BAC Information

Click to search

BAC

Clone NameB6Ng01-255M11
Chromosome11 (Build37)
Map Location 52,960,510 - 53,097,865
singlet/doubletdoublet
Overlap geneFstl4, LOC623205, Hspa4
Upstream geneOlfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
Downstream geneZcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255M11.bB6Ng01-255M11.g
ACCGA061904GA061905
length1,1541,061
definitionB6Ng01-255M11.b B6Ng01-255M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,960,510 - 52,961,666)(53,096,799 - 53,097,865)
sequence
gaattctgtgtgctgacgttaatggggtaccactctcaggtgatccctgg
gagtttgactttagacagccacctcacctagacaccttctaagcctccaa
aatgctgtgacatgggtaactagcaaccctgacaaagtggggaccatagg
aagggaccactggagcctaagattaccttcaaggactctaaaaagactgt
gacgaggagggtcaagaaaaactcaaatggagctgggcgtggtggcgcac
tcctttaatcccagcactcgggaggcagaggcaggcagatttctgagttc
gaggccagcctggtctacagagtgagtttcaggacagccaaggctacaca
gagaaaccctgtcttgaaaaaccaaaaaaaaaaaaaaagaaggaacaaaa
gaaagaaagaaagaaaaaaagaaagaaaggaaggaaggaaggaaggaagg
aaggaaggaaggaaggaaggaaggaaggaagaaaaactcaaataaccctg
cactagacccagcaagtggctctggctctgagccttagggtggagtctga
ctgcatctgaccatgtggagcattgagtttccctccccactgctccccct
aatgatgagctacacgtgccctaacacacacacacacacacacacacaca
cacacacacacacacagaaggggctgcaatacacttatattctgattcag
gaaacagacagaaatctgtcatctcagtattgatcagcctttagtttttt
catcagcaactcagggggtgagcccttagggctgttgtgacacaggataa
gtcagctatctgctgtgttctttatggccgaggcttctacggaacagtag
gaatggactcttttaagcaaagtgatgtttcacagtcagggtgcagcatt
ccagaagcctccaagatgagagcatggtgagccattttttttactaattt
ggaaagcagagccatgttcactatcaaccttcctgtcactatttgtgcct
ttctctcatccctcatgagttagttagccaaaagcatcttttttctcttt
ccctcctctccttgaaaattgagttcttaattccagactggcctgaatgt
gcaatgtagctgagaatgacttaactctctcctcaatacctctctgagac
ctgg

gaattcactttgtagaccaggctggcctcgaactcagaaattcgcctgcc
tctgcctcccgagtgctggtgtgcaccaccacacctggcaggaacaattt
cttaatctgatttctagatgtcaactttttgcaggcctttgtaaagagaa
tgtttcttttacaggttcctagtttctacactgatgcagaacggcggtca
gtgatggatgccacacagattgctggtctcaattgtttgcggttaatgaa
tgaaacaactgcaggtaagagggattaacgaggctaggtggcaaattcct
ttattcccagtattctcagcagaggcaagcggatctcttgagtccgaggc
catcctagtctatagaataagttccaggacgccagggatccattaaacag
agaaaccctgtttcaaaaacaaacaaaaagggggaatgaatgagacagct
gcagatgacttctactctcttaattgttaaatactgaagctgcttaacat
tgatcactgtgatggtaatgttccacatgagtaaaattatgcagtgttta
taaagaaattgattgtctccaacacagtgcccagtgtagctttagcttgt
tcctgagatatgaaatgtgtcctttttttttttaattgattaaatgaatc
gtagtatttagaagatactctgttgaacttacttttttccctcttgtgta
gttgctcttgcttatggaatctataaacaagaccttcctgccttagaaga
aaaaccaagaaatgtagtttttgtagatatgggacattctgcctatcaag
tttctgtatgtgcatttaataaaggaaaactgaaagtaagtatttttcta
gaaaactggaaattaaaatttgataaaatttgattagatttttgagtgac
aaattatatttttttcaccaattggaaacatgttgtgagtcacctgagct
ggaatgcagatatgtgggagagtagagttgtgggcctaacagctttatgt
agagtggtgtggtgtgcatgtcgagaaagagtatgaacttccagggagag
ctcccgagatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_52960510_52961666
seq2: B6Ng01-255M11.b_47_1200

seq1  GAATTCTGTGTGCTGACGTTAATGGGGTACCACTCTCAGGTGATCCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTGCTGACGTTAATGGGGTACCACTCTCAGGTGATCCCTGG  50

seq1  GAGTTTGACTTTAGACAGCCACCTCACCTAGACACCTTCTAAGCCTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGACTTTAGACAGCCACCTCACCTAGACACCTTCTAAGCCTCCAA  100

seq1  AATGCTGTGACATGGGTAACTAGCAACCCTGACAAAGTGGGGACCATAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGTGACATGGGTAACTAGCAACCCTGACAAAGTGGGGACCATAGG  150

