BAC Information

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BAC

Clone NameB6Ng01-257L10
Chromosome11 (Build37)
Map Location 3,895,701 - 4,066,457
singlet/doubletdoublet
Overlap geneGal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1
Downstream geneTbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257L10.bB6Ng01-257L10.g
ACCGA063341GA063342
length9901,002
definitionB6Ng01-257L10.b B6Ng01-257L10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,895,701 - 3,896,682)(4,065,458 - 4,066,457)
sequence
gaattctctcagcccacagtcatgggtgccttaggtcactttcccaggga
ggctaccaggaagtggtgctccacatgcacttggtgacgtgccacgcatg
accacagggcggtgtggatgaccttctgtagcctcgggggcttggaagca
tcagctaggggagaaatggaaagtttcagccttttctgtacacctatggg
gaagtagaaatgttcccttaccccagcagctcagacctcaaccattaccg
ttgacagctctgtctcctatggataaggctactgcgtccacatcacattg
gcaccccaaacaaataacaaaaactcaccaagacaccctgtgaaagtgag
ttagtagttttgtttgtttgtttttaagacagtgtttctctgtgtaaccc
tggtggtcctagaacttgctctgtagaccaggctggccctcaaactcaca
gagacctgcctgcctctgcctccaaaggactagaactaaaggcgtgtgcc
accactgcccagctgactcaacagttttggttttttgttgttgttgtttt
ggttttttgttttggttttttgttttattgtttttcaagacagggtttct
ctgtgtagccctggctgtcctggaactcactctgtagaccaggctgacct
cgaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaagg
catgcaccaccacacccggctaatatgtacattttatgtggtatttggaa
cataactatacaactaaatgtatttgttcatttgtttatttgtttgtttg
tttaagttccagcaggaaaggtggttacagggggatagggaaggctgggc
cccgcccttctgaaatagaaaagattgtaacccttccgtatgaacccgag
gccctatggctgagacgggattttcccctttgtttcccaaaatgcattct
ccataaaacccaaaaacatctggcaaagacggcagtcatc
gaattcacttgggaggcagaggcagcaggatttctgagttcaaggccagc
ctggtctacagagtgagttccaggacggccagggctacacagagaaaccc
tgtctcgaaaagccaaaaaaaaaaaaaaaaagaattctacaacctctgtg
accactcagacccaaatctccttctatttcaccatctgtgccaccaccca
ctcaccaagcagtccatgcctaaggataggagagctgccctggagcactg
aggaagctgtttgttttttgagcatcaaggaatcagtcggtgccaccaga
cagtgtgggcctggctgcttccaccacagccgttccttagctcccctgcc
acttctgatacccacaatcagctgagcaactgcttagttcttgtaataaa
acacttattctttggctaagaatgcagcataactgtagagtacgtatcta
aggtcgaaaaggccctggattgggtaccaagctccataaaaacaaaaagg
ataaaaaccttgaacagctagtaagtattaatgtctttgcccaagtactg
cctaaagtaacttcatttatgactgggaggttcacgaaggaaaaactgct
ctgcaagatttctatcttctgtatatatcctggataaggctacagtgtgg
tggctgagtgcgtaaaggtccttgctgacatgatggacactctgagtttc
tggttccagtttggtaaaaagggtgggcgaacttgactctcatcaagtta
tactctgtctgatccatgtgtatgtgtgtgtccatgtcatgcacacatta
cgggtgtatacccacactaaagaaatgccgtactccaggataatgaaaat
gtttggagaatcctgataattagggcttcattggattttactcaagaacc
atagtttttctcttattgtgagatacagtctcccaagtccaggctaggac
tggccctgccaggacttgcctaccttactcctaggtgcaagttaattgtg
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3895701_3896682
seq2: B6Ng01-257L10.b_48_1037

seq1  GAATTCTCTCAGCCCACAGTCATGGGTGCCTTAGGTCACTTTCCCAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGCCCACAGTCATGGGTGCCTTAGGTCACTTTCCCAGGGA  50

seq1  GGCTACCAGGAAGTGGTGCTCCACATGCACTTGGTGACGTGCCACGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCAGGAAGTGGTGCTCCACATGCACTTGGTGACGTGCCACGCATG  100

seq1  ACCACAGGGCGGTGTGGATGACCTTCTGTAGCCTCGGGGGCTTGGAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGGGCGGTGTGGATGACCTTCTGTAGCCTCGGGGGCTTGGAAGCA  150

