BAC Information

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BAC

Clone NameB6Ng01-257M02
Chromosome11 (Build37)
Map Location 115,910,180 - 116,087,366
singlet/doubletdoublet
Overlap geneUnk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl
Upstream geneCd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b
Downstream geneSrp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257M02.bB6Ng01-257M02.g
ACCGA063371GA063372
length1,170984
definitionB6Ng01-257M02.b B6Ng01-257M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,086,195 - 116,087,366)(115,910,180 - 115,911,164)
sequence
gaattcactctgtagaccaggctgacctcaaactcatacagatctgtctg
tctgtctttctttctttctttctttctttcttcctcctcctcttcctcct
cttcctcttcttcctcctcctcctccccctcctcttccttttagattcta
agtaaattacaatgcatacccagggttcagaatgattggataagcagtag
tttccagaggctggtccctggaagcttgagtggtgccccagggcttcagg
gtctcactggacagttgaatccagcagatctgtggcctaatgacaccaga
gctacaatgtaagagccactgggacaagacagaactctagggccatcaga
caagaatgtcagagaagggaggcatccctgagtccctgttgcttatgtgt
gctggctgattgtggtgctggggacaccggctggtgggaaaagagctttc
cccagcccctgtgactcttgcttcctccttggcagagactgatacaagaa
atcctggggcgcgagcaggaccaggccaccgtgtcccgcctcacccggga
cctgcaggaggccctccaggtgagcacttgtacttcagcttctccctgtt
ttcccaccagcctcccctccctcttccagcccctggtcccccaggtccag
tctctgcaagtggctttccctcctgttcaggactatgagctgcaagcaga
tacctaccgctgctccttagagcccgccttggcagtgtccgccccgaaga
gactcagagtgatttccttgcaggagagcatccaggctcaggtgaggctg
gtcctggcagggttgagcatctcctggcaccagccctgcagcccctcagg
ccggagctgactctgctgtccctctccccactttgttcccaggagaagaa
cctttgcgaaggcttacactgaggttgccgcagctgagcagcagcagctg
cgccagctggagtttgctaaaaagatgctcaagaggtaaaagatggcgcc
accctgggacgacagcagacagcccggtccggggtggtgcccaccctggg
gacgacagtggacagctgggtccggggtggaccgaatgtcactttcctcc
cctgcagctaagcctctgggacaaggctgggcatgaatttctctaggagg
tccatgcaagactgtgccta
gaattcatccttctctccctcagtctaccaccactgcaccctctggatca
cggtgacagccctcagcagctggcctccggaggcggcagagttgactgac
ttgggatgctgtgttccaggtgcccattcctgcacagaaccactggggac
actgagcgcaggtatcaccttcgttactataaaactggaatctgcatcca
tgagacagactcaaaaggcaactgcaccaaaaatggcctgcactgcgctt
ttgcccacgggcctcatgacctccgctcccctgtttacgacatcaggtag
gctgatgccaggctgggggaggggacaaggggcttagcttctgtagctgc
tggccccagcgaggcaagagaactgaggcactgtgctctttcccagtctc
ttgtgctcctccccacactgtctgtccttgcctcttctcttctcccaggg
agctccaggccatggaggccttgcagaatggccagactacagtagagggc
agcatagaaggccagtcagctggggctgcaagccatgccatgatagaaaa
aatcctcagtgaggaaccccggtggcaaggtacaggcaacttcaagtggc
cttggtactcccgtcgtcataactgctcggagctttggcttgaaactgcc
tgccttttccaactgaaactgccctgtctggcccactagaaatctagccc
ttctcatctcatttagacatttatggcatatgtatgagtgttttgtctga
atgtatttctgtgtaccatgtgtacctaggaatggttttgagtcaccatg
tggtgctgtgaactgaacccaggtcctctgcaagaacagcaggtgctttt
aaccaaagagctatcgcttcagtcccactttaccccttcatttcatgtta
aacctgtcattcaaaaggcacttgtaaggagtttccagatggactgcatt
cctgggattcccctgggcacgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116086195_116087366
seq2: B6Ng01-257M02.b_47_1216 (reverse)

seq1  TAGGCACAG-CCTGCAT-GAACTTCTAGAGAAATCTCCATGCCCAGGCCT  48
      ||||||||| | ||||| || || |||||||||  | ||||||||| | |
seq2  TAGGCACAGTCTTGCATGGACCTCCTAGAGAAA--TTCATGCCCAGCCTT  48

seq1  GT-CCAGAGGCTAAGGCTGCAGGGGAGAAAGGTGACATCCGGGTCCACCC  97
      || ||||||||| | |||||||||||| || ||||||| | |||||||||
seq2  GTCCCAGAGGCTTA-GCTGCAGGGGAGGAAAGTGACATTC-GGTCCACCC  96

