BAC Information

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BAC

Clone NameB6Ng01-253G06
Chromosome13 (Build37)11 (Build37)
Map Location 94,001,706 - 94,002,78568,463,493 - 68,463,656
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMsh3, Dhfr, 6430502M16Rik, 4930405M20Rik, Zfyve16, LOC100039070, Spz1, Serinc5, Ppia-ps13_1124.1, Thbs4, EG624619, EG218444, Papd4
Downstream geneLOC100039163, Homer1, Jmy, EG619883, Bhmt, Bhmt2, Dmgdh, Arsb, Cycs-ps3, Lhfpl2, Scamp1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253G06.bB6Ng01-253G06.g
ACCGA060138GA060139
length1,090953
definitionB6Ng01-253G06.b B6Ng01-253G06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,001,706 - 94,002,785)(68,463,493 - 68,463,656)
sequence
gaattccaatatgaaggatacctgcttggcagtttagcaaagccaaccag
aggaatgggaagacagtgtacagggcaaggaacagacagagactggagca
gcttggcaaagctagcagttgagatcattgtgggcatctagctggagcaa
gcctggaattattttaaaattacacctgcatgtgaccagcaaaagatttc
tcccttgttattgttttctccaaggaaatagttcagccaagaaacaacaa
cccttttaagcagaagttcatttagtaaaacacagtatgtgctccagaga
aagactggagtgagctgatctttagggagatgggtagcagcccattgggt
tctgcactgtagattttaacaaagtttttatgaatgtttttaaggtgggt
ggtatacattcatggtggtaagatgatcgatcctcttgccttccaagttg
tggtagaccagatctcccttttaaggtatttcttcctatgagcctcttga
aaaccaaagctacagtgtaaatgatacagaaatgaaaccaaagtatgtgg
ggaaatgcagacccaccattagcacagcttgtgtctggacagaccacatc
aggccaaacagttccatgtgaggtttattgtaggagaaaagggcaaaggt
ggcagcaaagaaaaagggggcggagagagagagagagagagagagagaga
gagagaggtcagaggggtcggccttttatttagatagtgatgtaactgtc
gtagataaaggtgggaggtgagcaaagtggattctggtgggaatgtgtga
cggttgccttggcaatagatgtgcaggtccctgttgccgatgttgtgatg
tcacggggcttcagagttgatctgcagtgcctgaataccctgatgccaac
atgtggcaactgagaagctccaacttcgattgaaagttcaattgaattgt
gtggaatttgggcttgagtgacacaatttttagttggtctgggtcagttc
agttcaaactcagccccaaaaacctgttcttaatggtcaggtgagatggc
tcaggggctagaggcacttactacccaccagtaccaagcc

gaattcagttacccactaacgtcatcagtaactctgcaggcttctgtcaa
ctcgacaccactagagtcacctgaagaggaaacctcaactcaggaattgc
atgcattgaattggcttttggatgcagtctctgaggaatattttttgatt
aaggattcatggggcagggggtgtccagctcaatgttggccatgccacct
ttgaacaggtggttgtgggttgtgtcagaaagtaagctaggcaaggcagt
cgcaatgttcatctgtaagtcctgcttcaggtcctgcttcaggtcccgtc
caggctttcctcaataatgaactgtaagcactaagccaaataaaccactt
cctcccccaagctgcttttggttattgttttatcaaagcagtgaagaacc
aaacttaatagtcaagtaagaacttgtggcttttttttttttaagttttt
gctgtatacacagaacactgggaaacgggactcacctagcctatactttc
caccagaagatgaacaagacaatactgccatcttgtttcagcactcagac
tatacaagcagctgtctttttagtggtttgtttagctttttttttttttt
tttttttttttttgcatttctgtgccattgtagaagctttcactgcttaa
aatggcccctcagcaaaatgttgaagtgcttctaagtgctacatactcat
ggtggaaagttaatgtgccttatggagaaaagtgtgttagaataagcttg
actcagcataactcatactataattggtcacgtgttcaatgttaaagcag
cacaattaataaatgaagcacacatcactgggtgttgtgctcccagcatt
taggaagcagagacatggatctttagctcagtccaactgagctgcaacat
atgagagaccatgtctataatatagatagatggaaggaaaagagagagag
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_94001706_94002785
seq2: B6Ng01-253G06.b_42_1131