seq1  TCAGCTAGGGGAGAAATGGAAAGTTTCAGCCTTTTCTGTACACCTATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAGGGGAGAAATGGAAAGTTTCAGCCTTTTCTGTACACCTATGGG  200

seq1  GAAGTAGAAATGTTCCCTTACCCCAGCAGCTCAGACCTCAACCATTACCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAAATGTTCCCTTACCCCAGCAGCTCAGACCTCAACCATTACCG  250

seq1  TTGACAGCTCTGTCTCCTATGGATAAGGCTACTGCGTCCACATCACATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGCTCTGTCTCCTATGGATAAGGCTACTGCGTCCACATCACATTG  300

seq1  GCACCCCAAACAAATAACAAAAACTCACCAAGACACCCTGTGAAAGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCAAACAAATAACAAAAACTCACCAAGACACCCTGTGAAAGTGAG  350

seq1  TTAGTAGTTTTGTTTGTTTGTTTTTAAGACAGTGTTTCTCTGTGTAACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGTTTTGTTTGTTTGTTTTTAAGACAGTGTTTCTCTGTGTAACCC  400

seq1  TGGTGGTCCTAGAACTTGCTCTGTAGACCAGGCTGGCCCTCAAACTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTCCTAGAACTTGCTCTGTAGACCAGGCTGGCCCTCAAACTCACA  450

seq1  GAGACCTGCCTGCCTCTGCCTCCAAAGGACTAGAACTAAAGGCGTGTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTGCCTGCCTCTGCCTCCAAAGGACTAGAACTAAAGGCGTGTGCC  500

seq1  ACCACTGCCCAGCTGACTCAACAGTTTTGGTTTTTTGTTGTTGTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCCCAGCTGACTCAACAGTTTTGGTTTTTTGTTGTTGTTGTTTT  550

seq1  GGTTTTTTGTTTTGGTTTTTTGTTTTATTGTTTTTCAAGACAGGGTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTGTTTTGGTTTTTTGTTTTATTGTTTTTCAAGACAGGGTTTCT  600

seq1  CTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGACCT  650

seq1  CGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGG  700

seq1  CATGCACCACCACACCCGGCTAATATGTACATTTTATGTGGTATTTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACCACCACACCCGGCTAATATGTACATTTTATGTGGTATTTGGAA  750

seq1  CATAACTATACAACTAAATGTATTTGTTCATTTGTTTATTTGTTTGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTATACAACTAAATGTATTTGTTCATTTGTTTATTTGTTTGTTTG  800

seq1  TTTAAGTTCCAGCAGGAAAGGTGG-TACAGGGGGATAGGGAAGGCT-GGC  848
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  TTTAAGTTCCAGCAGGAAAGGTGGTTACAGGGGGATAGGGAAGGCTGGGC  850

seq1  CCCGCCC-TCTGAAATAGAAAAGATTGT-AGCCTTCCGTATGAA-CCGAG  895
      ||||||| |||||||||||||||||||| | ||||||||||||| |||||
seq2  CCCGCCCTTCTGAAATAGAAAAGATTGTAACCCTTCCGTATGAACCCGAG  900

seq1  G-CCTAGGGCTGAGACGGGATTTTCTCCTTTGTTTCCCAAAATGCATTCA  944
      | |||| |||||||||||||||||| ||||||||||||||||||||||| 
seq2  GCCCTATGGCTGAGACGGGATTTTCCCCTTTGTTTCCCAAAATGCATTCT  950

seq1  TCATAAAACCC-AAAACATCT-GCAAAGACGGCAGTCATC  982
       |||||||||| ||||||||| ||||||||||||||||||
seq2  CCATAAAACCCAAAAACATCTGGCAAAGACGGCAGTCATC  990

seq1: chr11_4065458_4066457
seq2: B6Ng01-257L10.g_71_1071 (reverse)

seq1  GCACACTTAAC-TGCACCTAGAAGTAAAGGTAGGCAAGTCCTGGCAGGGC  49
      ||||| ||||| ||||||||| ||| ||||||||||||||||||||||||
seq2  GCACAATTAACTTGCACCTAGGAGT-AAGGTAGGCAAGTCCTGGCAGGGC  49

seq1  CAGTCCTTAGCCTGGACTTGGGAGACTGTATCTCAACAAATAAGAGAAAA  99
      |||||| ||||||||||||||||||||||||||||   ||||||||  ||
seq2  CAGTCC-TAGCCTGGACTTGGGAGACTGTATCTCA--CAATAAGAG--AA  94

