BAC Information

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BAC

Clone NameB6Ng01-254L22
Chromosome11 (Build37)
Map Location 92,639,517 - 92,865,586
singlet/doubletdoublet
Overlap geneLOC382545
Upstream genenone
Downstream geneLOC100039286, Car10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254L22.bB6Ng01-254L22.g
ACCGA061133GA061134
length1,1191,146
definitionB6Ng01-254L22.b B6Ng01-254L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,639,517 - 92,640,630)(92,864,460 - 92,865,586)
sequence
gaattccctgtattagtctaaccaagcaactaaacagagagaacaaatgc
caaggttggaaaaagcaaagttttggtattcggaattgctacaatatcta
atgtgtatggttcaattgtttaaagtgaaacacatcaataaacagggtat
tgtgaataaaatgtttacactttataaaaaaaagaaaatatctaataaaa
agttttaaaaaataattttttttcaggtttctctcccctccctccccaaa
aagataaaggcagataaaacagaaaaaagcaaagggttataataaaggcc
actctggtgtgttccacaaatcaagagtgtcacattactggagaacatga
aggaaggcagaaattgagcctcatctcactagaatgcatttggcaacaca
tgtctctacgttgcctttgtacattaacattttagaagtttccctacaga
ttttttttttttttgagtattacagtgactactcccaattggccttcttg
ctattatctatcttcctagaagttttacattgataatatctgtaaagtca
agtcctaagcatatacattcaagtttgtctgaaatgttgcaaaaatggtt
gccttaattaaaaaaggtaggagaccatttaatgactagggaagttacca
aaaactgttagaataacaccaaaaggcagaaacgtgctgagcggacgtaa
ggctgggaaggctgttgtgctttggggatggaacattgtaacagcctatg
gccaagtccatatcagttctgctatcacagcagcaatcttagtatttgta
aacaaaattctaccctcctgttccaccttctagaactagtccttcccctg
gaagatgttaaagtataacttatgcaaggactatgagaaaatataactat
aatgcttctgcctattttaagattggcactaagattcaacagagggcatt
agcttctttaaggcaagtcagctacccagggacagagagttatcttgaga
acccaatgttaaatgacgatctcaccagagtcaggtgactggaaagagct
tgaaaataattcttctgagactagtgtttaattctgatccaatttccttt
accttatagaacaaggaaa
gaattcatataattaggcagtagagcttgagtcaggaaaagatagataat
agaaagtaagctgctttccttaaatatcactgtttctcctatcccacatt
ttcttttatatggttcagactctgtcttacatcatgtataattcaattgc
tataatttgttgcctgttttgcctccccagctataaacttaaaatgacct
acaacgctcagttcattctgggtcttgtcattttctgtgagaagtttctg
tatagtattagtagttactgaatcatgacaaacaggcttaaaataatctg
gaatgttgtgacttgttgtcaatatgtttcctccctgtgtggccaggcca
gaagaggtctagatggtgtgaatcttttgggagctagaactggggtatgg
aggacatatgaatcatttgatgaaaaactaaaccaaaccaaccaaccaac
caaacaattccaggcacatgcaaaaggaaactttagtgttgagttgaaga
gcctaaagcaaacagttctttaaaaatggttcatctcagaaaggcaaagc
cagagaagatgagaggtgggtaatcagtctatgggtttaatgtggtaggg
gctgccaccaaacggagcaaagaaaagcaagagataagatcctgacctcg
ataatcaactctttgcatttcagcacacccaaacccatgtgaagaactgg
atacagggtgaagagatggctcaataatgaagagcatgtgatggctaatc
tttgcttatcagcttgacacacctatgaagatagaacctcgatggaagaa
ttactcaatcaacatgattccatgggcattggatgtgggacatttttctg
attgttgcttgatgtaagagggccgctgcaaccatgggagccttggttga
ataagaaaggtagctggaagaagccagagtaaacaacctattggtgggca
gtcttccttcaaatgttctctgctccaagtcctagtttgggtttcccttg
agaggatggttttgttgccattgtaaagttgaaaaccaagtaaactcgtt
cttttccagaatggaattggaatcatgcttctcctcacatcacagatcta
cacaagagtacatacctgttttgaagagagatcggagtcctagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_92639517_92640630
seq2: B6Ng01-254L22.b_50_1168

