BAC Information

Click to search

BAC

Clone NameB6Ng01-258C12
Chromosome11 (Build37)
Map Location 71,108,221 - 71,109,406
singlet/doubletsinglet
Overlap genenone
Upstream geneAlox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c
Downstream geneLOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258C12.g
ACCGA063667
length1,192
definitionB6Ng01-258C12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttaacctacaagacaattgttcctgttttgggctcacaactcct
ctaccataggactcctctaccataggactttagactcctctaaagtctat
aaatgtaaggactgcgggttgctgaataaccaccatattccagctttccc
cgctatgaatggctaattgttatcaaatacccatttatctgaaatgtata
tctgtaaatatctatagtaaaacagtactccatccagacttcttttcctt
tcatatataacaaatttcaattttatgtgactggagagaaaaatgagtaa
gatattaggtttgtctgtgaggtattccaaataccattagtatgtgagtt
aacaatctgattgggaaagtcacactttgaatgtgggtagcaccatccaa
ttgtgttgggacccagacaaaagaggaggacacctgtcagcttatctcag
aataaaagctagaaccttggccattctaggaaacctcttgcaaacttagt
atccaaacatgtaagccaatctattaaatttcattttattgttaaaatgt
atatttggttggttatgcctctaggggtcactgatatagagctttgatac
aaaattaatatctaagaacaaggggagaaggagatacacagaacttccaa
aacagcactctttgcttttgcaatttgttaatagatacagaatattgtat
aagtataaaatgatatactttctgcacaagtcataattttccttgatttg
cattaaaagaactctaacaaatactctttttaagagtctactatgtgaac
acacacacacaaatgatttatcattaaaacatatacaaaccataaagaaa
caagaatttaaatatctttatcatcataaacaggtgggctaataaatatc
catggaggaaagatcaaaaaagagatcacagagaatcagattcccatggt
tataaatgatgtcccctcctccatgtgcctggggagaggggaggatacag
gtgcagcagccttttccaggtaagcaagtacttggtaaatacgactttct
taccacagcccaggccaattacagaataaacctgggcttccatgatggtt
ttggataaatccataaagaatgcctgtataatggaatccaatttattagc
atactgagatgcctacccttagtccttggtttttactttctg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71108221_71109406
seq2: B6Ng01-258C12.g_65_1256 (reverse)

seq1  CAGAAAGTAAAAAACAAGGAATTAAGAGTTAAGCAAATCTAGTATGCATA  50
      ||||||||||||| ||||| | |||| | || |||  || ||||||| ||
seq2  CAGAAAGTAAAAACCAAGG-ACTAAG-GGTAGGCATCTC-AGTATGC-TA  46

seq1  ATAAATTTGAAT-CAATATACAAGCATTCTTTAAGAATTTACCAAAAACA  99
      ||||||| || | || |||||| |||||||||| | ||||| | ||||| 
seq2  ATAAATTGGATTCCATTATACAGGCATTCTTTATGGATTTATCCAAAACC  96

seq1  TTCAATGAAACCCA-GTTTA-TCTGTAATTTGCCTTGGGCTGT-GTAAGA  146
       |||  ||| |||| ||||| ||||||||| ||| |||||||| ||||||
seq2  ATCATGGAAGCCCAGGTTTATTCTGTAATTGGCC-TGGGCTGTGGTAAGA  145

seq1  AAGTCGTATTTA-CAAGTACTTGCTTTACTTGAAAA-GCTGCTGCACCTG  194
      |||||||||||| |||||||||||||  || ||||| |||||||||||||
seq2  AAGTCGTATTTACCAAGTACTTGCTTACCTGGAAAAGGCTGCTGCACCTG  195

seq1  TATCCT-CCCTCT-CCCAGGCACATGGAG--AGAGACATCATTTATAACC  240
      |||||| |||||| |||||||||||||||   | ||||||||||||||||
seq2  TATCCTCCCCTCTCCCCAGGCACATGGAGGAGGGGACATCATTTATAACC  245

seq1  ATGGGAATCTGATTCTCTGTGATCTCTTTTTTGATCTTTCCTCCATGGAT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAATCTGATTCTCTGTGATCTCTTTTTTGATCTTTCCTCCATGGAT  295

