BAC Information

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BAC

Clone NameB6Ng01-258J02
Chromosome11 (Build37)
Map Location 36,572,446 - 36,730,871
singlet/doubletdoublet
Overlap geneOdz2
Upstream genePank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream geneLOC100039148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258J02.bB6Ng01-258J02.g
ACCGA063974GA063975
length1,194646
definitionB6Ng01-258J02.b B6Ng01-258J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,729,687 - 36,730,871)(36,572,446 - 36,573,091)
sequence
gaattccaagaaggaaaatgccagagggaaaacaataaaaattaacttca
cccttttgctttttaattaagtaaaactgccaagggtagttgaagaactg
accaatccaatgtcatcatctgtttgaaggaaaaagccatgtcgggatac
tggatttcctccaaaccagtgtggtctcttctagcctgcacaacctctta
gtgtgttgtattgatgaggcttttagttggggtgacaaatgtgaaagaga
aacagtttgaagacaggagtattcattgtaatcattttggcccatgattt
ctgaggtttcaatctttggccactaggctctattgctttgcatctgaggt
aagacttaatttagcaacagaaagagactatagagtgaaggagacaggaa
gcagagagataggaagaagtgggcacaagagaaactccttaaaggcatat
cagaggtgacccacttcctccaacaaggcgccatctcctagtttgtatca
cctcacactaatgtcatccaatcatgactctatgaaaggatgcatccagt
aatgagatgagagcactcctgatccagctgtcccccctccaaagcctatc
agctgtcaacccatccttgaattcatgagctttaaggagccattgtagat
ttaagccagaccattcattgacttaaaatttaactgggctttgtatcttt
gaaaataaaatgaattcaatgtcagtttcataatatatgctaacgtacgt
aaaacccattaaatgactggaaccatgggactggttagaatttgtgacat
aagcatttggggtataagcaaggccactatcttgttaaacacaatatgta
atcagtctgagtattcattctcaaaacatttattaaaccattcctctggc
atatgccagactctaataatagctaataggtattgaacatgcatggcaat
ccagactagaagctaagaacttagtttagcaaaactaatctaatggtcca
taggaaataatttctacactactgtcccccttttttttacttatgatgaa
agcacatgtaagttcccatccctatattgtttaagaccatgagcttacag
cttcttgggaataacggtgtttgttttctggagatatagctgggtgctca
gtagaatttcctttcattagtggaaaaaaataccctctctaatg

gaattctttttattctcagtttgtatagatgaggtataagaggacctact
taatattctgagaaattttaaggtgaccataaaattaaacttggttttca
ataaaattagaaataaaaagtcagttttcaatcaatgacattaaacccca
tgaaccaaaaagcaccatgctgattatatcgtgtaaggataagtttacat
ttaaggataaattctgtctgtttgtttgtttttagtccccgcaatcgtgc
tacagctaagcaatccttggatccttttgctttgttttcaggttgcatct
gatgaaaatcaatttaagaccaactgaacaagacagcaatttcactgcag
ggttgctgggtttctcagaggagccacagaagagaggtgactgtaagaac
ctgtggagaagcagaaatacaggcacctctgtggcacactgctgggttat
ttctggcacctttcttgataggcatttttccccaactctcatgaccaaaa
cttccagaggaaaaatggctatattcagacaaactcagcttgggtgactc
ctctcattcttattctagttttctgtggctacacgggtggtaaggtcatt
aaacatccttcatttaaaagttattatagtgtaggggtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_36729687_36730871
seq2: B6Ng01-258J02.b_47_1240 (reverse)

seq1  CATTAGA----GTA-TTTTTTCTACTTATGAAAGAAATATCTTACTGAGC  45
      |||||||    ||| ||||||| ||| ||||||| || ||  ||||||||
seq2  CATTAGAGAGGGTATTTTTTTCCACTAATGAAAGGAA-ATTCTACTGAGC  49

seq1  A-CCAACTATA-CTCCAGAAAACAAACACGGTTATTCC--AGAAGCTGT-  90
      | ||| ||||| ||||||||||||||||| ||||||||  ||||||||| 
seq2  ACCCAGCTATATCTCCAGAAAACAAACACCGTTATTCCCAAGAAGCTGTA  99

