BAC Information

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BAC

Clone NameB6Ng01-252N06
Chromosome11 (Build37)
Map Location 96,634,478 - 96,765,348
singlet/doubletdoublet
Overlap geneSnx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436
Upstream geneEG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1
Downstream geneCdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252N06.bB6Ng01-252N06.g
ACCGA059719GA059720
length906860
definitionB6Ng01-252N06.b B6Ng01-252N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,764,439 - 96,765,348)(96,634,478 - 96,635,336)
sequence
gaattccagaggcagaggcaggtagatctctgaattccaggccagccagg
accttgtcaaacaacaacaacaacaagaagacgggaagggctgatagtgg
gtgagggatgtaggtctgtgatggatggagttcttacttgcctaatgcgt
tccatccccagcaccagcaaaagtaaataaaaggactcattggccagctt
agactatacagtctagtatagtgaaatatactataccatgtagtgaaatc
ctgtgtcagcacccccaacagccctcagaaaacacacaaaccaccaaacc
aaacaaatacaaatgaactagactaaactcccatcaccaggaggggaagg
aggacgtgtcccctgtgaaccttcagggcctgtctctccactcctttccc
tatctgaggagagcaaagggccattgcttgttctcctggcaatgccattt
cattgtaggcccagttttttgctagcacagctgggcctcgtgagcgccac
ccacacactgggctttggacagactgccctgcatgcactcttgaggagtc
aggtcccaagctgtcttcacattgccatcctgcctggcagagctcagcgc
agcgggagagagtctcaaagctgcagcaagactgcggggcccaggaatac
cagctgacccagattctccctgtgtcctccaaatgcccttcctctctggt
gacagggtcatgcctccgaatagactggccctgagtaaactctgccttag
ccaccctcctctccttccccaggctccaaagaaaccagtttgaatattta
aacttctcctgtgtgtctaataaaagttctgcactatttaatgcccagct
atccatactgtcttggagctgccctctcctctcggcctcccctcccttcc
tcttgc
gaattccaggagccttcattctgcaccctggggtcctgaactcgaactgt
gatcacctcctgcagattagaaaacaaacaaacaaacaaaagccccttca
acttcagttcagctcagccccacagagagaatggtgtttggttttggctt
tggagtcctgctggcaggagctcactaggtagactaactgccttcactgt
gtggcagttctcgcccgtctgcctcctcagtgttgagatcaatgaagcaa
cacacccagcttgcaaggcagctctgaccacacagcagtacccagagttc
cttagtaccaactttcagtcatttcgccattcattcaacaagcatttcct
gatcacgggcgcatgtcaggctctgtgctaagagagaacatgatcaagaa
atgaaattccctcttctccggaatagtacagtgtaggccttggaaggcta
aggcaggagaatcaaaagttcaaggccttacctgaggaacttggtgagac
tcaatcaaccaaccaatcaatcaatcaatcaatcaatcaacaatcagcta
tggacaatggctccccactgtgatcccaacactcaggaagaggcaggagg
attgccatcaagttgagggtcagctgggtccacatggcaagttctaggcc
aaacaggactatatagtgagactctctcaataaataaataaagataaaag
agagctaggaatataaatacatggctcaatgccagagctgagcacttgca
aggccctgagattaatgtgcatggggaaaaggtagacagataaaggacaa
agcattatgatatatatataatatatgttttatatatattatatgtatat
ataaatgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96764439_96765348
seq2: B6Ng01-252N06.b_47_952 (reverse)

seq1  GCAAGAGGAAGGGAGGGGGAGACCGAGAGGAGAGGGCAGCTCC-AGACAG  49
      |||||||||||||| |||||| ||||||||||||||||||||| ||||||
seq2  GCAAGAGGAAGGGA-GGGGAGGCCGAGAGGAGAGGGCAGCTCCAAGACAG  49

