATCACATACATATTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACCAGGTAGCCACAAAGATTCATCAGCCATCACATACATATTCAT  150

seq1  GATCGCCCCAACTTACTCCTATGTTAACTGGAGGATTGGGGTTTAGGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGCCCCAACTTACTCCTATGTTAACTGGAGGATTGGGGTTTAGGCCC  200

seq1  AATATATATAATTAGTCCCCGTTACCTGTACAGAGAGAGCAGAGCAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATAATTAGTCCCCGTTACCTGTACAGAGAGAGCAGAGCAAGGA  250

seq1  ACACAGTTTTAGCATCCAAAGGCTCCTCAGACTGTTGAACTATGGCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTTTAGCATCCAAAGGCTCCTCAGACTGTTGAACTATGGCTTCC  300

seq1  CTTACCAGACAATTTCAATGGTTTTCTCATCGTGTCCTCTCCTGCAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCAGACAATTTCAATGGTTTTCTCATCGTGTCCTCTCCTGCAGAAC  350

seq1  ATGAGTATAACCTCAGCCCCATCTTAACACCTCTGACTCCATTCTGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATAACCTCAGCCCCATCTTAACACCTCTGACTCCATTCTGATGT  400

seq1  TACAACATCCCTGTAGTTCACAGGCCAACTCAATTCAACGGGTTTTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACATCCCTGTAGTTCACAGGCCAACTCAATTCAACGGGTTTTTTTC  450

seq1  CACAGTCCAAAGCCTTTCAGCAGCTGTGGTCTCTGCTTCGTAAGCATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCCAAAGCCTTTCAGCAGCTGTGGTCTCTGCTTCGTAAGCATTTA  500

seq1  AAAATTTAAATTTAGTAAGATATTATGTAATCTGTCCCTGGGAGTCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAATTTAGTAAGATATTATGTAATCTGTCCCTGGGAGTCCTCA  550

seq1  TAGCCCCCTTTTGTTTCAAAAGTATCTTTTTTTTTTTTGAGTGAGATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCCTTTTGTTTCAAAAGTATCTTTTTTTTTTTTGAGTGAGATAAG  600

seq1  ATCTTAACAATGAACAGGCAAAAGGTTGTTTCATTTTATTAGGAACATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAACAATGAACAGGCAAAAGGTTGTTTCATTTTATTAGGAACATAA  650

seq1  GCAGGAGTGTTGTAAGTTGCTTTTTTTTTTTTGTATAAGTAGCCCATTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGTGTTGTAAGTTGCTTTTTTTTTTTTGTATAAGTAGCCCATTAG  700

seq1  AGCCTTAGTCTCTAATAAATGTGTAATTACAGAATCAGCCTTC-TCAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCCTTAGTCTCTAATAAATGTGTAATTACAGAATCAGCCTTCTTCAGAA  750

seq1  TTCAAGGCAGATTCCAGTTGAAATCCAGGGTATG-TATCAATACTATAAT  798
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCAAGGCAGATTCCAGTTGAAATCCAGGGTATGTTATCAATACTATAAT  800

seq1  GTATAGAT  806
      ||||||||
seq2  GTATAGAT  808