BAC Information

Click to search

BAC

Clone NameB6Ng01-258G18
Chromosome11 (Build37)
Map Location 38,979,878 - 39,117,576
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258G18.bB6Ng01-258G18.g
ACCGA063864GA063865
length1,1401,112
definitionB6Ng01-258G18.b B6Ng01-258G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,116,432 - 39,117,576)(38,979,878 - 38,981,005)
sequence
gaattcactattattattattggtcttgttcttattcttattcttattct
tactcttattatctttttctttttagcattttaaggactgggcttctctg
tgtagccctgggtatcctgaaactccctctgtatatgaggctaggctcaa
acagagtgacaagagatctgaatgagtggtgggattaaaggcatgtgcca
ctactgctcagaactaaccattgctttgatagatttctctttgaacaaga
taatagttaaggaaatctagtttaacacatctacatcataataatatcag
gtgaactctatcaccaaagtttgcagagtcacgttgggactattatgtcc
ttagatgaaatacttgactttataatgtcttcctggatgcctccatccac
tactttcttacacttcctgctcctgttctttcttttggtcctcctggacc
acttttactttctttaatgatagaacatttaatgatttcattttcttttc
tttacatgtatttttatatgtaactaaaagatgaaacaaagctagagtta
cacattctttttccttaatcattggtgctgattagaaaaatgtaaacccc
aactctgaatttcattgggtctgagaatgactgcacattatacccaatat
tctatataaaaattttgcaaatttaagaacattttactataattcacaaa
tgatgaaatatcatcggtgactgtaaaaatcctattatattctatcctag
acctttatattaaatgatttaaagccttgagaatttacagtaaaagtaca
tagatcagaatctctaaaaataggatattaggtagtaaagaacttgtgat
gtatcctgggaaagtaaaggcagttcactttatcagagctttaaatgaaa
gggatattttgcaatgttaaaagtacttatctatattacatagtgaggta
tgcattccagcctgtggtattaaagtaaaagcgcaagatagagtttttta
aagcaggagtaattacttttttatcacatatactactgaatagtgctaat
ttcttcatagaagatagtcttttacatgtaggttaaggctagggaataga
tctacttcctccaatacaggtcctgttcaatatgaggatt

gaattcttaatcatacttctgtagaacacctgacccttaaggatagttac
tatgagcaggcttttttgtttgtctgtttgtttttattttattgtatttt
tttgttgtttttacttttcttctaacagaatctactactttcctgattcg
gaaatctactagaaagtcatgtgaatttgttgtgactgtgtttgtattcc
attcatattatacttaatgcatataatttttaatatcttaagctttactt
tcagcactatatcttttgacttataaataattggtccaactttactgtta
tcaaattttgacaccggcaattatgcatagagaactcttgaactttaatt
atcctcatggtctattatagtaaatgtttccttgctgatattgctcatgt
gttctctatatctttttggacactttgattaaaactttatcaactgaact
catgcctgtatagaatcagtttctggctttgctgatatttatatactata
ttgttgtctatttataactacattgacttctgatcaaattttgatatatt
ctttttagaatttaagatttttaggcttaaattataattgcttccataat
tgttgtggggaatatatcaaaaacaaacaaaaaggaaaaaaaaatgagga
aactggaactctgaaagatcaaaaaattcttacggatgcatattattccc
acacctatctgcactgcttatgttgaaccctatgtattttggaagagaat
atttttatgttaacattttataatttttcataattaaaaatactttatta
gcttgagatttctttgcttgttttttagattagctaattaagtccttggg
gggtatatttgcactctctttcaaattccaacttaattctactttttctt
tgagagcatattttctataataatagactattaactttttatatgtatgg
tgtgtagtgatgatacagaatgtagtctatattggtattggattaattta
taagatgagatacattgaaatatgttatgactgtattgatttatatttgt
ttttgtctcttaaaatttcagtgtcatcagaatgttcctgtctaatgaaa
tggaggacaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_39116432_39117576
seq2: B6Ng01-258G18.b_46_1185 (reverse)

seq1  AATCCTCCATATTTGACAGGA-CTGTATATGGAGGAAGTTAGATTCTATT  49
      |||||| ||||||  |||||| |||||| ||||||||| |||| ||||||
seq2  AATCCT-CATATTGAACAGGACCTGTAT-TGGAGGAAG-TAGA-TCTATT  46

seq1  CCCCTAGCC-TAACCTACATGTAAAGGACTTATCTCTTATGGAAGAAATT  98
       |||||||| ||||||||||||||| ||| |||||  ||| ||||||| |
seq2  -CCCTAGCCTTAACCTACATGTAAAAGAC-TATCTTCTAT-GAAGAAA-T  92

seq1  TAGCACTATTCAGTAGTTATATGTGAT-AAAAAGTAATTACTCCTGCTTT  147
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  TAGCACTATTCAGTAG-TATATGTGATAAAAAAGTAATTACTCCTGCTTT  141