seq1  TAATGGATAGCTGGGGCATTAAATAGTGCAGAACTTTTTATTAGACACAC  99
      | |||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  T-ATGGATAGCT-GGGCATTAAATAGTGCAGAAC-TTTTATTAGACACAC  96

seq1  AGGAGAAGTTTAAATATTCAAACTGGTTTTCTTTGGAGCCTGGGGAAGGA  149
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGAGAAGTTTAAATATTCAAACTGG-TTTCTTTGGAGCCTGGGGAAGGA  145

seq1  GAGGAGGGTGGCTAAGGCAGAGTTTACTCAGGGCCAGTCTATTCGGAGGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGTGGCTAAGGCAGAGTTTACTCAGGGCCAGTCTATTCGGAGGC  195

seq1  ATGACCCTGTCACCAGAGAGGAAGGGCATTTGGAGGACACAGGGAGAATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCTGTCACCAGAGAGGAAGGGCATTTGGAGGACACAGGGAGAATC  245

seq1  TGGGTCAGCTGGTATTCCTGGGCCCCGCAGTCTTGCTGCAGCTTTGAGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAGCTGGTATTCCTGGGCCCCGCAGTCTTGCTGCAGCTTTGAGAC  295

seq1  TCTCTCCCGCTGCGCTGAGCTCTGCCAGGCAGGATGGCAATGTGAAGACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCGCTGCGCTGAGCTCTGCCAGGCAGGATGGCAATGTGAAGACA  345

seq1  GCTTGGGACCTGACTCCTCAAGAGTGCATGCAGGGCAGTCTGTCCAAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGACCTGACTCCTCAAGAGTGCATGCAGGGCAGTCTGTCCAAAGC  395

seq1  CCAGTGTGTGGGTGGCGCTCACGAGGCCCAGCTGTGCTAGCAAAAAACTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGTGGGTGGCGCTCACGAGGCCCAGCTGTGCTAGCAAAAAACTG  445

seq1  GGCCTACAATGAAATGGCATTGCCAGGAGAACAAGCAATGGCCCTTTGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACAATGAAATGGCATTGCCAGGAGAACAAGCAATGGCCCTTTGCT  495

seq1  CTCCTCAGATAGGGAAAGGAGTGGAGAGACAGGCCCTGAAGGTTCACAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGATAGGGAAAGGAGTGGAGAGACAGGCCCTGAAGGTTCACAGG  545

seq1  GGACACGTCCTCCTTCCCCTCCTGGTGATGGGAGTTTAGTCTAGTTCATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGTCCTCCTTCCCCTCCTGGTGATGGGAGTTTAGTCTAGTTCATT  595

seq1  TGTATTTGTTTGGTTTGGTGGTTTGTGTGTTTTCTGAGGGCTGTTGGGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTTTGGTTTGGTGGTTTGTGTGTTTTCTGAGGGCTGTTGGGGG  645

seq1  TGCTGACACAGGATTTCACTACATGGTATAGTATATTTCACTATACTAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACACAGGATTTCACTACATGGTATAGTATATTTCACTATACTAGA  695

seq1  CTGTATAGTCTAAGCTGGCCAATGAGTCCTTTTATTTACTTTTGCTGGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGTCTAAGCTGGCCAATGAGTCCTTTTATTTACTTTTGCTGGTG  745

seq1  CTGGGGATGGAACGCATTAGGCAAGTAAGAACTCCATCCATCACAGACCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATGGAACGCATTAGGCAAGTAAGAACTCCATCCATCACAGACCT  795

seq1  ACATCCCTCACCCACTATCAGCCCTTCCCGTCTTCTTGTTGTTGTTGTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCTCACCCACTATCAGCCCTTCCCGTCTTCTTGTTGTTGTTGTTG  845

seq1  TTTGACAAGGTCCTGGCTGGCCTGGAATTCAGAGATCTACCTGCCTCTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAAGGTCCTGGCTGGCCTGGAATTCAGAGATCTACCTGCCTCTGC  895