seq1  ATTTATTAG-CCACCTGTTTATGATGATAAAGATATTTAAATTCTTGTTT  339
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAGCCCACCTGTTTATGATGATAAAGATATTTAAATTCTTGTTT  345

seq1  CTTTATGGTTTGTATATGTTTTAATGATAAATCATTTGTGTGTGTGTGTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGGTTTGTATATGTTTTAATGATAAATCATTTGTGTGTGTGTGTT  395

seq1  CACATAGTAGACTCTTAAAAAGAGTATTTGTTAGAGTTCTTTTAATGCAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGTAGACTCTTAAAAAGAGTATTTGTTAGAGTTCTTTTAATGCAA  445

seq1  ATCAAGGAAAATTATGACTTGTGCAGAAAGTATATCATTTTATACTTATA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGAAAATTATGACTTGTGCAGAAAGTATATCATTTTATACTTATA  495

seq1  CAATATTCTGTATCTATTAACAAATTGCAAAAGCAAAGAGTGCTGTTTTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTCTGTATCTATTAACAAATTGCAAAAGCAAAGAGTGCTGTTTTG  545

seq1  GAAGTTCTGTGTATCTCCTTCTCCCCTTGTTCTTAGATATTAATTTTGTA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTGTGTATCTCCTTCTCCCCTTGTTCTTAGATATTAATTTTGTA  595

seq1  TCAAAGCTCTATATCAGTGACCCCTAGAGGCATAACCAACCAAATATACA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTCTATATCAGTGACCCCTAGAGGCATAACCAACCAAATATACA  645

seq1  TTTTAACAATAAAATGAAATTTAATAGATTGGCTTACATGTTTGGATACT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACAATAAAATGAAATTTAATAGATTGGCTTACATGTTTGGATACT  695

seq1  AAGTTTGCAAGAGGTTTCCTAGAATGGCCAAGGTTCTAGCTTTTATTCTG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCAAGAGGTTTCCTAGAATGGCCAAGGTTCTAGCTTTTATTCTG  745

seq1  AGATAAGCTGACAGGTGTCCTCCTCTTTTGTCTGGGTCCCAACACAATTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGCTGACAGGTGTCCTCCTCTTTTGTCTGGGTCCCAACACAATTG  795

seq1  GATGGTGCTACCCACATTCAAAGTGTGACTTTCCCAATCAGATTGTTAAC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGCTACCCACATTCAAAGTGTGACTTTCCCAATCAGATTGTTAAC  845

seq1  TCACATACTAATGGTATTTGGAATACCTCACAGACAAACCTAATATCTTA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACTAATGGTATTTGGAATACCTCACAGACAAACCTAATATCTTA  895

seq1  CTCATTTTTCTCTCCAGTCACATAAAATTGAAATTTGTTATATATGAAAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTTCTCTCCAGTCACATAAAATTGAAATTTGTTATATATGAAAG  945

seq1  GAAAAGAAGTCTGGATGGAGTACTGTTTTACTATAGATATTTACAGATAT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAGTCTGGATGGAGTACTGTTTTACTATAGATATTTACAGATAT  995

seq1  ACATTTCAGATAAATGGGTATTTGATAACAATTAGCCATTCATAGCGGGG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCAGATAAATGGGTATTTGATAACAATTAGCCATTCATAGCGGGG  1045

seq1  AAAGCTGGAATATGGTGGTTATTCAGCAACCCGCAGTCCTTACATTTATA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGAATATGGTGGTTATTCAGCAACCCGCAGTCCTTACATTTATA  1095

seq1  GACTTTAGAGGAGTCTAAAGTCCTATGGTAGAGGAGTCCTATGGTAGAGG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAGAGGAGTCTAAAGTCCTATGGTAGAGGAGTCCTATGGTAGAGG  1145

seq1  AGTTGTGAGCCCAAAACAGGAACAATTGTCTTGTAGGTTAAGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGAGCCCAAAACAGGAACAATTGTCTTGTAGGTTAAGAATTC  1192