BAC Information

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BAC

Clone NameB6Ng01-254B23
Chromosome11 (Build37)
Map Location 13,695,946 - 13,932,350
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC627244
Downstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254B23.bB6Ng01-254B23.g
ACCGA060673GA060674
length1,0571,177
definitionB6Ng01-254B23.b B6Ng01-254B23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,695,946 - 13,696,651)(13,931,199 - 13,932,350)
sequence
gaattcacttcagtcattttataacgtctacaacaagccttaaataatta
gatgttaacatagtgtgaaccacactcaaatgaagttacacggttgcaga
caaatttagaaaagaccaacctatattctaaagataaagattaaatttaa
tttcttgatttatacatttttattggatattttctttatttacatttctt
ttttcttaatttactttttattagatattatatttatttacatttcaatt
ttccccttttcaggtcttccctttgggagccccccatcccatccccctcc
ccctgtctctatgagggtgttccaacagccactaacctaaccactcctaa
ctctccatcctggaattcccctataatagaaaatcatgctttgccaggac
aaagggcctctcctcctattgatgtccaaaaaggccatcctctgctacat
atgtggttgaagacatggattcctccatgtatactctttggttggtggtt
tagtccctgggagctcaggggttctggctggttgatattgttgttcttcc
tatgggattgcaaaccacttcggttccattagtcctttctctaactcctc
cattgcggaccctggagggtcagtccaatgtttggctgtgagcatcaacc
actgtattagtcaggctctggaagagcctctcagaagacagctatatcag
gctccagtcagcaagcacaccttggcatccacaatagtatctcagtttgg
tgtctgtatatgaaatggattcctaagtgtccttttcttaagtctctgat
ccaaatattgtctctgtattttattcattgagtattttgttttccctcta
agaaggactgaaatatccatactttggtctttcttcttcttgagcttcat
atgatctgtgaattttatctttggtattctgggcttttggaccaatatac
agttataagtgactgcaaccatttggggttcttttgtgattgagttacct
ttactcaggatggtactttgtaattccatccattttgcctaagatcctca
tgaattt

gaattctattgactatccacagatattcattcttgtttcagatgtcatga
cctatctttaaattcttcaacccttaatagtcattttttgcttacttcta
tcacctaacattcttgtgactctcaggtaaattcttttagtgtacactac
aaaacagaacactgcctttcactgatgaaaaagctaagaacgccataaga
tagtgtttgagaactagaacggagaattctctacttttttgtaaaatact
tatgtaatggttcatcaatttatttgcaaatagtttttttaattttctct
tgttagaaaatataaactttatgaaactggtttcacattagtaggggaaa
gatcagtgcttttccaagccatgctcagtcttacttgttaaaaaaaaaaa
aaaaagctaactataattcactttggataaaagacatgccttgaattgcc
accatagttaccaaattcactggcagaggaacaggacaccatttttattt
acaaaatccacacaattctttctaaatattgtgtttctttctatttttgt
ttggttataagagatgtggaccctgggtgccttttaaaaacatgatgtgg
taaaaatctgattgtctattcagacttatttctcaatggttattttgaac
catctactggagctgtaatgagagaactaacagtgttgctatgggcaact
caaagaaatcagttctattctatgtgaaagagattttccccttaaaaggt
ctgtcaaaatgacttacaatgtagacatgtccagaaagtagatacctgcc
agcagctttgttgccagtctcaggtttcagtccaaacagctctgcctgcc
agctcctcattgataattagattaacaactgcaaattagactactggata
tgaatatgaagagtttgcttcttagagcaggcaggtggtgggaaagtagg
aggactgcttcatttccatgttacaggaggataagtacaagaaaataagg
ctatgttcatttggctttaaggttggcatggattggtaagtagaaggagc
tggaagagaagaacctagggccctctaggcctggagattatattattacc
caggtggcttccaggaaggggaacttggtaggcaacgagaataatgcatc
actgaattctaagcctcttccaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_13695946_13696651
seq2: B6Ng01-254B23.b_47_752

seq1  GAATTCACTTCAGTCATTTTATAACGTCTACAACAAGCCTTAAATAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCAGTCATTTTATAACGTCTACAACAAGCCTTAAATAATTA  50

seq1  GATGTTAACATAGTGTGAACCACACTCAAATGAAGTTACACGGTTGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAACATAGTGTGAACCACACTCAAATGAAGTTACACGGTTGCAGA  100