seq1  AAACTATGGTTCTTGAGTTATATCCACTGAGACCCTAAATATCAGGATTC  149
      |||||||||||||||||| | ||||| |||  |||||| |||||||||||
seq2  AAACTATGGTTCTTGAGTAAAATCCAATGAAGCCCTAATTATCAGGATTC  144

seq1  TCCAAACATTTTCATTATCCTGGAGTACGGCATTTCTTTAGTGTGGGTAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACATTTTCATTATCCTGGAGTACGGCATTTCTTTAGTGTGGGTAT  194

seq1  ACACCCGT-ATGTGTGCATGACATGGACACACACATACACATGGATCAGA  248
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCGTAATGTGTGCATGACATGGACACACACATACACATGGATCAGA  244

seq1  CAGAGTATAACTTGATGAGAGTC-AGTTCGCCCACCC-TTTTACC-AACT  295
      ||||||||||||||||||||||| ||||||||||||| ||||||| ||||
seq2  CAGAGTATAACTTGATGAGAGTCAAGTTCGCCCACCCTTTTTACCAAACT  294

seq1  GGAACCAG-AACTCAGAGTGTCCATCATGTCAGCAAGGACCTTTACGCAC  344
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAGAAACTCAGAGTGTCCATCATGTCAGCAAGGACCTTTACGCAC  344

seq1  TCAGCCACCACACTGTAGCCTTATCCAGGATATATACAGAAGATAGAAAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCACCACACTGTAGCCTTATCCAGGATATATACAGAAGATAGAAAT  394

seq1  CTTGCAGAGCAGTTTTTCCTTCGTGAACCTCCCAGTCATAAATGAAGTTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGAGCAGTTTTTCCTTCGTGAACCTCCCAGTCATAAATGAAGTTA  444

seq1  CTTTAGGCAGTACTTGGGC-AAGACATTAATACTTACTAGCTGTTCAAGG  493
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTTAGGCAGTACTTGGGCAAAGACATTAATACTTACTAGCTGTTCAAGG  494

seq1  TTTTTATCCTTTTTGTTTTTATGGAGCTTGGTACCCAATCCAGGGCCTTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCCTTTTTGTTTTTATGGAGCTTGGTACCCAATCCAGGGCCTTT  544

seq1  TCGACCTTAGATACGTACTCTACAGTTATGCTGCATTCTTAGCCAAAGAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACCTTAGATACGTACTCTACAGTTATGCTGCATTCTTAGCCAAAGAA  594

seq1  TAAGTGTTTTATTACAAGAACTAAGCAGTTGCTCAGCTGATTGTGGGTAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTTTTATTACAAGAACTAAGCAGTTGCTCAGCTGATTGTGGGTAT  644

seq1  CAGAAGTGGCAGGGGAGCTAAGGAACGGCTGTGGTGGAAGCAGCCAGGCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGGCAGGGGAGCTAAGGAACGGCTGTGGTGGAAGCAGCCAGGCC  694

seq1  CACACTGTCTGGTGGCACCGACTGATTCCTTGATGCTCAAAAAACAAACA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTCTGGTGGCACCGACTGATTCCTTGATGCTCAAAAAACAAACA  744

seq1  GCTTCCTCAGTGCTCCAGGGCAGCTCTCCTATCCTTAGGCATGGACTGCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCAGTGCTCCAGGGCAGCTCTCCTATCCTTAGGCATGGACTGCT  794

seq1  TGGTGAGTGGGTGGTGGCACAGATGGTGAAATAGAAGGAGATTTGGGTCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGTGGGTGGTGGCACAGATGGTGAAATAGAAGGAGATTTGGGTCT  844

seq1  GAGTGGTCACAGAGGTTGTAGAATTCTTTTTTTTTTTTTTTTTGGCTTTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTCACAGAGGTTGTAGAATTCTTTTTTTTTTTTTTTTTGGCTTTT  894

seq1  CGAGACAGGGTTTCTCTGTGTAGCCCTGGCCGTCCTGGAACTCACTCTGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGGTTTCTCTGTGTAGCCCTGGCCGTCCTGGAACTCACTCTGT  944

seq1  AGACCAGGCTGGCCTTGAACTCAGAAATCCTGCTGCCTCTGCCTCCCAAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTTGAACTCAGAAATCCTGCTGCCTCTGCCTCCCAAG  994

seq1  TGAATTC  1000
      |||||||
seq2  TGAATTC  1001