BAC Information

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BAC

Clone NameB6Ng01-253K20
Chromosome11 (Build37)
Map Location 3,590,007 - 3,753,857
singlet/doubletdoublet
Overlap geneMorc2a, LOC664900, Osbp2
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1
Downstream geneLOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253K20.bB6Ng01-253K20.g
ACCGA060346GA060347
length1,145932
definitionB6Ng01-253K20.b B6Ng01-253K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,590,007 - 3,591,155)(3,752,925 - 3,753,857)
sequence
gaattctggttccagtcccaactcttcacactcctgttcaagactgattt
tgtactcttgatccaaaccaccttgggatttgtatccatcaaggcaaggc
tgccaccttgtgtcctggggtctctgcagaagatggggaagtgttggtga
gggaactgtgcacatatggctggaagtgcctgcttgagttctgccatcag
gttgtttaggggggatagcattcagaagttcttctctggaacattctcca
atagatgggttttaagttggtgcacttacccccacggctgcccccatcca
actttctgttgaccctatccaggcagagtatgatccatttttttccataa
acccactgtttaaaaggaatttggccctgcatttttattggcaggtaata
ctcattttgatttttttttttttttacttacacatgtaatcaaaatgtgt
tactataaatttctactggtgagactcctgcgttcagtacattcttacgt
gaatcacaagacttttctcttcattctgttacagctccaccgttcgtttt
agctttaacttttccagatttaactaatccagcctcaacttttctgagtg
ttgggtctttcctgggaacatcatggaatagctgacctggaacattttga
tgataaggcattcactggctctaagggagaagtgtggggtttaagatgct
aagtaacagtgggtggacgtggtaagaatttaaatactacaaaagcctga
acatgaaaaaaggactctcttctacctgatccctaagttttccctggaga
tcagaatatttatcttgggcacccagctacacatctgccctcttgggttt
ccttacattatttgccaagaacatattgtttcagaatggccagtatgggg
tctactttgttctgaaccatcacagggcatttcattatcttggttgtgct
gtcatgaaccatatacttaacaattgtacacctgtgagaaagctgtggta
tgtggtgttgcctttctccattaacatttatataaagggataagttcaga
agctatcattctgctcttcagcatcttcagttcactcaattacctgttag
atctcaattctacctttcactattagtaaaagggatttaggtgcc
gaattctgatcattgagcaatattttgctcctcctggatcctcatcctgt
gccatacctctgcatatttcacaccgatttgactcctaccgtttgacagc
attcttggcccactgcctgaaaccaaataggagcagatggccttgcagag
ctggcaggggacactgcctgccagactgtgttgttctctgatggatgtgg
gcactgctctgatatggggtttggcttccctgagttcactgagtacacac
agcattcactgtccctgccagctgtccccctccaactcttcctgggtgtg
gcctgcctcctttcccctccataacggtatgtcttttcttttctttcttt
tttttttcttttctctttttttggttttttgagacagggtttctgtgtat
atccctagctgtcctggaactcactttgtagaccaggctggcctcaaact
cagagatccacctgcctctgcctcccgagggctgggattaaaggtgtgcg
ccaccacacccatcacgcccggcggtacgtcttttcttattctcctcggg
cttcacaccagccattgcctaggatagagggtgctcattacttgatgcca
aaatcttggcctggcaacaataccaaggtcatctgggtgttcctgggttg
gatctacccagttccttagcaaggctctggaggagtcatgttcaggatga
ttctgtgtagtggcatttggccacgcacactgttagcgaggtgtgggctt
cctccccacaccagagcaggagctgtgtctttatcatatagggtcctctg
ggatgcccggaaccttggagactctcaaacgtcagagaagtggttttttt
tttttttgtttgtttgtttgttttttccattttttatagtatttacctca
tttacatttccaatgctataccaaaagtcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3590007_3591155
seq2: B6Ng01-253K20.b_45_1189

seq1  GAATTCTGGTTCCAGTCCCAACTCTTCACACTCCTGTTCAAGACTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTTCCAGTCCCAACTCTTCACACTCCTGTTCAAGACTGATTT  50

seq1  TGTACTCTTGATCCAAACCACCTTGGGATTTGTATCCATCAAGGCAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCTTGATCCAAACCACCTTGGGATTTGTATCCATCAAGGCAAGGC  100

seq1  TGCCACCTTGTGTCCTGGGGTCTCTGCAGAAGATGGGGAAGTGTTGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTTGTGTCCTGGGGTCTCTGCAGAAGATGGGGAAGTGTTGGTGA  150

