BAC Information

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BAC

Clone NameB6Ng01-253D16
Chromosome11 (Build37)
Map Location 6,206,712 - 6,207,839
singlet/doubletsinglet
Overlap geneOgdh
Upstream geneZnrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, LOC100042227
Downstream geneZmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253D16.bB6Ng01-253D16.g
ACCGA060020GA060021
length1,1931,133
definitionB6Ng01-253D16.b B6Ng01-253D16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagagctacctggtctacataccaagtttcaaggaagccagggg
ctatacagaaggaccttgtctcaaaataacaacaaaaaccacttgctgct
gctgaaggacccaagttccgtactcagctttcacattgtgcagcctgcaa
tggcctgtgatactccaggagatccatcgctattttctggcctccgtggc
tacctacacacacgtggcagacaaatagagtttaaactttgaaagaaaaa
gattggtggctgggtatagtagcagacatatttaattccagcactcagca
ggcagatgtaggcagaacactcttgagtttgatgccagcctggtctatag
agtgaattccaggccagacaaggacatagaccctatttcaaaaaacaaaa
gatgagccgggcgtggtggctcatgcctttaatcccagcactcgggaggc
agaggcaggtggatctctgagttcgaggccagcctggtctacagagtgag
ttccacgacagccagggctatagagagaaaccctgtcttgaaaaaccaaa
aaaaaaaaaaaaaaaaaaaaaaaagatgggctggagagaccgctcagcag
ttaagagcactgactgcttttctgaaggtcctaagttaaaattctagcaa
ccacatgttgtctcacaaccatctgtagtgagatcgaatgacttcttctg
gtgtgtctgaagaagttcttacatatagtaataaataaatcttttttttt
aaagatttatttatttattttatgtaagtacactgtagctgtcctcagat
actccagaagagggcatcagattttgttacagatggttgggagccaccat
gtggttgctgggatttgaactcgggaccttcggaagaacagtctgcactc
ttaaccactgagccatcttgccagcccaataaataaatcttgtaaaaaaa
aaaaaaaaagactgaggacagtgcttagatgtggtacaaggcacggaaag
tgataagctccgtgtccacacacagcaagagcacagcatggctgagggtg
aggaggcacacgaagactcgtctgttagctcagggctggaatgcctttta
gcctttctcaaggtcctgggaaattgactcaggactttggcatgagctac
agctagtacctggatttctttcgaataggaggcttatcctcag
gaattcacagtcacttttcttgtctctcgtgagagtaaggagctcattta
gtttgtcgtcttgttcccaaaaccttagagcatgatgtagatagttggcc
tttaatgtgtgtttcttgaatttaaccaaaaatggatttttaaaaattgt
ttttacatttattttgagagtggggggtaggtgccatggtatgatgtgga
agtcagaggacagctcttgggagttggttctttccttccactgtgggttc
caggggtcgaacgaactcaggttgccaggcctggtagcaagtgctcttaa
ccacattagccccagaaatggatttttttaaaaaccatttctgtttttgc
taggcatggtgatatacacctttaattccaatgtttgggagacagaggca
ggcagatctctgagttcaaggccagcctgggatatagagggagaccttgt
ctcaaaacaaaaacaccccacccccaatgctttacaactcttttaaatga
aaaaaaaatgtgtattttggactactgtaatagatcagttagtggagcaa
agacatgatttcatgatttgatcccctaatatccatgtaaaaagaggctc
agtggtcagtgcacacctgtagtctcatcacacctagaagggaggtggac
acaataggatctctgggactttttttttctttcagtttttcttactttat
taaaccatactaatattctttcaaggacaaacatacagcccaggatgcta
cagtgagagaatcttattcttatgaaagacatcacaaggcgctctcgtca
gtgatgcttcttaccattattccagggatccagggaagtattcagcccct
agagctaccacaaacgcagcaaatccccatttgaatccttttaattatta
cgcttgtgaaggtgatgctgcctgcaagccaccccatgtatctccaagcc
cattgcaagcctatgggatccctgagcctcgggcagcaagccctcttcta
atggcgtcccttcaattttccactctttgtaatctgggaagtcctttcaa
tttaccatgacatggtccgtgtcatgttctgtgtcctagcagccattgtc
ttggacagccatgtgactttcccgggatctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_6206712_6207839
seq2: B6Ng01-253D16.g_65_1197

seq1  GAATTCACAGTCACTTTTCTTGTCTCTCGTGAGAGTAAGGAGCTCATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTCACTTTTCTTGTCTCTCGTGAGAGTAAGGAGCTCATTTA  50

seq1  GTTTGTCGTCTTGTTCCCAAAACCTTAGAGCATGATGTAGATAGTTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCGTCTTGTTCCCAAAACCTTAGAGCATGATGTAGATAGTTGGCC  100

seq1  TTTAATGTGTGTTTCTTGAATTTAACCAAAAATGGATTTTTAAAAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTGTGTTTCTTGAATTTAACCAAAAATGGATTTTTAAAAATTGT  150