seq1  CAAATTTAGAAAAGACCAACCTATATTCTAAAGATAAAGATTAAATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTAGAAAAGACCAACCTATATTCTAAAGATAAAGATTAAATTTAA  150

seq1  TTTCTTGATTTATACATTTTTATTGGATATTTTCTTTATTTACATTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGATTTATACATTTTTATTGGATATTTTCTTTATTTACATTTCTT  200

seq1  TTTTCTTAATTTACTTTTTATTAGATATTATATTTATTTACATTTCAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAATTTACTTTTTATTAGATATTATATTTATTTACATTTCAATT  250

seq1  TTCCCCTTTTCAGGTCTTCCCTTTGGGAGCCCCCCATCCCATCCCCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTTTCAGGTCTTCCCTTTGGGAGCCCCCCATCCCATCCCCCTCC  300

seq1  CCCTGTCTCTATGAGGGTGTTCCAACAGCCACTAACCTAACCACTCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCTATGAGGGTGTTCCAACAGCCACTAACCTAACCACTCCTAA  350

seq1  CTCTCCATCCTGGAATTCCCCTATAATAGAAAATCATGCTTTGCCAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATCCTGGAATTCCCCTATAATAGAAAATCATGCTTTGCCAGGAC  400

seq1  AAAGGGCCTCTCCTCCTATTGATGTCCAAAAAGGCCATCCTCTGCTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCCTCTCCTCCTATTGATGTCCAAAAAGGCCATCCTCTGCTACAT  450

seq1  ATGTGGTTGAAGACATGGATTCCTCCATGTATACTCTTTGGTTGGTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTGAAGACATGGATTCCTCCATGTATACTCTTTGGTTGGTGGTT  500

seq1  TAGTCCCTGGGAGCTCAGGGGTTCTGGCTGGTTGATATTGTTGTTCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCTGGGAGCTCAGGGGTTCTGGCTGGTTGATATTGTTGTTCTTCC  550

seq1  TATGGGATTGCAAACCACTTCGGTTCCATTAGTCCTTTCTCTAACTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGATTGCAAACCACTTCGGTTCCATTAGTCCTTTCTCTAACTCCTC  600

seq1  CATTGCGGACCCTGGAGGGTCAGTCCAATGTTTGGCTGTGAGCATCAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCGGACCCTGGAGGGTCAGTCCAATGTTTGGCTGTGAGCATCAACC  650

seq1  ACTGTATTAGTCAGGCTCTGGAAGAGCCTCTCAGAAGACAGCTATATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTAGTCAGGCTCTGGAAGAGCCTCTCAGAAGACAGCTATATCAG  700

seq1  GCTCCA  706
      ||||||
seq2  GCTCCA  706


seq1: chr11_13931199_13932350
seq2: B6Ng01-254B23.g_66_1242 (reverse)

seq1  TATTTT-GAAGAGCTTTAGAATACAAGTTGATGCATTTTAATTCT-GTTG  48
      |||||| ||||||  ||||||| ||   |||||||||   ||||| ||||
seq2  TATTTTGGAAGAGGCTTAGAATTCA--GTGATGCATT---ATTCTCGTTG  45

seq1  -CTACAAATGTCCCCTTCCTTGA--GCAC--TGGTAAT-ATAT-ATCT-C  90
       |||| ||  |||||||||| ||   |||   |||||| |||| |||| |
seq2  CCTACCAAGTTCCCCTTCCTGGAAGCCACCTGGGTAATAATATAATCTCC  95

seq1  AG--CTAGAGGG-CCTAG----TTCTCTCTCAGCT-CTTCTAACTAACAA  132
      ||  |||||||| |||||    ||||||  ||||| ||||||  || |||
seq2  AGGCCTAGAGGGCCCTAGGTTCTTCTCTTCCAGCTCCTTCTACTTACCAA  145

seq1  T-CATG-CAAACTTAA--GCAAATG-ACATAG-CTTA-TTTCTTGTACTT  175
      | |||| ||| |||||   |||||| |||||| |||| ||||||||||||
seq2  TCCATGCCAACCTTAAAGCCAAATGAACATAGCCTTATTTTCTTGTACTT  195

seq1  ATC--TCTGTAACATGGAAATGAAAGCAGTC--TCTACTTTCC--ACACC  219
      |||   |||||||||||||||| ||||||||   |||||||||   ||||
seq2  ATCCTCCTGTAACATGGAAATG-AAGCAGTCCTCCTACTTTCCCACCACC  244