seq1  GGGAACTGTGCACATATGGCTGGAAGTGCCTGCTTGAGTTCTGCCATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTGTGCACATATGGCTGGAAGTGCCTGCTTGAGTTCTGCCATCAG  200

seq1  GTTGTTTAGGGGGGATAGCATTCAGAAGTTCTTCTCTGGAACATTCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTAGGGGGGATAGCATTCAGAAGTTCTTCTCTGGAACATTCTCCA  250

seq1  ATAGATGGGTTTTAAGTTGGTGCACTTACCCCCACGGCTGCCCCCATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGGGTTTTAAGTTGGTGCACTTACCCCCACGGCTGCCCCCATCCA  300

seq1  ACTTTCTGTTGACCCTATCCAGGCAGAGTATGATCCATTTTTTTCCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGTTGACCCTATCCAGGCAGAGTATGATCCATTTTTTTCCATAA  350

seq1  ACCCACTGTTTAAAAGGAATTTGGCCCTGCATTTTTATTGGCAGGTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTGTTTAAAAGGAATTTGGCCCTGCATTTTTATTGGCAGGTAATA  400

seq1  CTCATTTTGATTTTTTTTTTTTTTTACTTACACATGTAATCAAAATGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTGATTTTTTTTTTTTTTTACTTACACATGTAATCAAAATGTGT  450

seq1  TACTATAAATTTCTACTGGTGAGACTCCTGCGTTCAGTACATTCTTACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAAATTTCTACTGGTGAGACTCCTGCGTTCAGTACATTCTTACGT  500

seq1  GAATCACAAGACTTTTCTCTTCATTCTGTTACAGCTCCACCGTTCGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACAAGACTTTTCTCTTCATTCTGTTACAGCTCCACCGTTCGTTTT  550

seq1  AGCTTTAACTTTTCCAGATTTAACTAATCCAGCCTCAACTTTTCTGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAACTTTTCCAGATTTAACTAATCCAGCCTCAACTTTTCTGAGTG  600

seq1  TTGGGTCTTTCCTGGGAACATCATGGAATAGCTGACCTGGAACATTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTTTCCTGGGAACATCATGGAATAGCTGACCTGGAACATTTTGA  650

seq1  TGATAAGGCATTCACTGGCTCTAAGGGAGAAGTGTGGGGTTTAAGATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGGCATTCACTGGCTCTAAGGGAGAAGTGTGGGGTTTAAGATGCT  700

seq1  AAGTAACAGTGGGTGGACGTGGTAAGAATTTAAATACTACAAAAGCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACAGTGGGTGGACGTGGTAAGAATTTAAATACTACAAAAGCCTGA  750

seq1  ACATGAAAAAAGGACTCTCTTCTACCTGATCCCTAAGTTTTCCCTGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAAAAAGGACTCTCTTCTACCTGATCCCTAAGTTTTCCCTGGAGA  800

seq1  TCAGAATATTTATCTTGGGCACCCAGCTACACATCTGCCCTCTTGGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATATTTATCTTGGGCACCCAGCTACACATCTGCCCTCTTGGGTTT  850

seq1  CCTTACATTATTTGCCAAGAACATATTGTTTCAGAATGGCCAGTAT-GGG  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTTACATTATTTGCCAAGAACATATTGTTTCAGAATGGCCAGTATGGGG  900

seq1  TCTACTTTGTTCTGAACCATCACAGGGCATTTCATTATCTTGGTTGTGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTGTTCTGAACCATCACAGGGCATTTCATTATCTTGGTTGTGCT  950

seq1  GTCATGAAACAATATACTTAACAATTGTAACACCTGTGAAGAAAGCTGTG  999
      |||||| ||| ||||||||||||||||| ||||||||| |||||||||||
seq2  GTCATG-AACCATATACTTAACAATTGT-ACACCTGTG-AGAAAGCTGTG  997

seq1  GTATGT-GTG-TGCCTTTCTCCATT-ACATTTATATAAA-GGATAAGTTC  1045
      |||||| ||| |||||||||||||| ||||||||||||| ||||||||| 
seq2  GTATGTGGTGTTGCCTTTCTCCATTAACATTTATATAAAGGGATAAGTT-  1046

seq1  CAGAAAGGCCTATCATTCTGCTC-TCAGCATCTTCCAGTTTCAACTC-AT  1093
      |||||    |||||||||||||| |||||||||| |||||   |||| ||
seq2  CAGAA---GCTATCATTCTGCTCTTCAGCATCTT-CAGTT--CACTCAAT  1090