seq1  AAGGGACCACTGGAGCCTAAGATTACCTTCAAGGACTCTAAAAAGACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACCACTGGAGCCTAAGATTACCTTCAAGGACTCTAAAAAGACTGT  200

seq1  GACGAGGAGGGTCAAGAAAAACTCAAATGGAGCTGGGCGTGGTGGCGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGGAGGGTCAAGAAAAACTCAAATGGAGCTGGGCGTGGTGGCGCAC  250

seq1  TCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTC  300

seq1  GAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAAGGCTACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAAGGCTACACA  350

seq1  GAGAAACCCTGTCTTGAAAAACCAAAAAAAAAAAAAAAGAAGGAACAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCTGTCTTGAAAAACCAAAAAAAAAAAAAAAGAAGGAACAAAA  400

seq1  GAAAGAAAGAAAGAAAAAAAGAAAGA----AAGGAAGGAAGGAAGGAAGG  446
      ||||||||||||||||||||||||||    ||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAAAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGG  450

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAAACTCAAATAACCCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAAACTCAAATAACCCTG  500

seq1  CACTAGACCCAGCAAGTGGCTCTGGCTCTGAGCCTTAGGGTGGAGTCTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGACCCAGCAAGTGGCTCTGGCTCTGAGCCTTAGGGTGGAGTCTGA  550

seq1  CTGCATCTGACCATGTGGAGCATTGAGTTTCCCTCCCCACTGCTCCCCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTGACCATGTGGAGCATTGAGTTTCCCTCCCCACTGCTCCCCCT  600

seq1  AATGATGAGCTACACGTGCCCTAACACACACACACACACACACACACACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGAGCTACACGTGCCCTAACACACACACACACACACACACACACA  650

seq1  CACACACACACACACAGAAGGGGCTGCAATACACTTATATTCTGATTCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACAGAAGGGGCTGCAATACACTTATATTCTGATTCAG  700

seq1  GAAACAGACAGAAATCTGTCATCTCAGTATTGATCAGCCTTTAGTTTTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGACAGAAATCTGTCATCTCAGTATTGATCAGCCTTTAGTTTTTT  750

seq1  CATCAGCAACTCA-GGGGTGAGCCCTTAGGGCTGTTGTGACACAGGATAA  795
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATCAGCAACTCAGGGGGTGAGCCCTTAGGGCTGTTGTGACACAGGATAA  800

seq1  GTCAGCTATCTGCTGTGTTCTTTATGGCCGAGGCTTCTACGGAACAGTAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTATCTGCTGTGTTCTTTATGGCCGAGGCTTCTACGGAACAGTAG  850

seq1  GAATGGACTCTTTTAAGCAAAGTGATGTTTCACAGTCAGGGTGCAGCATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGACTCTTTTAAGCAAAGTGATGTTTCACAGTCAGGGTGCAGCATT  900

seq1  CCAGAAGCCTCCAAGATGAGAGCATGGTGAGCCATTTTTTTTACTAATTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCCTCCAAGATGAGAGCATGGTGAGCCATTTTTTTTACTAATTT  950

seq1  GGAAAGCAGGAGCCATGTTCACTATCAACCTTCCTGTCACTATTTTGTGC  995
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  GGAAAGCA-GAGCCATGTTCACTATCAACCTTCCTGTCACTA-TTTGTGC  998

seq1  CTTTCTCTCATCCCTCATTGAGTTAAGTTAGCCCAAAAGCATCTTTTTTC  1045
      ||||||||||||||||| |||||| |||||| ||||||||||||||||||
seq2  CTTTCTCTCATCCCTCA-TGAGTT-AGTTAG-CCAAAAGCATCTTTTTTC  1045

seq1  TCTTTCTCT-CTCTCCTTTGAAATATGAGTTCTTATATCCCAGACTGGCC  1094
      |||||| || |||||| ||||||  |||||||||| || |||||||||||
seq2  TCTTTCCCTCCTCTCC-TTGAAAATTGAGTTCTTA-ATTCCAGACTGGCC  1093

seq1  TTGAATGTGCAATGTAGCTGAGGATGGCCTTAAACTC-CTCCTC-ATACC  1142
       ||||||||||||||||||||| ||| |  | ||||| |||||| |||||
seq2  -TGAATGTGCAATGTAGCTGAGAATGAC--TTAACTCTCTCCTCAATACC  1140

seq1  TCTCTGAGACTCTGG  1157
      |||||||||| ||||
seq2  TCTCTGAGAC-CTGG  1154


seq1: chr11_53096799_53097865
seq2: B6Ng01-255M11.g_70_1130 (reverse)

seq1  GATCTCGGGAGC-CTCACCTCGAAGTTCATACTCTTTCTCGAC-TTCACA  48
      |||||||||||| ||| ||| |||||||||||||||||||||| | ||||
seq2  GATCTCGGGAGCTCTC-CCTGGAAGTTCATACTCTTTCTCGACATGCACA  49