seq1  AAAAAACTCTATCTTGCGCTTTTACTTTAATACCACAGGCTGGAATGCAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTCTATCTTGCGCTTTTACTTTAATACCACAGGCTGGAATGCAT  191

seq1  ACCTCACTATGTAATATAGATAAGTACTTTTAACATTGCAAAATATCCCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACTATGTAATATAGATAAGTACTTTTAACATTGCAAAATATCCCT  241

seq1  TCATTTTAAAGCTCTGATTAAGTGAACTGCC-TTACTTTCCCAGGATACA  296
      |   |||||||||||||| |||||||||||| ||||||||||||||||||
seq2  TTCATTTAAAGCTCTGATAAAGTGAACTGCCTTTACTTTCCCAGGATACA  291

seq1  TCACAAGTTCTTTACTACCTAATATCCTATTTTTAGAGATTCTGATCTAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGTTCTTTACTACCTAATATCCTATTTTTAGAGATTCTGATCTAT  341

seq1  GTACTTTTACTGTAAATTCTCAAGGCTTTAAATCATTTAATATAAAGGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTTACTGTAAATTCTCAAGGCTTTAAATCATTTAATATAAAGGTC  391

seq1  TAGGATAGAATATAATAGGATTTTTACAGTCACCGATGATATTTCATCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAGAATATAATAGGATTTTTACAGTCACCGATGATATTTCATCAT  441

seq1  TTGTGAATTATAGTAAAATGTTCTTAAATTTGCAAAATTTTTATATAGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATTATAGTAAAATGTTCTTAAATTTGCAAAATTTTTATATAGAA  491

seq1  TATTGGGTATAATGTGCAGTCATTCTCAGACCCAATGAAATTCAGAGTTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGTATAATGTGCAGTCATTCTCAGACCCAATGAAATTCAGAGTTG  541

seq1  GGGTTTACATTTTTCTAATCAGCACCAATGATTAAGGAAAAAGAATGTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTACATTTTTCTAATCAGCACCAATGATTAAGGAAAAAGAATGTGT  591

seq1  AACTCTAGCTTTGTTTCATCTTTTAGTTACATATAAAAATACATGTAAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGCTTTGTTTCATCTTTTAGTTACATATAAAAATACATGTAAAG  641

seq1  AAAAGAAAATGAAATCATTAAATGTTCTATCATTAAAGAAAGTAAAAGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAATGAAATCATTAAATGTTCTATCATTAAAGAAAGTAAAAGTG  691

seq1  GTCCAGGAGGACCAAAAGAAAGAACAGGAGCAGGAAGTGTAAGAAAGTAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGAGGACCAAAAGAAAGAACAGGAGCAGGAAGTGTAAGAAAGTAG  741

seq1  TGGATGGAGGCATCCAGGAAGACATTATAAAGTCAAGTATTTCATCTAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGAGGCATCCAGGAAGACATTATAAAGTCAAGTATTTCATCTAAG  791

seq1  GACATAATAGTCCCAACGTGACTCTGCAAACTTTGGTGATAGAGTTCACC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAATAGTCCCAACGTGACTCTGCAAACTTTGGTGATAGAGTTCACC  841

seq1  TGATATTATTATGATGTAGATGTGTTAAACTAGATTTCCTTAACTATTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTATTATGATGTAGATGTGTTAAACTAGATTTCCTTAACTATTAT  891

seq1  CTTGTTCAAAGAGAAATCTATCAAAGCAATGGTTAGTTCTGAGCAGTAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCAAAGAGAAATCTATCAAAGCAATGGTTAGTTCTGAGCAGTAGT  941

seq1  GGCACATGCCTTTAATCCCACCACTCATTCAGATCTCTTGTCACTCTGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATGCCTTTAATCCCACCACTCATTCAGATCTCTTGTCACTCTGTT  991

seq1  TGAGCCTAGCCTCATATACAGAGGGAGTTTCAGGATACCCAGGGCTACAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTAGCCTCATATACAGAGGGAGTTTCAGGATACCCAGGGCTACAC  1041

seq1  AGAGAAGCCCAGTCCTTAAAATGCTAAAAAGAAAAAGATAATAAGAGTAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCCCAGTCCTTAAAATGCTAAAAAGAAAAAGATAATAAGAGTAA  1091

seq1  GAATAAGAATAAGAATAAGAACAAGACCAATAATAATAATAGTGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGAATAAGAATAAGAACAAGACCAATAATAATAATAGTGAATTC  1140


seq1: chr11_38979878_38981005
seq2: B6Ng01-258G18.g_69_1180

seq1  GAATTCTTAATCATACTTCTGTAGAACACCTGACCCTTAAGGATAGTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATCATACTTCTGTAGAACACCTGACCCTTAAGGATAGTTAC  50

seq1  TATGAGCAGGCTTTTTTGTTTGTCTGTTTGTTTTTATTTTATTGTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCAGGCTTTTTTGTTTGTCTGTTTGTTTTTATTTTATTGTATTTT  100