seq1  GAATTCCCTGTATTAGTCTAACCAAGCAACTAAACAGAGAGAACAAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTATTAGTCTAACCAAGCAACTAAACAGAGAGAACAAATGC  50

seq1  CAAGGTTGGAAAAAGCAAAGTTTTGGTATTCGGAATTGCTACAATATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTGGAAAAAGCAAAGTTTTGGTATTCGGAATTGCTACAATATCTA  100

seq1  ATGTGTATGGTTCAATTGTTTAAAGTGAAACACATCAATAAACAGGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATGGTTCAATTGTTTAAAGTGAAACACATCAATAAACAGGGTAT  150

seq1  TGTGAATAAAATGTTTACACTTTATAAAAAAAAGAAAATATCTAATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATAAAATGTTTACACTTTATAAAAAAAAGAAAATATCTAATAAAA  200

seq1  AGTTTTAAAAAATAATTTTTTTTCAGGTTTCTCTCCCCTCCCTCCCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAAAAATAATTTTTTTTCAGGTTTCTCTCCCCTCCCTCCCCAAA  250

seq1  AAGATAAAGGCAGATAAAACAGAAAAAAGCAAAGGGTTATAATAAAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAGGCAGATAAAACAGAAAAAAGCAAAGGGTTATAATAAAGGCC  300

seq1  ACTCTGGTGTGTTCCACAAATCAAGAGTGTCACATTACTGGAGAACATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGTGTGTTCCACAAATCAAGAGTGTCACATTACTGGAGAACATGA  350

seq1  AGGAAGGCAGAAATTGAGCCTCATCTCACTAGAATGCATTTGGCAACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGCAGAAATTGAGCCTCATCTCACTAGAATGCATTTGGCAACACA  400

seq1  TGTCTCTACGTTGCCTTTGTACATTAACATTTTAGAAGTTTCCCTACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTACGTTGCCTTTGTACATTAACATTTTAGAAGTTTCCCTACAGA  450

seq1  TTTTTTTTTTTTTTGAGTATTACAGTGACTACTCCCAATTGGCCTTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTGAGTATTACAGTGACTACTCCCAATTGGCCTTCTTG  500

seq1  CTATTATCTATCTTCCTAGAAGTTTTACATTGATAATATCTGTAAAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATCTATCTTCCTAGAAGTTTTACATTGATAATATCTGTAAAGTCA  550

seq1  AGTCCTAAGCATATACATTCAAGTTTGTCTGAAATGTTGCAAAAATGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAAGCATATACATTCAAGTTTGTCTGAAATGTTGCAAAAATGGTT  600

seq1  GCCTTAATTAAAAAAGGTAGGAGACCATTTAATGACTAGGGAAGTTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAATTAAAAAAGGTAGGAGACCATTTAATGACTAGGGAAGTTACCA  650

seq1  AAAACTGTTAGAATAACACCAAAAGGCAGAAACGTGCTGAGCGGACGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTTAGAATAACACCAAAAGGCAGAAACGTGCTGAGCGGACGTAA  700

seq1  GGCTGGGAAGGCTGTTGTGCTTTGGGGATGGAACATTGTAACAGCCTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGAAGGCTGTTGTGCTTTGGGGATGGAACATTGTAACAGCCTATG  750

seq1  GCCAAGTCCATATCAGTTCTGCTATCACAGCAGCAATCTTAGTATTTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTCCATATCAGTTCTGCTATCACAGCAGCAATCTTAGTATTTGTA  800

