BAC Information

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BAC

Clone NameB6Ng01-251K01
Chromosome11 (Build37)
Map Location 86,693,756 - 86,694,843
singlet/doubletsinglet
Overlap genenone
Upstream geneTbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40
Downstream geneYpel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251K01.bB6Ng01-251K01.g
ACCGA058835GA058836
length9761,083
definitionB6Ng01-251K01.b B6Ng01-251K01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aattgctctcagctacttagtgagtttgcatccagcctgggctacatgag
gcccagagagcaaacagcacctgtgggctacccatggacaaacttccaag
gagcttgggttgtattgggctgagggggacggggctccgtggccggacac
ttgtttaattcccagcattaacaaatgaataaagtaaacaaactaacaag
cagtagtgttgtttaagacattcgaagactgacgacaggaaactcctggt
ctggtgtgctgccagtgaatctacaggaagtccctgcacagccacaggga
gaacaaaggggctgggtaagaaggtccagcctggctaacctgtgagacct
tggaaaatctgaggagacaagtctgtgtttgccagacatgggagagcaga
atttaggctctatggccaggtagttgtttgttttaatttaattttctttc
tttgttttatctttctttctttcttcctttctttcttttttctttttctt
tcttttttttttttttttccgaaacagggtttctctgtatagccctggct
gtcctggaactcactttgtagaccaggctggccttgaactcagaaatctg
cctgcctctgcctcccaagtgctggaattaaaggcatgtgccaccaccgc
ccggctcttctcttctcttctcttctcttctcttctcttctcttctcttc
tcttctcttttcttttctctttctttttttccttttgaatctttccgtgt
aaaggccctgactctcctgaaactcaccatgtagaccaggctgacatgga
actgacaagaaaactgcctgctcctgcctcttgaactctgggatcaaaag
gtgtgtgcccaccacacctggcagttaattttatattaaagaaaatggaa
actcaagcaagaagtgggcagttccacatcttgaatccagtgtttatgag
ggtgaaggtaaggaggaactgccatg
gaattcatgtgggtcctcatgcctcagtctccagagagccaggattgcat
acgctggctctggtggtcacattttgcatagacatgttcacatgttttcc
tgcctgtctcctttatctttttctctaggcattgaccaagagtgggatta
attggttatgttgtaactccaggttgctgccttgaaaaatttaaaaaaaa
aaaaaaaagcagggccagagagataactcagtggttaacagcggttacaa
gtgcttgctggtcttgcagaggactggagttcgggtcccagcaccccgac
attggacagctcaccacgtgtaactccaagtccagaggatctgacgttgg
cacgcttcggagctactatgaactgacacaattttccttccactcatcct
ctactgtcacccagcaccaagagtattatttgaaactcaaattgtgttaa
acgtggcaagtcagagctcaaagacttgaaaggcctttaatataatctgc
atgccacaaaatatgacggactacgagaatatgaaactctaaaatacagg
ctgctgtcaggtatttttaaatacctttcagataatctgtcagcacagtg
tgtttgctacgtgctcccggggaagtctgctgacaggccctttggtttta
tgagaagtttccttgtcgagagtttgcttgtaacctcgtgttgatgtatt
atgatagcgcggcttcctaagaaggccaaggggctttgagctgcatatgt
tattttgtttgtaacaagagtctatttctttatttcttcttggtactggg
gatagaacccagctcctcaagcaaggcatgatctttgtcgctgagtcaca
acccagctcgagatttgaagtcacagagaaggaactggacattaatacag
atctggctgctggatgctctgcgggtttatacctaagtgttgagggaatg
tgacactagagaaattctagtagctcagatggagccagtgtccagggaga
gagagtagaaagttctggacagtttcagctacacagtggagttcaggcca
gctatacacctgtctcaaaacaaagcaaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_86693756_86694843
seq2: B6Ng01-251K01.g_64_1146

seq1  GAATTCATGTGGGTCCTCATGCCTCAGTCTCCAGAGAGCCAGGATTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGGGTCCTCATGCCTCAGTCTCCAGAGAGCCAGGATTGCAT  50

seq1  ACGCTGGCTCTGGTGGTCACATTTTGCATAGACATGTTCACATGTTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGGCTCTGGTGGTCACATTTTGCATAGACATGTTCACATGTTTTCC  100

seq1  TGCCTGTCTCCTTTATCTTTTTCTCTAGGCATTGACCAAGAGTGGGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTCTCCTTTATCTTTTTCTCTAGGCATTGACCAAGAGTGGGATTA  150