seq1  GAATTCCAATATGAAGGATACCTGCTTGGCAGTTTAGCAAAGCCAACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATATGAAGGATACCTGCTTGGCAGTTTAGCAAAGCCAACCAG  50

seq1  AGGAATGGGAAGACAGTGTACAGGGCAAGGAACAGACAGAGACTGGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGGAAGACAGTGTACAGGGCAAGGAACAGACAGAGACTGGAGCA  100

seq1  GCTTGGCAAAGCTAGCAGTTGAGATCATTGTGGGCATCTAGCTGGAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCAAAGCTAGCAGTTGAGATCATTGTGGGCATCTAGCTGGAGCAA  150

seq1  GCCTGGAATTATTTTAAAATTACACCTGCATGTGACCAGCAAAAGATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAATTATTTTAAAATTACACCTGCATGTGACCAGCAAAAGATTTC  200

seq1  TCCCTTGTTATTGTTTTCTCCAAGGAAATAGTTCAGCCAAGAAACAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGTTATTGTTTTCTCCAAGGAAATAGTTCAGCCAAGAAACAACAA  250

seq1  CCCTTTTAAGCAGAAGTTCATTTAGTAAAACACAGTATGTGCTCCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTAAGCAGAAGTTCATTTAGTAAAACACAGTATGTGCTCCAGAGA  300

seq1  AAGACTGGAGTGAGCTGATCTTTAGGGAGATGGGTAGCAGCCCATTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGGAGTGAGCTGATCTTTAGGGAGATGGGTAGCAGCCCATTGGGT  350

seq1  TCTGCACTGTAGATTTTAACAAAGTTTTTATGAATGTTTTTAAGGTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACTGTAGATTTTAACAAAGTTTTTATGAATGTTTTTAAGGTGGGT  400

seq1  GGTATACATTCATGGTGGTAAGATGATCGATCCTCTTGCCTTCCAAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATACATTCATGGTGGTAAGATGATCGATCCTCTTGCCTTCCAAGTTG  450

seq1  TGGTAGACCAGATCTCCCTTTTAAGGTATTTCTTCCTATGAGCCTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGACCAGATCTCCCTTTTAAGGTATTTCTTCCTATGAGCCTCTTGA  500

seq1  AAACCAAAGCTACAGTGTAAATGATACAGAAATGAAACCAAAGTATGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAGCTACAGTGTAAATGATACAGAAATGAAACCAAAGTATGTGG  550

seq1  GGAAATGCAGACCCACCATTAGCACAGCTTGTGTCTGGACAGACCACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGCAGACCCACCATTAGCACAGCTTGTGTCTGGACAGACCACATC  600

seq1  AGGCCAAACAGTTCCATGTGAGGTTTATTGTAGGAGAAAAGGGCAAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAACAGTTCCATGTGAGGTTTATTGTAGGAGAAAAGGGCAAAGGT  650

seq1  GGCAGCAAAGAAAAAGGGGGCGGAGAGAGAGAGAGAGAGAGAGAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAAAGAAAAAGGGGGCGGAGAGAGAGAGAGAGAGAGAGAGAGAGA  700

seq1  GAGAGAGGTCAGAGGGGTCGGCCTTTTATTTAGATAGTGATGTAACTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGTCAGAGGGGTCGGCCTTTTATTTAGATAGTGATGTAACTGTC  750

seq1  GTAGATAAAGGTGGGAGGTGAGCAAAGTGGATTCTGGTGGGAATGTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAAAGGTGGGAGGTGAGCAAAGTGGATTCTGGTGGGAATGTGTGA  800

