BAC Information

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BAC

Clone NameB6Ng01-258G16
Chromosome11 (Build37)
Map Location 37,352,139 - 37,353,344
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz2
Downstream geneLOC100039148, LOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258G16.bB6Ng01-258G16.g
ACCGA063860GA063861
length1,1461,220
definitionB6Ng01-258G16.b B6Ng01-258G16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactctagctaccagtcttgtttttataaggaaaagatggtgttt
ttagtcggatattacaaggtcttagtgaaacatttgctcagcttattaat
ctcccaaccttcagtaagtcctcaaaggatactagagttttcaaacttaa
gcccactgatacataactgctataagaaaactgctttccatctatgagaa
tagtgtttgtttgtgggttttttttacctgctttgaactttatatattgt
tgttattttttaaacttatcatttctattttataatatctgattaattaa
gctaacagtatactgacaccaagactccagttctggaacagcccaatata
tagcagaagaagtatctcaaatacttgaataaaataaagtgaatcatagg
tagacagagaagaacaggaggtgtccacatactttagacatcatggagaa
aatgagcaaggttagcaaggcaaaaacaattattagatgaaagtaaacag
aatcccgggggctgacactaacccaaatggtaaatatagtcataaaaaca
tagaaattaattaaacaaataagacaaggatcccagaaatatctcatata
ttcacagccaattaattgccaacaaagacactacaaccatacaatggaga
aggaacagccatttccagatgtgatgttgagtaaactaggaaagcacaag
tttaagactaaacagctaaaaaagattgaaaaatatattctattgattcc
aattctattataggaaacatgaaaaagtatactacatgcccaagtatcta
tgaataattacatgttctgaggaagtatattcttatggacaattctcagt
gaagaattattcaggtataatttttattgcttatttaaagatagtgtgaa
acctgtcctccaacaatacccagcatgaagtctacagttatgaataactt
accatattgaaatatgggcagaaccaatcagtaaacatattaagattata
tttatgtaatgttgattaccaatttaggctagaaaaataaaaaccatatt
ctgaataccacctcgtagagggtcagtggagcattatcaaaaaaaaaaac
cataagccgaaaacaaaaaaccaatcaaaacaccaggttaacctag

gaattccccatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtggaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccactttggtttgatttcacccctgagtttgatt
tatttccctgcccgtctactcctcttgggtgaattttgctttcccttttt
tttctagggctttttagatgtgttgtccaagcttgcctagtatgtgctgt
cttcccgtttcttctttggaggccacctcagcgctattgagttttccctt
cttagaaatgctttcattgtgtcccataggtttggtacgtgtggcttcat
tttcattaaactctaaaagtctttaattcctttctttatttctcttgacc
agggtatcatggagaagagtgttattcagtttcccacggtgaatgatggc
cttcattcctaatgttgttattgtgaagatcagctctatgcgcaggtggt
ctctgtgataaggtaaacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_37352139_37353344
seq2: B6Ng01-258G16.b_49_1194

seq1  GAATTCACTCTAGCTACCAGTCTTGTTTTTATAAGGAAAAGATGGTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTAGCTACCAGTCTTGTTTTTATAAGGAAAAGATGGTGTTT  50

seq1  TTAGTCGGATATTACAAGGTCTTAGTGAAACATTTGCTCAGCTTATTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCGGATATTACAAGGTCTTAGTGAAACATTTGCTCAGCTTATTAAT  100

seq1  CTCCCAACCTTCAGTAAGTCCTCAAAGGATACTAGAGTTTTCAAACTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAACCTTCAGTAAGTCCTCAAAGGATACTAGAGTTTTCAAACTTAA  150

seq1  GCCCACTGATACATAACTGCTATAAGAAAACTGCTTTCCATCTATGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTGATACATAACTGCTATAAGAAAACTGCTTTCCATCTATGAGAA  200

seq1  TAGTGTTTGTTTGTGGGTTTTTTTTACCTGCTTTGAACTTTATATATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTTGTTTGTGGGTTTTTTTTACCTGCTTTGAACTTTATATATTGT  250

seq1  TGTTATTTTTTAAACTTATCATTTCTATTTTATAATATCTGATTAATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTTTAAACTTATCATTTCTATTTTATAATATCTGATTAATTAA  300

