BAC Information

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BAC

Clone NameB6Ng01-257N21
Chromosome11 (Build37)
Map Location 100,443,760 - 100,444,924
singlet/doubletsinglet
Overlap geneDnajc7
Upstream geneOTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1
Downstream geneNkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257N21.bB6Ng01-257N21.g
ACCGA063454GA063455
length1,1561,089
definitionB6Ng01-257N21.b B6Ng01-257N21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactctgtagaccaggctagccttgaactcagaaatccacctgcc
tctgcctcccaagtgctgggattaaaaacatgcaccaccactggcaggca
ggagcagaattttgtcctcttgtccatatccctcaagctccagtgccctg
ctataggagccggacagtgtggtgacttataccttaatcccagcactgga
gagggctgaggcaggaggactgctctagcctgagcctacatagtgagaaa
acacacacacacacacacacacacacacacacacacacacacacacactc
atacaacacctggtgcctatgctcttggaagaacctcaggtacagagcag
ctgccaaagccaaggaccaaagaacggtcaaaacattttattctttttct
tttttaataaagttaaacaatacaacaaaaattcacaagctgcctgcttc
cctgtctacccctggcttccctccctccctagtcctcagcactggccccc
tttccttcacccctcatacagacacagggcacccgactgagaaaacgaaa
ctgctctaagtacacagggacatgatggaggaagtgaactgtccacactc
atggttaaaccaagcaagtctgcattttctgggttttaagtagttggcct
tcattagccaaactgaaagtagaaattccctgggccagatgctgaaagga
aaaagaaaggcttgttagttggctctgtggttttcttaggaaaaccactg
ttgttataccaaagtcttaaagagcagcttaatccaaacagagactccaa
gggtatcaggcagtctaagcctagagcacaagggccagcatgcagggtga
gcgccctaccactgggctgaagcgcactttgtgtgtagcttctcaacacc
cctgctcttatggagaaggcatgacactacgggcttggggatgcttctct
gactttgctaactgcactgagatggtcccaagaaaataaactcagagcct
catcagccacacgagcatagacacctgtcctgctgacaggatccagctgt
ctccactcagattcccagtgctgctgagtgaggggcagtgcttgtctgtc
acctgggagcttcctaagagcgagcagcaagcaatctaccttccaagctg
aagccc
gaattcaatacaagggtgcatgccttgcattttcaaggctccagttctat
tctcaccaaaagaaaacaaaaagcaccagtgagggcagccccctcatcag
catcctgctgctgtggccttgaaattccctgctctagtcttagctgccgt
gttgggtgtgctctctcacatgcagcccctcttctccctgttccctctca
ggttagttaactcatcttcaagatctcatcttgtctcagcgtgagcccct
gccccaccctgccttttttttttcctttaagtgaacttttcagaagagta
gtaaagaaattctgagggtagtacagttcctcacaagccctagaccctgt
tcccctgttagtagcatgttacattagtgttgatgtgtgaaagtctgtgc
tccactcacatttctgtggatgacacccacctgattgtcctgtctccgct
gctgtcacctctcctcagactactctcagcttcacagactacactcgttt
tcagttaccttgatggtcttgaggtcaccagccagatactttgtgtgatg
ctagacatttttctcgttgagtagactggggttgggagtgatacgggtta
gtggagagatgtaaaaataccatttgcatcctattgtatgaagggccaca
caatcagtgtgatctaccactgtcactggcagcctgaccacatttgttct
ctttggaagaatgtcatgtgtagcccacactgaagagtgactggtcagga
ccctctcttggagggtggagtggtcacgtgaattattaagactctcgctc
gattcaagagatctgcttattctctctcatttatttattcattatttcat
ccgtcgatattggctctcaagtacctaattttacactttagtgtgtaatc
tgtggcttttctcacattgcttcatctttgaccaataggctgctctttca
gctccctttggaccaactatcaatgtgaaagttctggattctgattttga
gcatccttacttttggcacagatgcctctgtgcattcgaccaagcctgaa
tcaactacccttccaagacctggttgacaataattctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_100443760_100444924
seq2: B6Ng01-257N21.b_45_1200

seq1  GAATTCACTCTGTAGACCAGGCTAGCCTTGAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTAGCCTTGAACTCAGAAATCCACCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAAACATGCACCACCACTGGCAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAAACATGCACCACCACTGGCAGGCA  100

seq1  GGAGCAGAATTTTGTCCTCTTGTCCATATCCCTCAAGCTCCAGTGCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAATTTTGTCCTCTTGTCCATATCCCTCAAGCTCCAGTGCCCTG  150

seq1  CTATAGGAGCCGGACAGTGTGGTGACTTATACCTTAATCCCAGCACTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGAGCCGGACAGTGTGGTGACTTATACCTTAATCCCAGCACTGGA  200

seq1  GAGGGCTGAGGCAGGAGGACTGCTCTAGCCTGAGCCTACATAGTGAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTGAGGCAGGAGGACTGCTCTAGCCTGAGCCTACATAGTGAGAAA  250