seq1  ATTGGTTATGTTGTAACTCCAGGTTGCTGCCTTGAAAAATTTAAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTATGTTGTAACTCCAGGTTGCTGCCTTGAAAAATTTAAAAAAAA  200

seq1  AAAAAAAAGCAGGGCCAGAGAGATAACTCAGTGGTTAACAGCGGTTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGCAGGGCCAGAGAGATAACTCAGTGGTTAACAGCGGTTACAA  250

seq1  GTGCTTGCTGGTCTTGCAGAGGACTGGAGTTCGGGTCCCAGCACCCCGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGCTGGTCTTGCAGAGGACTGGAGTTCGGGTCCCAGCACCCCGAC  300

seq1  ATTGGACAGCTCACCACGTGTAACTCCAAGTCCAGAGGATCTGACGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACAGCTCACCACGTGTAACTCCAAGTCCAGAGGATCTGACGTTGG  350

seq1  CACGCTTCGGAGCTACTATGAACTGACACAATTTTCCTTCCACTCATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTTCGGAGCTACTATGAACTGACACAATTTTCCTTCCACTCATCCT  400

seq1  CTACTGTCACCCAGCACCAAGAGTATTATTTGAAACTCAAATTGTGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTCACCCAGCACCAAGAGTATTATTTGAAACTCAAATTGTGTTAA  450

seq1  ACGTGGCAAGTCAGAGCTCAAAGACTTGAAAGGCCTTTAATATAATCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGCAAGTCAGAGCTCAAAGACTTGAAAGGCCTTTAATATAATCTGC  500

seq1  ATGCCACAAAATATGACGGACTACGAGAATATGAAACTCTAAAATACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACAAAATATGACGGACTACGAGAATATGAAACTCTAAAATACAGG  550

seq1  CTGCTGTCAGGTATTTTTAAATACCTTTCAGATAATCTGTCAGCACAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTCAGGTATTTTTAAATACCTTTCAGATAATCTGTCAGCACAGTG  600

seq1  TGTTTGCTACGTGCTCCCGGGGAAGTCTGCTGACAGGCCCTTTGGTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTACGTGCTCCCGGGGAAGTCTGCTGACAGGCCCTTTGGTTTTA  650

seq1  TGAGAAGTTTCCTTGTCGAGAGTTTGCTTGTAACCTCGTGTTGATGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTTTCCTTGTCGAGAGTTTGCTTGTAACCTCGTGTTGATGTATT  700

seq1  ATGATAGCGCGGCTTCCTAAGAAGGCCAAGGGGCTTTGAGCTGCATATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGCGCGGCTTCCTAAGAAGGCCAAGGGGCTTTGAGCTGCATATGT  750

seq1  TATTTTGTTTGTAACAAGAGTCTATTTCTTTATTTCTTCTTGGTACTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTTGTAACAAGAGTCTATTTCTTTATTTCTTCTTGGTACTGGG  800

seq1  GATAGAACCCAGCTCCTCAAGCAAGGCATGATCTTTGTCGCTGAGTCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAACCCAGCTCCTCAAGCAAGGCATGATCTTTGTCGCTGAGTCACA  850

seq1  ACCCAGCTCGAGATTTGAAGTCACAGAGAAGGAACTGGACATTAATACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTCGAGATTTGAAGTCACAGAGAAGGAACTGGACATTAATACAG  900

seq1  ATCTGGCTGCTGGATGCTCTGCGGTTTTATAACCTAAGTGGTTGAGGGAA  950
      |||||||||||||||||||||||| ||||| |||||||| ||||||||||
seq2  ATCTGGCTGCTGGATGCTCTGCGGGTTTAT-ACCTAAGT-GTTGAGGGAA  948

seq1  TGTGACACTAGGAGAAAATTCTAAGTAGCTCAGATGGAGCCCAGTGTCCC  1000
      |||||||||| ||| ||||||| |||||||||||||||| ||||||||| 
seq2  TGTGACACTA-GAG-AAATTCT-AGTAGCTCAGATGGAG-CCAGTGTCC-  993

seq1  AGGGGAGAGAGAGTAGAAAGTTCTGGGCCAGTTTCAGCTACACAGT-GAG  1049
        |||||||||||||||||||||| || |||||||||||||||||| |||
seq2  -AGGGAGAGAGAGTAGAAAGTTCT-GGACAGTTTCAGCTACACAGTGGAG  1041

seq1  TTCAAGGCCAGCCTATAACACCCTGTCTCAAA-------AAACAAA  1088
      ||| ||||||| |||| ||| |||||||||||       |||||||
seq2  TTC-AGGCCAG-CTAT-ACA-CCTGTCTCAAAACAAAGCAAACAAA  1083