seq1  GCTAACAGTATACTGACACCAAGACTCCAGTTCTGGAACAGCCCAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAGTATACTGACACCAAGACTCCAGTTCTGGAACAGCCCAATATA  350

seq1  TAGCAGAAGAAGTATCTCAAATACTTGAATAAAATAAAGTGAATCATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAAGAAGTATCTCAAATACTTGAATAAAATAAAGTGAATCATAGG  400

seq1  TAGACAGAGAAGAACAGGAGGTGTCCACATACTTTAGACATCATGGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGAGAAGAACAGGAGGTGTCCACATACTTTAGACATCATGGAGAA  450

seq1  AATGAGCAAGGTTAGCAAGGCAAAAACAATTATTAGATGAAAGTAAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCAAGGTTAGCAAGGCAAAAACAATTATTAGATGAAAGTAAACAG  500

seq1  AATCCCGGGGGCTGACACTAACCCAAATGGTAAATATAGTCATAAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCGGGGGCTGACACTAACCCAAATGGTAAATATAGTCATAAAAACA  550

seq1  TAGAAATTAATTAAACAAATAAGACAAGGATCCCAGAAATATCTCATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTAATTAAACAAATAAGACAAGGATCCCAGAAATATCTCATATA  600

seq1  TTCACAGCCAATTAATTGCCAACAAAGACACTACAACCATACAATGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGCCAATTAATTGCCAACAAAGACACTACAACCATACAATGGAGA  650

seq1  AGGAACAGCCATTTCCAGATGTGATGTTGAGTAAACTAGGAAAGCACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGCCATTTCCAGATGTGATGTTGAGTAAACTAGGAAAGCACAAG  700

seq1  TTTAAGACTAAACAGCTAAAAAAGATTGAAAAATATATTCTATTGATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGACTAAACAGCTAAAAAAGATTGAAAAATATATTCTATTGATTCC  750

seq1  AATTCTATTATAGGAAACATGAAAAAGTATACTACATGCCCAAGTATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATTATAGGAAACATGAAAAAGTATACTACATGCCCAAGTATCTA  800

seq1  TGAATAATTACATGTTCTGAGGAAGTATATTCTTATGGACAATTCTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATTACATGTTCTGAGGAAGTATATTCTTATGGACAATTCTCAGT  850

seq1  GAAGAATTATTCAGGTATAATTTTTATTGCTTATTTAAAGATAGTGTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATTATTCAGGTATAATTTTTATTGCTTATTTAAAGATAGTGTGAA  900

seq1  ACCTGT-CTCCAACAATA-CCAGCATGAAGTCTACAGTTATGAATAACTT  948
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  ACCTGTCCTCCAACAATACCCAGCATGAAGTCTACAGTTATGAATAACTT  950

seq1  ACAATATTGAAATATGGGCAGAACCAATCAGTAAACATATTAAGATTATA  998
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTGAAATATGGGCAGAACCAATCAGTAAACATATTAAGATTATA  1000

seq1  TTTATGTAATGTTGATTAACAATTTAAGCTAGAAAAATAAAAACCATA-T  1047
      |||||||||||||||||| ||||||| ||||||||||||||||||||| |
seq2  TTTATGTAATGTTGATTACCAATTTAGGCTAGAAAAATAAAAACCATATT  1050

seq1  CTGAATAC--ACTCGTTAGAGGGTCAGT-GAGCAATAATTAAAAAAAAAA  1094
      ||||||||   |||| |||||||||||| ||||| ||  | |||||||||
seq2  CTGAATACCACCTCG-TAGAGGGTCAGTGGAGCATTA--TCAAAAAAAAA  1097

seq1  AAACATAAAAGCAGAAAACAAAAAAACCAAATACAAAACAACCAGTGTAA  1144
      || |||  |||| |||||| ||||||||||   |||||| |||||  |||
seq2  AACCAT--AAGCCGAAAAC-AAAAAACCAA--TCAAAAC-ACCAGGTTAA  1141

seq1  -CTAGTCTTTTACTGCCTTATGGGTTGTTTTTAAAATCCCTCCTCTGTTG  1193
       ||||                                             
seq2  CCTAG---------------------------------------------  1146

seq1  GCCCTTAACCTAG  1206
                   
seq2  -------------  1146


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