seq1  CGGACCAGGCTGTCCACTGTCGT-CCCAGGGTGGGCACCACCCCGGACCG  146
      ||||||  ||||||||||||||| ||||||||||||||||||||||||||
seq2  CGGACCCAGCTGTCCACTGTCGTCCCCAGGGTGGGCACCACCCCGGACCG  146

seq1  GGCTGTCTGCTGTCGTCCCAGGGTGGGCGCCATCTTTTTACCTTCCTGAG  196
      |||||||||||||||||||||||| ||||||||| ||||||| || ||||
seq2  GGCTGTCTGCTGTCGTCCCAGGGT-GGCGCCATC-TTTTACC-TCTTGAG  193

seq1  CATCTTTTTAGCAAACTCCAGCTGGCGCAGCTGCTGCTGCTCAGCTGCGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTTAGCAAACTCCAGCTGGCGCAGCTGCTGCTGCTCAGCTGCGG  243

seq1  CAACCTCAGTGTAAGCCTTCGC-AAGGTTCTTCTCCTGGGAACAAAGTGG  295
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAACCTCAGTGTAAGCCTTCGCAAAGGTTCTTCTCCTGGGAACAAAGTGG  293

seq1  GGAGAGGGACAGCAGAGTCAGCTCCGGCCTGAGGGGCTGCAGGGCTGGTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGACAGCAGAGTCAGCTCCGGCCTGAGGGGCTGCAGGGCTGGTG  343

seq1  CCAGGAGATGCTCAACCCTGCCAGGACCAGCCTCACCTGAGCCTGGATGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGATGCTCAACCCTGCCAGGACCAGCCTCACCTGAGCCTGGATGC  393

seq1  TCTCCTGCAAGGAAATCACTCTGAGTCTCTTCGGGGCGGACACTGCCAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCAAGGAAATCACTCTGAGTCTCTTCGGGGCGGACACTGCCAAG  443

seq1  GCGGGCTCTAAGGAGCAGCGGTAGGTATCTGCTTGCAGCTCATAGTCCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCTCTAAGGAGCAGCGGTAGGTATCTGCTTGCAGCTCATAGTCCTG  493

seq1  AACAGGAGGGAAAGCCACTTGCAGAGACTGGACCTGGGGGACCAGGGGCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGGGAAAGCCACTTGCAGAGACTGGACCTGGGGGACCAGGGGCT  543

seq1  GGAAGAGGGAGGGGAGGCTGGTGGGAAAACAGGGAGAAGCTGAAGTACAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGGAGGGGAGGCTGGTGGGAAAACAGGGAGAAGCTGAAGTACAA  593

seq1  GTGCTCACCTGGAGGGCCTCCTGCAGGTCCCGGGTGAGGCGGGACACGGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCACCTGGAGGGCCTCCTGCAGGTCCCGGGTGAGGCGGGACACGGT  643

seq1  GGCCTGGTCCTGCTCGCGCCCCAGGATTTCTTGTATCAGTCTCTGCCAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGTCCTGCTCGCGCCCCAGGATTTCTTGTATCAGTCTCTGCCAAG  693

seq1  GAGGAAGCAAGAGTCACAGGGGCTGGGGAAAGCTCTTTTCCCACCAGCCG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGCAAGAGTCACAGGGGCTGGGGAAAGCTCTTTTCCCACCAGCCG  743

seq1  GTGTCCCCAGCACCACAATCAGCCAGCACACATAAGCAACAGGGACTCAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCCAGCACCACAATCAGCCAGCACACATAAGCAACAGGGACTCAG  793

seq1  GGATGCCTCCCTTCTCTGACATTCTTGTCTGATGGCCCTAGAGTTCTGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCTCCCTTCTCTGACATTCTTGTCTGATGGCCCTAGAGTTCTGTC  843

seq1  TTGTCCCAGTGGCTCTTACATTGTAGCTCTGGTGTCATTAGGCCACAGAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCAGTGGCTCTTACATTGTAGCTCTGGTGTCATTAGGCCACAGAT  893

seq1  CTGCTGGATTCAACTGTCCAGTGAGACCCTGAAGCCCTGGGGCACCACTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGATTCAACTGTCCAGTGAGACCCTGAAGCCCTGGGGCACCACTC  943

seq1  AAGCTTCCAGGGACCAGCCTCTGGAAACTACTGCTTATCCAATCATTCTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCCAGGGACCAGCCTCTGGAAACTACTGCTTATCCAATCATTCTG  993

seq1  AACCCTGGGTATGCATTGTAATTTACTTAGAATCTAAAAGGAAGAGGAGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGGGTATGCATTGTAATTTACTTAGAATCTAAAAGGAAGAGGAGG  1043

seq1  GGGAGGAGGAGGAGGAAGAAGAGGAAGAGGAGGAAGAGGAGGAGGAAGAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGGAGGAGGAAGAAGAGGAAGAGGAGGAAGAGGAGGAGGAAGAA  1093

seq1  AGAAAGAAAGAAAGAAAGAAAGACAGACAGACAGATCTGTATGAGTTTGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGACAGACAGACAGATCTGTATGAGTTTGA  1143