seq1  CGGTTGCCTTGGCAATAGATGTGCAGGTCCCTGTTGCCGATG-TGTGATG  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CGGTTGCCTTGGCAATAGATGTGCAGGTCCCTGTTGCCGATGTTGTGATG  850

seq1  TCAC-GGGCTTCAGAGTTGATCTGCAGTG-CTG-ATACCCTGATGCCAAC  896
      |||| |||||||||||||||||||||||| ||| ||||||||||||||||
seq2  TCACGGGGCTTCAGAGTTGATCTGCAGTGCCTGAATACCCTGATGCCAAC  900

seq1  ATGTGGCAACTGAGAAGCTCCAAC-TCGATTGAAAGTTTCAATTGAATTG  945
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  ATGTGGCAACTGAGAAGCTCCAACTTCGATTGAAAG-TTCAATTGAATTG  949

seq1  TGTGGAATTT-GGCTTGAGTGACACAA-TTTTAGTTAGGTCT-GGTCAGT  992
      |||||||||| |||||||||||||||| |||||||| ||||| |||||||
seq2  TGTGGAATTTGGGCTTGAGTGACACAATTTTTAGTT-GGTCTGGGTCAGT  998

seq1  TCAGTCAAAACTCAGCCC--AAAAACTGGTCTTAAGGGTCA-GTGAGATG  1039
      |||||  |||||||||||  |||| ||| |||||| ||||| ||||||||
seq2  TCAGTTCAAACTCAGCCCCAAAAACCTGTTCTTAATGGTCAGGTGAGATG  1048

seq1  GCTCAGGGGCTAGAGGCACTTACTACCCACCAGTA-CAAGCC  1080
      ||||||||||||||||||||||||||||||||||| ||||||
seq2  GCTCAGGGGCTAGAGGCACTTACTACCCACCAGTACCAAGCC  1090


seq1: chr11_68463493_68463656
seq2: B6Ng01-253G06.g_641_1017 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TCTCTCTCTCTCTTTTCCTTCCATCTATCTATATTATAGACATGGTCTCT  50

seq1  --------------------------------------------------  0
                                                        
seq2  CATATGTTGCAGCTCAGTTGGACTGAGCTAAAGATCCATGTCTCTGCTTC  100

seq1  ------------------TCTCTC-----TCTCT-CTTTGTTTTTAAA--  24
                         | | |     | | | |||  ||| | ||  
seq2  CTAAATGCTGGGAGCACAACACCCAGTGATGTGTGCTTCATTTATTAATT  150

seq1  -CACATCCTT-ACAGTGAATA-------GAAGATGGGAGGGG----GCTG  61
         |  | || ||| |||| |        |  || | | | |    ||||
seq2  GTGCTGCTTTAACATTGAACACGTGACCAATTATAGTATGAGTTATGCTG  200

seq1  AAGACAAATCTGTT--------CTGTTCTTCATA----GCCTTAGC---C  96
       || |||   | ||        || |||| ||||     | ||| |   |
seq2  -AGTCAAGCTTATTCTAACACACTTTTCTCCATAAGGCACATTAACTTTC  249

seq1  AACCATCTG---GTAGC---------------------------------  110
       |||||  |   |||||                                 
seq2  CACCATGAGTATGTAGCACTTAGAAGCACTTCAACATTTTGCTGAGGGGC  299

seq1  ---TTGAAG--------------ACAAAG-------AAGACAAAAAAAAA  136
         || |||              |||| |       ||  ||||||||||
seq2  CATTTTAAGCAGTGAAAGCTTCTACAATGGCACAGAAATGCAAAAAAAAA  349

seq1  AAAAAAAAAAAAAAAAAAACTAAACAAA  164
      |||||||||||||||||| |||||||||
seq2  AAAAAAAAAAAAAAAAAAGCTAAACAAA  377


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