seq1  AACAAAATTCTACCCTCCTGTTCCACCTTCTAGAACTAGTCCTT-CCCTG  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AACAAAATTCTACCCTCCTGTTCCACCTTCTAGAACTAGTCCTTCCCCTG  850

seq1  GAAGATGTTAAAGTATAACTTATGCAAGGACTATGAG-AAATATAACTAT  898
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAAGATGTTAAAGTATAACTTATGCAAGGACTATGAGAAAATATAACTAT  900

seq1  AATGCTTCTGCCTA-TTTAAGATTGGCACTAAGATTCAACAGAGGGCA-T  946
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  AATGCTTCTGCCTATTTTAAGATTGGCACTAAGATTCAACAGAGGGCATT  950

seq1  AGCT--CTTAAGGCAAGTCAGCTACCCAGGGACAGAGAGTTATC-TGAGA  993
      ||||   ||||||||||||||||||||||||||||||||||||| |||||
seq2  AGCTTCTTTAAGGCAAGTCAGCTACCCAGGGACAGAGAGTTATCTTGAGA  1000

seq1  ACCCAATGTTAAAATGAACGATCTCAACAAGAGTCAGGTGACTGGGAAAG  1043
      |||||||||| ||||| |||||||| || |||||||||||||| ||||||
seq2  ACCCAATGTT-AAATG-ACGATCTC-ACCAGAGTCAGGTGACT-GGAAAG  1046

seq1  AGCTTGAAAATAATTC-TCTGAGACTAGTGTTTAATTCTGATCCAA-TTC  1091
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  AGCTTGAAAATAATTCTTCTGAGACTAGTGTTTAATTCTGATCCAATTTC  1096

seq1  CTTTAACTATAAGAACAAAGAAA  1114
      ||||| ||   ||||||| ||||
seq2  CTTTACCTTATAGAACAAGGAAA  1119

seq1: chr11_92864460_92865586
seq2: B6Ng01-254L22.g_71_1216 (reverse)

seq1  GAACTA-GACTCAGATC-CTCTTCAAAACCAGTATGTACTCTGGTGTAGA  48
      |||||| ||||| |||| |||||||||||  ||||||||||| |||||||
seq2  GAACTAGGACTCCGATCTCTCTTCAAAACAGGTATGTACTCTTGTGTAGA  50

seq1  CTGGTGATGTGAAGAAGAGCATGAT--CAAATCCATCTTGGGAAAGAACG  96
         ||||||||| ||  ||||||||  ||| |||||  ||| ||||||||
seq2  TCTGTGATGTGAGGAGAAGCATGATTCCAATTCCATTCTGGAAAAGAACG  100

seq1  AGTTTACTTGGTTTTC-ACTTT--CATGGCA--CAAACCATCCTC---AA  138
      |||||||||||||||| |||||   ||||||   |||||||||||   | 
seq2  AGTTTACTTGGTTTTCAACTTTACAATGGCAACAAAACCATCCTCTCAAG  150

seq1  GGAAAACCAAACTAGGAACTTGAAGCAGA-AACATTAG-AGGAAGACTGC  186
      ||||| |||||||||| ||||| |||||| |||||| | |||||||||||
seq2  GGAAACCCAAACTAGG-ACTTGGAGCAGAGAACATTTGAAGGAAGACTGC  199

seq1  CCA-CACTGGGTTGTTTTCTCTGGCTTCTT-CAGCTACCTTTCTTATTCA  234
      ||| || | |||||||| |||||||||||| |||||||||||||||||||
seq2  CCACCAATAGGTTGTTTACTCTGGCTTCTTCCAGCTACCTTTCTTATTCA  249

seq1  ACC-AGGCTCCCATGGTTGCAGCGGCCCTCTTACATCAAGCAACAATCAG  283
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGCTCCCATGGTTGCAGCGGCCCTCTTACATCAAGCAACAATCAG  299