seq1  CTCTGGAATTC  910
      |||||||||||
seq2  CTCTGGAATTC  906

seq1: chr11_96634478_96635336
seq2: B6Ng01-252N06.g_69_928

seq1  GAATTCCAGGAGCCTTCATTCTGCACCCTGGGGTCCTGAACTCGAACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGCCTTCATTCTGCACCCTGGGGTCCTGAACTCGAACTGT  50

seq1  GATCACCTCCTGCAGATTAGAAAACAAACAAACAAACAAAAGCCCCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCTCCTGCAGATTAGAAAACAAACAAACAAACAAAAGCCCCTTCA  100

seq1  ACTTCAGTTCAGCTCAGCCCCACAGAGAGAATGGTGTTTGGTTTTGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTTCAGCTCAGCCCCACAGAGAGAATGGTGTTTGGTTTTGGCTT  150

seq1  TGGAGTCCTGCTGGCAGGAGCTCACTAGGTAGACTAACTGCCTTCACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCCTGCTGGCAGGAGCTCACTAGGTAGACTAACTGCCTTCACTGT  200

seq1  GTGGCAGTTCTCGCCCGTCTGCCTCCTCAGTGTTGAGATCAATGAAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGTTCTCGCCCGTCTGCCTCCTCAGTGTTGAGATCAATGAAGCAA  250

seq1  CACACCCAGCTTGCAAGGCAGCTCTGACCACACAGCAGTACCCAGAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCAGCTTGCAAGGCAGCTCTGACCACACAGCAGTACCCAGAGTTC  300

seq1  CTTAGTACCAACTTTCAGTCATTTCGCCATTCATTCAACAAGCATTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTACCAACTTTCAGTCATTTCGCCATTCATTCAACAAGCATTTCCT  350

seq1  GATCACGGGCGCATGTCAGGCTCTGTGCTAAGAGAGAACATGATCAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACGGGCGCATGTCAGGCTCTGTGCTAAGAGAGAACATGATCAAGAA  400

seq1  ATGAAATTCCCTCTTCTCCGGAATAGTACAGTGTAGGCCTTGGAAGGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTCCCTCTTCTCCGGAATAGTACAGTGTAGGCCTTGGAAGGCTA  450

seq1  AGGCAGGAGAATCAAAAGTTCAAGGCCTTACCTGAGGAACTTGGTGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGAATCAAAAGTTCAAGGCCTTACCTGAGGAACTTGGTGAGAC  500

seq1  TCAATCAACCAACCAATCAATCAATCAATCAATCAATCAACAATCAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAACCAACCAATCAATCAATCAATCAATCAATCAACAATCAGCTA  550

seq1  TGGACAATGGCTCCCCACTGTGATCCCAACACTCAGGAAGAGGCAGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAATGGCTCCCCACTGTGATCCCAACACTCAGGAAGAGGCAGGAGG  600

seq1  ATTGCCATCAAGTTGAGGGTCAGCTGGGTCCACATGGCAAGTTCTAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCATCAAGTTGAGGGTCAGCTGGGTCCACATGGCAAGTTCTAGGCC  650

seq1  AAACAGGACTATATAGTGAGACTCTCTCAATAAATAAATAAAGATAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGACTATATAGTGAGACTCTCTCAATAAATAAATAAAGATAAAAG  700

seq1  AGAGCTAGGAATATAAATACATGGCTCAATGCCAGAGCTGAGCACTTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAGGAATATAAATACATGGCTCAATGCCAGAGCTGAGCACTTGCA  750

seq1  AGGCCCTGAGATTAATGTGCATGGGGAAAAGGTAGACAGAT-AAGGACAA  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGCCCTGAGATTAATGTGCATGGGGAAAAGGTAGACAGATAAAGGACAA  800

seq1  AGCATTATGATATATATATAATATATGTTTTATATATATTATATGTATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATGATATATATATAATATATGTTTTATATATATTATATGTATAT  850

seq1  ATAAATATAT  859
      |||||| |||
seq2  ATAAATGTAT  860