seq1  TAACTGTAGGTATCTCAATCCTAACTTTTCACTATTAGTAAAAGGGATTT  1143
      || ||||  | |||||||| || || ||||||||||||||||||||||||
seq2  TACCTGTTAG-ATCTCAATTCT-ACCTTTCACTATTAGTAAAAGGGATTT  1138

seq1  A-GTGCC  1149
      | |||||
seq2  AGGTGCC  1145

seq1: chr11_3752925_3753857
seq2: B6Ng01-253K20.g_66_997 (reverse)

seq1  GGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGGTAAATACCTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  GGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGGTAAATAC--TATA  48

seq1  AAAAATGGAAAAAACAAACAAACAAAC-AAAAAAAAAAAAACCACTTCTC  99
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAAATGGAAAAAACAAACAAACAAACAAAAAAAAAAAAAACCACTTCTC  98

seq1  TGACGTTTGAGAGTCTCCAAGGTTCCGGGCATCCCAGAGGACCCTATATG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTTTGAGAGTCTCCAAGGTTCCGGGCATCCCAGAGGACCCTATATG  148

seq1  ATAAAGACACAGCTCCTGCTCTGGTGTGGGGAGGAAGCCCACACCTCGCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACACAGCTCCTGCTCTGGTGTGGGGAGGAAGCCCACACCTCGCT  198

seq1  AACAGTGTGCGTGGCCAAATGCCACTACACAGAATCATCCTGAACATGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTGCGTGGCCAAATGCCACTACACAGAATCATCCTGAACATGAC  248

seq1  TCCTCCAGAGCCTTGCTAAGGAACTGGGTAGATCCAACCCAGGAACACCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAGAGCCTTGCTAAGGAACTGGGTAGATCCAACCCAGGAACACCC  298

seq1  AGATGACCTTGGTATTGTTGCCAGGCCAAGATTTTGGCATCAAGTAATGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACCTTGGTATTGTTGCCAGGCCAAGATTTTGGCATCAAGTAATGA  348

seq1  GCACCCTCTATCCTAGGCAATGGCTGGTGTGAAGCCCGAGGAGAATAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTCTATCCTAGGCAATGGCTGGTGTGAAGCCCGAGGAGAATAAGA  398

seq1  AAAGACGTACCGCCGGGCGTGATGGGTGTGGTGGCGCACACCTTTAATCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACGTACCGCCGGGCGTGATGGGTGTGGTGGCGCACACCTTTAATCC  448

seq1  CAGCCCTCGGGAGGCAGAGGCAGGTGGATCTCTGAGTTTGAGGCCAGCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTCGGGAGGCAGAGGCAGGTGGATCTCTGAGTTTGAGGCCAGCCT  498

seq1  GGTCTACAAAGTGAGTTCCAGGACAGCTAGGGATATACACAGAAACCCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAAAGTGAGTTCCAGGACAGCTAGGGATATACACAGAAACCCTG  548

seq1  TCTCAAAAAACCAAAAAAAGAGAAAAGAAAAAAAAAAGAAAGAAAAGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAAACCAAAAAAAGAGAAAAGAAAAAAAAAAGAAAGAAAAGAAA  598

seq1  AGACATACCGTTATGGAGGGGAAAGGAGGCAGGCCACACCCAGGAAGAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACCGTTATGGAGGGGAAAGGAGGCAGGCCACACCCAGGAAGAGT  648

seq1  TGGAGGGGGACAGCTGGCAGGGACAGTGAATGCTGTGTGTACTCAGTGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGGGACAGCTGGCAGGGACAGTGAATGCTGTGTGTACTCAGTGAA  698

seq1  CTCAGGGAAGCCAAACCCCATATCAGAGCAGTGCCCACATCCATCAGAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGAAGCCAAACCCCATATCAGAGCAGTGCCCACATCCATCAGAGA  748

seq1  ACAACACAGTCTGGCAGGCAGTGTCCCCTGCCAGCTCTGCAAGGCCATCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACAGTCTGGCAGGCAGTGTCCCCTGCCAGCTCTGCAAGGCCATCT  798

seq1  GCTCCTATTTGGTTTCAGGCAGTGGGCCAAGAATGCTGTCAAACGGTAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTATTTGGTTTCAGGCAGTGGGCCAAGAATGCTGTCAAACGGTAGG  848

seq1  AGTCAAATCGGTGTGAAATATGCAGAGGTATGGCACAGGATGAGGATCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAATCGGTGTGAAATATGCAGAGGTATGGCACAGGATGAGGATCCA  898

seq1  GGAGGAGCAAAATATTGCTCAATGATCAGAATTC  933
      ||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCAAAATATTGCTCAATGATCAGAATTC  932