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACACACACTC  300

seq1  ATACAACACCTGGTGCCTATGCTCTTGGAAGAACCTCAGGTACAGAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACACCTGGTGCCTATGCTCTTGGAAGAACCTCAGGTACAGAGCAG  350

seq1  CTGCCAAAGCCAAGGACCAAAGAACGGTCAAAACATTTTATTCTTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAAGCCAAGGACCAAAGAACGGTCAAAACATTTTATTCTTTTTCT  400

seq1  TTTTTAATAAAGTTAAACAATACAACAAAAATTCACAAGCTGCCTGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATAAAGTTAAACAATACAACAAAAATTCACAAGCTGCCTGCTTC  450

seq1  CCTGTCTACCCCTGGCTTCCCTCCCTCCCTAGTCCTCAGCACTGGCCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTACCCCTGGCTTCCCTCCCTCCCTAGTCCTCAGCACTGGCCCCC  500

seq1  TTTCCTTCACCCCTCATACAGACACAGGGCACCCGACTGAGAAAACGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCACCCCTCATACAGACACAGGGCACCCGACTGAGAAAACGAAA  550

seq1  CTGCTCTAAGTACACAGGGACATGATGGAGGAAGTGAACTGTCCACACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTAAGTACACAGGGACATGATGGAGGAAGTGAACTGTCCACACTC  600

seq1  ATGGTTAAACCAAGCAAGTCTGCATTTTCTGGGTTTTAAGTAGTTGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAAACCAAGCAAGTCTGCATTTTCTGGGTTTTAAGTAGTTGGCCT  650

seq1  TCATTAGCCAAACTGAAAGTAGAAATTCCCTGGGCCAGATGCTGAAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGCCAAACTGAAAGTAGAAATTCCCTGGGCCAGATGCTGAAAGGA  700

seq1  AAAAGAAAGGCTTGTTAGTTGGCTCTGTGGTTTTCTTAGGAAAACCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGGCTTGTTAGTTGGCTCTGTGGTTTTCTTAGGAAAACCACTG  750

seq1  TTGTTATACCAAAGTCTTAAAGAGCAGCTTAATCCAAACAGAGACTCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATACCAAAGTCTTAAAGAGCAGCTTAATCCAAACAGAGACTCCAA  800

seq1  GGGTATCAGGCAGTCTAAGCCTAGAGCACAAGGGCCAGCATGCAGGGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATCAGGCAGTCTAAGCCTAGAGCACAAGGGCCAGCATGCAGGGTGA  850

seq1  GCGCCCTACCACTGGGCTGAAGCGCACTTTGTGTGTAGCTTCTCAACACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCTACCACTGGGCTGAAGCGCACTTTGTGTGTAGCTTCTCAACACC  900

seq1  CCTGCTCTTATGGAGAAGGCATGACACTACGGGGCTTGGGGATGCTTCTC  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTGCTCTTATGGAGAAGGCATGACACTAC-GGGCTTGGGGATGCTTCTC  949

seq1  TGACTTTGCTAACTGCACTGAGAATGGTCCCAAGAAAAATAAACCCAGGA  1000
      |||||||||||||||||||||| ||||||||||| ||||||||| || ||
seq2  TGACTTTGCTAACTGCACTGAG-ATGGTCCCAAG-AAAATAAACTCA-GA  996

seq1  GCCTCATCAGCCACACGAGCATAGACACCTGTCCTGCTGAACAAGGATCC  1050
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  GCCTCATCAGCCACACGAGCATAGACACCTGTCCTGCTGA--CAGGATCC  1044

seq1  AGCTGTCTCCACTCAGATTCCCCAGGTGCTGCTGAGTGAGGGGCCAGTGC  1100
      ||||||||||||||||||||||   |||||||||||||||||| ||||||
seq2  AGCTGTCTCCACTCAGATTCCC--AGTGCTGCTGAGTGAGGGG-CAGTGC  1091

seq1  TGGTCTGTCACCTGGGAGC-TCCTAAGAGCGAGCAGCAGGCAAACCTACC  1149
      | ||||||||||||||||| |||||||||||||||||| || || |||||
seq2  TTGTCTGTCACCTGGGAGCTTCCTAAGAGCGAGCAGCAAGC-AATCTACC  1140

seq1  TTCAAAGCTGAAGCCC  1165
      ||| ||||||||||||
seq2  TTCCAAGCTGAAGCCC  1156