seq1  TTTGTTGTTTTTACTTTTCTTCTAACAGAATCTACTACTTTCCTGATTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTTTTACTTTTCTTCTAACAGAATCTACTACTTTCCTGATTCG  150

seq1  GAAATCTACTAGAAAGTCATGTGAATTTGTTGTGACTGTGTTTGTATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTACTAGAAAGTCATGTGAATTTGTTGTGACTGTGTTTGTATTCC  200

seq1  ATTCATATTATACTTAATGCATATAATTTTTAATATCTTAAGCTTTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATTATACTTAATGCATATAATTTTTAATATCTTAAGCTTTACTT  250

seq1  TCAGCACTATATCTTTTGACTTATAAATAATTGGTCCAACTTTACTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACTATATCTTTTGACTTATAAATAATTGGTCCAACTTTACTGTTA  300

seq1  TCAAATTTTGACACCGGCAATTATGCATAGAGAACTCTTGAACTTTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTTGACACCGGCAATTATGCATAGAGAACTCTTGAACTTTAATT  350

seq1  ATCCTCATGGTCTATTATAGTAAATGTTTCCTTGCTGATATTGCTCATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCATGGTCTATTATAGTAAATGTTTCCTTGCTGATATTGCTCATGT  400

seq1  GTTCTCTATATCTTTTTGGACACTTTGATTAAAACTTTATCAACTGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTATATCTTTTTGGACACTTTGATTAAAACTTTATCAACTGAACT  450

seq1  CATGCCTGTATAGAATCAGTTTCTGGCTTTGCTGATATTTATATACTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGTATAGAATCAGTTTCTGGCTTTGCTGATATTTATATACTATA  500

seq1  TTGTTGTCTATTTATAACTACATTGACTTCTGATCAAATTTTGATATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTCTATTTATAACTACATTGACTTCTGATCAAATTTTGATATATT  550

seq1  CTTTTTAGAATTTAAGATTTTTAGGCTTAAATTATAATTGCTTCCATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGAATTTAAGATTTTTAGGCTTAAATTATAATTGCTTCCATAAT  600

seq1  TGTTGTGGGGAATATATCAAAAACAAACAAAAAGGAAAAAAAAATGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGGGGAATATATCAAAAACAAACAAAAAGGAAAAAAAAATGAGGA  650

seq1  AACTGGAACTCTGAAAGATCAAAAAATTCTTACGGATGCATATTATTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAACTCTGAAAGATCAAAAAATTCTTACGGATGCATATTATTCCC  700

seq1  ACACCTATCTGCACTGCTTATGTTGAACCCTATGTATTTTGGAAGAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTATCTGCACTGCTTATGTTGAACCCTATGTATTTTGGAAGAGAAT  750

seq1  ATTTTTATGTTAACATTTTATAATTTTTCATAATTAAAAATACTTTATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGTTAACATTTTATAATTTTTCATAATTAAAAATACTTTATTA  800

seq1  GCTTGAGATTTCTTTGCTTGTTTTTTAGATTAGCTAATTAAGTCCTT-GG  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCTTGAGATTTCTTTGCTTGTTTTTTAGATTAGCTAATTAAGTCCTTGGG  850

seq1  GGGTATATTTGCACTCTCTTTCAAATTCCAACTTAATTCTACTTTTTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATATTTGCACTCTCTTTCAAATTCCAACTTAATTCTACTTTTTCTT  900

seq1  TGAGAGCATATTTTCTATAATAATAGACTATTAACTTTTTATATGTATTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGAGAGCATATTTTCTATAATAATAGACTATTAACTTTTTATATGTA-TG  949

seq1  GTGTGTAGTTGATGATACAGAATGTAGTCTATATTGGTATGGATTTAATT  999
      |||||||| ||||||||||||||||||||||||||||||| |  ||||||
seq2  GTGTGTAG-TGATGATACAGAATGTAGTCTATATTGGTATTGGATTAATT  998

seq1  TTATAAAAGAAAGAAAAATACATTGAAATATGTTATGACTGTATTGAATT  1049
         || ||||     | ||||||||||||||||||||||||||||||  |
seq2  ---TATAAGA---TGAGATACATTGAAATATGTTATGACTGTATTGA--T  1040

seq1  TTATATTTTGTTTTTGTCTCTAAAAATTTCAGGTGTCAATCCAGAATTGT  1099
      ||||| ||||||||||||||| ||||||||| ||||||   ||||| |||
seq2  TTATA-TTTGTTTTTGTCTCTTAAAATTTCA-GTGTCA--TCAGAA-TGT  1085

seq1  CCCTGTCTAAATGAAATGAAGGGACAAAC  1128
       ||||||| ||||||||| | ||||||||
seq2  TCCTGTCT-AATGAAATGGA-GGACAAAC  1112


| Home | SequenceCutter | Blast | Download |