seq1  CCACACCAACTCTACATAAAGCTTGTTTGGGGCCCACACCTCTACTCCTC  98
      ||||||| |||||||||||||| ||||   |||||||| ||||||| |||
seq2  CCACACC-ACTCTACATAAAGC-TGTT--AGGCCCACAACTCTACT-CTC  94

seq1  CCACCATATCTGCATTCCAGCTCAGGTGACTCACAACATGTTTCCAATTG  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCA-CATATCTGCATTCCAGCTCAGGTGACTCACAACATGTTTCCAATTG  143

seq1  GTGAAAAAAATAATAATTTGTCACTCAAAAATCTAATCAAATTTTATCAA  198
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAAAAT-ATAATTTGTCACTCAAAAATCTAATCAAATTTTATCAA  192

seq1  ATTTTAATTTCCAGTTTTCTAGAAAAATACTTACTTTCAGTTTTCCTTTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTTCCAGTTTTCTAGAAAAATACTTACTTTCAGTTTTCCTTTA  242

seq1  TTAAATGCACATACAGAAACTTGATAGGCAGAATGTCCCATATCTACAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCACATACAGAAACTTGATAGGCAGAATGTCCCATATCTACAAA  292

seq1  AACTACATTTCTTGGTTTTTCTTCTAAGGCAGGAAGGTCTTGTTTATAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATTTCTTGGTTTTTCTTCTAAGGCAGGAAGGTCTTGTTTATAGA  342

seq1  TTCCATAAGCAAGAGCAACTACACAAGAGGGAAAAAAGTAAGTTCAACAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAAGCAAGAGCAACTACACAAGAGGGAAAAAAGTAAGTTCAACAG  392

seq1  AGTATCTTCTAAATACTACGATTCATTTAATCAATTAAAAAAAAAAAGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTTCTAAATACTACGATTCATTTAATCAATTAAAAAAAAAAAGGA  442

seq1  CACATTTCATATCTCAGGAACAAGCTAAAGCTACACTGGGCACTGTGTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCATATCTCAGGAACAAGCTAAAGCTACACTGGGCACTGTGTTG  492

seq1  GAGACAATCAATTTCTTTATAAACACTGCATAATTTTACTCATGTGGAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAATCAATTTCTTTATAAACACTGCATAATTTTACTCATGTGGAAC  542

seq1  ATTACCATCACAGTGATCAATGTTAAGCAGCTTCAGTATTTAACAATTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCATCACAGTGATCAATGTTAAGCAGCTTCAGTATTTAACAATTAA  592

seq1  GAGAGTAGAAGTCATCTGCAGCTGTCTCATTCATTCCCCCTTTTTGTTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAGAAGTCATCTGCAGCTGTCTCATTCATTCCCCCTTTTTGTTTG  642

seq1  TTTTTGAAACAGGGTTTCTCTGTTTAATGGATCCCTGGCGTCCTGGAACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAACAGGGTTTCTCTGTTTAATGGATCCCTGGCGTCCTGGAACT  692

seq1  TATTCTATAGACTAGGATGGCCTCGGACTCAAGAGATCCGCTTGCCTCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATAGACTAGGATGGCCTCGGACTCAAGAGATCCGCTTGCCTCTG  742

seq1  CTGAGAATACTGGGAATAAAGGAATTTGCCACCTAGCCTCGTTAATCCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATACTGGGAATAAAGGAATTTGCCACCTAGCCTCGTTAATCCCT  792

seq1  CTTACCTGCAGTTGTTTCATTCATTAACCGCAAACAATTGAGACCAGCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTGCAGTTGTTTCATTCATTAACCGCAAACAATTGAGACCAGCAA  842

seq1  TCTGTGTGGCATCCATCACTGACCGCCGTTCTGCATCAGTGTAGAAACTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGGCATCCATCACTGACCGCCGTTCTGCATCAGTGTAGAAACTA  892

seq1  GGAACCTGTAAAAGAAACATTCTCTTTACAAAGGCCTGCAAAAAGTTGAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTGTAAAAGAAACATTCTCTTTACAAAGGCCTGCAAAAAGTTGAC  942

seq1  ATCTAGAAATCAGATTAAGAAATTGTTCCTGCCAGGTGTGGTGGTGCACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAAATCAGATTAAGAAATTGTTCCTGCCAGGTGTGGTGGTGCACA  992

seq1  CCAGCACTCGGGAGGCAGAGGCAGGCGAATTTCTGAGTTCGAGGCCAGCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCGGGAGGCAGAGGCAGGCGAATTTCTGAGTTCGAGGCCAGCC  1042

seq1  TGGTCTACAAAGTGAATTC  1067
      |||||||||||||||||||
seq2  TGGTCTACAAAGTGAATTC  1061


| Home | SequenceCutter | Blast | Download |