seq1  TGCCTGCTCTAAGAAGCAAACTCTTCATATTCATATCCAGTAGTCTAATT  269
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTCTAAGAAGCAAACTCTTCATATTCATATCCAGTAGTCTAATT  294

seq1  TGCAGTTGTTAATCTAATTATCAATGAGGAGCTGGCAGGCAGAGCTGTTT  319
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTGTTAATCTAATTATCAATGAGGAGCTGGCAGGCAGAGCTGTTT  344

seq1  GGACTGAAACCTGAGACTGGCAACAAAGCTGCTGGCAGGTATCTACTTTC  369
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAAACCTGAGACTGGCAACAAAGCTGCTGGCAGGTATCTACTTTC  394

seq1  TGGACATGTCTACATTGTAAGTCATTTTGACAGACCTTTTAAGGGGAAAA  419
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATGTCTACATTGTAAGTCATTTTGACAGACCTTTTAAGGGGAAAA  444

seq1  TCTCTTTCACATAGAATAGAACTGATTTCTTTGAGTTGCCCATAGCAACA  469
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCACATAGAATAGAACTGATTTCTTTGAGTTGCCCATAGCAACA  494

seq1  CTGTTAGTTCTCTCATTACAGCTCCAGTAGATGGTTCAAAATAACCATTG  519
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGTTCTCTCATTACAGCTCCAGTAGATGGTTCAAAATAACCATTG  544

seq1  AGAAATAAGTCTGAATAGACAATCAGATTTTTACCACATCATGTTTTTAA  569
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAGTCTGAATAGACAATCAGATTTTTACCACATCATGTTTTTAA  594

seq1  AAGGCACCCAGGGTCCACATCTCTTATAACCAAACAAAAATAGAAAGAAA  619
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACCCAGGGTCCACATCTCTTATAACCAAACAAAAATAGAAAGAAA  644

seq1  CACAATATTTAGAAAGAATTGTGTGGATTTTGTAAATAAAAATGGTGTCC  669
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATATTTAGAAAGAATTGTGTGGATTTTGTAAATAAAAATGGTGTCC  694

seq1  TGTTCCTCTGCCAGTGAATTTGGTAACTATGGTGGCAATTCAAGGCATGT  719
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCTGCCAGTGAATTTGGTAACTATGGTGGCAATTCAAGGCATGT  744

seq1  CTTTTATCCAAAGTGAATTATAGTTAGCTTTTTTTTTTTTTTTTAACAAG  769
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCCAAAGTGAATTATAGTTAGCTTTTTTTTTTTTTTTTAACAAG  794

seq1  TAAGACTGAGCATGGCTTGGAAAAGCACTGATCTTTCCCCTACTAATGTG  819
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTGAGCATGGCTTGGAAAAGCACTGATCTTTCCCCTACTAATGTG  844

seq1  AAACCAGTTTCATAAAGTTTATATTTTCTAACAAGAGAAAATTAAAAAAA  869
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTTTCATAAAGTTTATATTTTCTAACAAGAGAAAATTAAAAAAA  894

seq1  CTATTTGCAAATAAATTGATGAACCATTACATAAGTATTTTACAAAAAAG  919
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGCAAATAAATTGATGAACCATTACATAAGTATTTTACAAAAAAG  944

seq1  TAGAGAATTCTCCGTTCTAGTTCTCAAACACTATCTTATGGCGTTCTTAG  969
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATTCTCCGTTCTAGTTCTCAAACACTATCTTATGGCGTTCTTAG  994

seq1  CTTTTTCATCAGTGAAAGGCAGTGTTCTGTTTTGTAGTGTACACTAAAAG  1019
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCATCAGTGAAAGGCAGTGTTCTGTTTTGTAGTGTACACTAAAAG  1044

seq1  AATTTACCTGAGAGTCACAAGAATGTTAGGTGATAGAAGTAAGCAAAAAA  1069
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCTGAGAGTCACAAGAATGTTAGGTGATAGAAGTAAGCAAAAAA  1094

seq1  TGACTATTAAGGGTTGAAGAATTTAAAGATAGGTCATGACATCTGAAACA  1119
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATTAAGGGTTGAAGAATTTAAAGATAGGTCATGACATCTGAAACA  1144

seq1  AGAATGAATATCTGTGGATAGTCAATAGAATTC  1152
      |||||||||||||||||||||||||||||||||
seq2  AGAATGAATATCTGTGGATAGTCAATAGAATTC  1177


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