seq1  GGTCAGCCTGGTCTACAGAGTGAATTC  1172
      |||||||||||||||||||||||||||
seq2  GGTCAGCCTGGTCTACAGAGTGAATTC  1170

seq1: chr11_115910180_115911164
seq2: B6Ng01-257M02.g_67_1050

seq1  GAATTCATCCTTCTCTCCCTCAGTCTACCACCACTGCACCCTCTGGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTTCTCTCCCTCAGTCTACCACCACTGCACCCTCTGGATCA  50

seq1  CGGTGACAGCCCTCAGCAGCTGGCCTCCGGAGGCGGCAGAGTTGACTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGACAGCCCTCAGCAGCTGGCCTCCGGAGGCGGCAGAGTTGACTGAC  100

seq1  TTGGGATGCTGTGTTCCAGGTGCCCATTCCTGCACAGAACCACTGGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATGCTGTGTTCCAGGTGCCCATTCCTGCACAGAACCACTGGGGAC  150

seq1  ACTGAGCGCAGGTATCACCTTCGTTACTATAAAACTGGAATCTGCATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCGCAGGTATCACCTTCGTTACTATAAAACTGGAATCTGCATCCA  200

seq1  TGAGACAGACTCAAAAGGCAACTGCACCAAAAATGGCCTGCACTGCGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGACTCAAAAGGCAACTGCACCAAAAATGGCCTGCACTGCGCTT  250

seq1  TTGCCCACGGGCCTCATGACCTCCGCTCCCCTGTTTACGACATCAGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCACGGGCCTCATGACCTCCGCTCCCCTGTTTACGACATCAGGTAG  300

seq1  GCTGATGCCAGGCTGGGGGAGGGGACAAGGGGCTTAGCTTCTGTAGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGCCAGGCTGGGGGAGGGGACAAGGGGCTTAGCTTCTGTAGCTGC  350

seq1  TGGCCCCAGCGAGGCAAGAGAACTGAGGCACTGTGCTCTTTCCCAGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCAGCGAGGCAAGAGAACTGAGGCACTGTGCTCTTTCCCAGTCTC  400

seq1  TTGTGCTCCTCCCCACACTGTCTGTCCTTGCCTCTTCTCTTCTCCCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTCCTCCCCACACTGTCTGTCCTTGCCTCTTCTCTTCTCCCAGGG  450

seq1  AGCTCCAGGCCATGGAGGCCTTGCAGAATGGCCAGACTACAGTAGAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGGCCATGGAGGCCTTGCAGAATGGCCAGACTACAGTAGAGGGC  500

seq1  AGCATAGAAGGCCAGTCAGCTGGGGCTGCAAGCCATGCCATGATAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGAAGGCCAGTCAGCTGGGGCTGCAAGCCATGCCATGATAGAAAA  550

seq1  AATCCTCAGTGAGGAACCCCGGTGGCAAGGTACAGGCAACTTCAAGTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCAGTGAGGAACCCCGGTGGCAAGGTACAGGCAACTTCAAGTGGC  600

seq1  CTTGGTACTCCCGTCGTCATAACTGCTCGGAGCTTTGGCTTGAAACTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTACTCCCGTCGTCATAACTGCTCGGAGCTTTGGCTTGAAACTGCC  650

seq1  TGCCTTTTCCAACTGAAACTGCCCTGTCTGGCCCACTAGAAATCTAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTCCAACTGAAACTGCCCTGTCTGGCCCACTAGAAATCTAGCCC  700

seq1  TTCTCATCTCATTTAGACATTTATGGCATATGTATGAGTGTTTTGTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATCTCATTTAGACATTTATGGCATATGTATGAGTGTTTTGTCTGA  750

seq1  ATGTATTTCTGTGTACCATGTGTACCTAGGAATGGTTTTGAGTCACCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTCTGTGTACCATGTGTACCTAGGAATGGTTTTGAGTCACCATG  800

seq1  TGGTGCTGTGAACTGAACCCAGGTCCTCTGCAAGAACAGCAGGTGCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGTGAACTGAACCCAGGTCCTCTGCAAGAACAGCAGGTGCTTTT  850

seq1  AACCAAAGAGCTATCGCTTCAGTCCCACTTTACCCCTTCATTTCATGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGAGCTATCGCTTCAGTCCCACTTTACCCCTTCATTTCATGTTA  900

seq1  AACCTGTCATTCAAAAGGCACTTGTAAGGGAGTTTCCAGATGGACTGCAT  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AACCTGTCATTCAAAAGGCACTTGTAA-GGAGTTTCCAGATGGACTGCAT  949

seq1  TCCTGGGATTCCCCTGGGCACGTGTGTGTGTGTGT  985
      |||||||||||||||||||||||||||||||||||
seq2  TCCTGGGATTCCCCTGGGCACGTGTGTGTGTGTGT  984