seq1  TTTTACATTTATTTTGAGAGTGGGGGGTAGGTGCCATGGTATGATGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATTTATTTTGAGAGTGGGGGGTAGGTGCCATGGTATGATGTGGA  200

seq1  AGTCAGAGGACAGCTCTTGGGAGTTGGTTCTTTCCTTCCACTGTGGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGGACAGCTCTTGGGAGTTGGTTCTTTCCTTCCACTGTGGGTTC  250

seq1  CAGGGGTCGAACGAACTCAGGTTGCCAGGCCTGGTAGCAAGTGCTCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTCGAACGAACTCAGGTTGCCAGGCCTGGTAGCAAGTGCTCTTAA  300

seq1  CCACATTAGCCCCAGAAATGGATTTTTTTAAAAACCATTTCTGTTTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTAGCCCCAGAAATGGATTTTTTTAAAAACCATTTCTGTTTTTGC  350

seq1  TAGGCATGGTGATATACACCTTTAATTCCAATGTTTGGGAGACAGAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATGGTGATATACACCTTTAATTCCAATGTTTGGGAGACAGAGGCA  400

seq1  GGCAGATCTCTGAGTTCAAGGCCAGCCTGGGATATAGAGGGAGACCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATCTCTGAGTTCAAGGCCAGCCTGGGATATAGAGGGAGACCTTGT  450

seq1  CTCAAAACAAAAACACCCCACCCCCAATGCTTTACAACTCTTTTAAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACAAAAACACCCCACCCCCAATGCTTTACAACTCTTTTAAATGA  500

seq1  AAAAAAAATGTGTATTTTGGACTACTGTAATAGATCAGTTAGTGGAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATGTGTATTTTGGACTACTGTAATAGATCAGTTAGTGGAGCAA  550

seq1  AGACATGATTTCATGATTTGATCCCCTAATATCCATGTAAAAAGAGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGATTTCATGATTTGATCCCCTAATATCCATGTAAAAAGAGGCTC  600

seq1  AGTGGTCAGTGCACACCTGTAGTCTCATCACACCTAGAAGGGAGGTGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCAGTGCACACCTGTAGTCTCATCACACCTAGAAGGGAGGTGGAC  650

seq1  ACAATAGGATCTCTGGGACTTTTTTTTTCTTTCAGTTTTTCTTACTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGGATCTCTGGGACTTTTTTTTTCTTTCAGTTTTTCTTACTTTAT  700

seq1  TAAACCATACTAATATTCTTTCAAGGACAAACATACAGCCCAGGATGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATACTAATATTCTTTCAAGGACAAACATACAGCCCAGGATGCTA  750

seq1  CAGTGAGAGAATCTTATTCTTATGAAAGACATCACAAGGCGCTCTCGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAGAATCTTATTCTTATGAAAGACATCACAAGGCGCTCTCGTCA  800

seq1  GTGATGCTTCTTACCATTATTCCAGGGATCCA-GGAAGTATTCAGCCCCT  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGATGCTTCTTACCATTATTCCAGGGATCCAGGGAAGTATTCAGCCCCT  850

seq1  AGAGCTACCACAAACGCAGCAAATCCCCATTTGAATCCTTTTAA-TATTA  898
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGAGCTACCACAAACGCAGCAAATCCCCATTTGAATCCTTTTAATTATTA  900

seq1  CGCTTGTGAAGGTGATGCTGCCTGCAAAGCCA-CCCATGTATCTCCAAGC  947
      ||||||||||||||||||||||||| |||||| |||||||||||||||| 
seq2  CGCTTGTGAAGGTGATGCTGCCTGC-AAGCCACCCCATGTATCTCCAAG-  948

seq1  CCCATTGCAAGCCTAT-GGATCCCTGAGCCCTCGGGCAGCAAG-CCTCTT  995
      |||||||||||||||| ||||||||||| |||||||||||||| ||||||
seq2  CCCATTGCAAGCCTATGGGATCCCTGAG-CCTCGGGCAGCAAGCCCTCTT  997

seq1  CTAATGGCGTCCCTTCAATTTTCCACTCTTTGTAATCTGGAAGTTCCTTC  1045
      |||||||||||||||||||||||||||||||||||||||| |  ||||| 
seq2  CTAATGGCGTCCCTTCAATTTTCCACTCTTTGTAATCTGGGAAGTCCTTT  1047

seq1  CATTTTACCATGGCCATGTCCGTGTTCATG-TCTGTGT-CTAGCAGCCA-  1092
      || ||||||||| |   ||||||| ||||| ||||||| |||||||||| 
seq2  CAATTTACCATGACATGGTCCGTG-TCATGTTCTGTGTCCTAGCAGCCAT  1096

seq1  TGTCT--GACAGCAATGTGACCTTCCCGGGATACTCTC  1128
      |||||  |||||| ||||||| |||||||||| |||||
seq2  TGTCTTGGACAGCCATGTGACTTTCCCGGGAT-CTCTC  1133