seq1  -AAAATGTCCCACATCC-ATGCCCATGG-ATCATGTTGATTGAGGTAATT  330
       |||||||||||||||| |||||||||| |||||||||||||| ||||||
seq2  AAAAATGTCCCACATCCAATGCCCATGGAATCATGTTGATTGA-GTAATT  348

seq1  CTTCCATCGAGGTTCTATCTTCATAGGTGTGTCAAGCTGATAAGC-AAGA  379
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTCCATCGAGGTTCTATCTTCATAGGTGTGTCAAGCTGATAAGCAAAGA  398

seq1  TTAGCCATCACATGCTCTTCATTATTGAGCCATCTCTTCACCCTGTATCC  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCATCACATGCTCTTCATTATTGAGCCATCTCTTCACCCTGTATCC  448

seq1  AGTTCTTCACATGGGTTTGGGTGTGCTGAAATGCAAAGAGTTGATTATCG  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCACATGGGTTTGGGTGTGCTGAAATGCAAAGAGTTGATTATCG  498

seq1  AGGTCAGGATCTTATCTCTTGCTTTTCTTTGCTCCGTTTGGTGGCAGCCC  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGATCTTATCTCTTGCTTTTCTTTGCTCCGTTTGGTGGCAGCCC  548

seq1  CTACCACATTAAACCCATAGACTGATTACCCACCTCTCATCTTCTCTGGC  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACATTAAACCCATAGACTGATTACCCACCTCTCATCTTCTCTGGC  598

seq1  TTTGCCTTTCTGAGATGAACCATTTTTAAAGAACTGTTTGCTTTAGGCTC  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTTCTGAGATGAACCATTTTTAAAGAACTGTTTGCTTTAGGCTC  648

seq1  TTCAACTCAACACTAAAGTTTCCTTTTGCATGTGCCTGGAATTGTTTGGT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTCAACACTAAAGTTTCCTTTTGCATGTGCCTGGAATTGTTTGGT  698

seq1  TGGTTGGTTGGTTTGGTTTAGTTTTTCATCAAATGATTCATATGTCCTCC  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTTGGTTTGGTTTAGTTTTTCATCAAATGATTCATATGTCCTCC  748

seq1  ATACCCCAGTTCTAGCTCCCAAAAGATTCACACCATCTAGACCTCTTCTG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCAGTTCTAGCTCCCAAAAGATTCACACCATCTAGACCTCTTCTG  798

seq1  GCCTGGCCACACAGGGAGGAAACATATTGACAACAAGTCACAACATTCCA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCCACACAGGGAGGAAACATATTGACAACAAGTCACAACATTCCA  848

seq1  GATTATTTTAAGCCTGTTTGTCATGATTCAGTAACTACTAATACTATACA  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTTAAGCCTGTTTGTCATGATTCAGTAACTACTAATACTATACA  898

seq1  GAAACTTCTCACAGAAAATGACAAGACCCAGAATGAACTGAGCGTTGTAG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCTCACAGAAAATGACAAGACCCAGAATGAACTGAGCGTTGTAG  948

seq1  GTCATTTTAAGTTTATAGCTGGGGAGGCAAAACAGGCAACAAATTATAGC  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTAAGTTTATAGCTGGGGAGGCAAAACAGGCAACAAATTATAGC  998

seq1  AATTGAATTATACATGATGTAAGACAGAGTCTGAACCATATAAAAGAAAA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATTATACATGATGTAAGACAGAGTCTGAACCATATAAAAGAAAA  1048

seq1  TGTGGGATAGGAGAAACAGTGATATTTAAGGAAAGCAGCTTACTTTCTAT  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGATAGGAGAAACAGTGATATTTAAGGAAAGCAGCTTACTTTCTAT  1098

seq1  TATCTATCTTTTCCTGACTCAAGCTCTACTGCCTAATTATATGAATTC  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTTTTCCTGACTCAAGCTCTACTGCCTAATTATATGAATTC  1146