seq1  AGCTCAATGGGTCTAAAC-ATATA-GGATGGG-ACTTACATTGTGCTTTT  137
      ||||| ||||   ||||| ||||| ||||||| ||||||| ||||| |||
seq2  AGCTC-ATGGTCTTAAACAATATAGGGATGGGAACTTACA-TGTGC-TTT  146

seq1  CATCAT-AGT-AAAAAAAGGGGGACAAGTAGTTGGTAGAAATTATTTCCT  185
      |||||| ||| |||||||||||||| ||||||  ||||||||||||||||
seq2  CATCATAAGTAAAAAAAAGGGGGAC-AGTAGT--GTAGAAATTATTTCCT  193

seq1  ATGGACCATTAGATTAGTTTTGCTAAACTAAGTTCTTAGCTTCTAGTCTG  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCATTAGATTAGTTTTGCTAAACTAAGTTCTTAGCTTCTAGTCTG  243

seq1  GATTGCCATGCATGTTCAATACCTATTAGCTATTATTAGAGTCTGGCATA  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCATGCATGTTCAATACCTATTAGCTATTATTAGAGTCTGGCATA  293

seq1  TGCCAGAGGAATGGTTTAATAAATGTTTTGAGAATGAATACTCAGACTGA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAGGAATGGTTTAATAAATGTTTTGAGAATGAATACTCAGACTGA  343

seq1  TTACATATTGTGTTTAACAAGATAGTGGCCTTGCTTATA-CCCAAATGCT  384
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTACATATTGTGTTTAACAAGATAGTGGCCTTGCTTATACCCCAAATGCT  393

seq1  TATGTCACAAATTCTAACCAGTCCCATGGTTCCAGTCATTTAATGGGTTT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCACAAATTCTAACCAGTCCCATGGTTCCAGTCATTTAATGGGTTT  443

seq1  TACGTACGTTAGCATATATTATGAAACTGACATTGAATTCATTTTATTTT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTACGTTAGCATATATTATGAAACTGACATTGAATTCATTTTATTTT  493

seq1  CAAAGATACAAAGCCCAGTTAAATTTTAAGTCAATGAATGGTCTGGCTTA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATACAAAGCCCAGTTAAATTTTAAGTCAATGAATGGTCTGGCTTA  543

seq1  AATCTACAATGGCTCCTTAAAGCTCATGAATTCAAGGATGGGTTGACAGC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACAATGGCTCCTTAAAGCTCATGAATTCAAGGATGGGTTGACAGC  593

seq1  TGATAGGCTTTGGAGGGGGGACAGCTGGATCAGGAGTGCTCTCATCTCAT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGCTTTGGAGGGGGGACAGCTGGATCAGGAGTGCTCTCATCTCAT  643

seq1  TACTGGATGCATCCTTTCATAGAGTCATGATTGGATGACATTAGTGTGAG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGATGCATCCTTTCATAGAGTCATGATTGGATGACATTAGTGTGAG  693

seq1  GTGATACAAACTAGGAGATGGCGCCTTGTTGGAGGAAGTGGGTCACCTCT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACAAACTAGGAGATGGCGCCTTGTTGGAGGAAGTGGGTCACCTCT  743

seq1  GATATGCCTTTAAGGAGTTTCTCTTGTGCCCACTTCTTCCTATCTCTCTG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCCTTTAAGGAGTTTCTCTTGTGCCCACTTCTTCCTATCTCTCTG  793

seq1  CTTCCTGTCTCCTTCACTCTATAGTCTCTTTCTGTTGCTAAATTAAGTCT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTCTCCTTCACTCTATAGTCTCTTTCTGTTGCTAAATTAAGTCT  843

seq1  TACCTCAGATGCAAAGCAATAGAGCCTAGTGGCCAAAGATTGAAACCTCA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAGATGCAAAGCAATAGAGCCTAGTGGCCAAAGATTGAAACCTCA  893

seq1  GAAATCATGGGCCAAAATGATTACAATGAATACTCCTGTCTTCAAACTGT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATGGGCCAAAATGATTACAATGAATACTCCTGTCTTCAAACTGT  943

seq1  TTCTCTTTCACATTTGTCACCCCAACTAAAAGCCTCATCAATACAACACA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCACATTTGTCACCCCAACTAAAAGCCTCATCAATACAACACA  993

seq1  CTAAGAGGTTGTGCAGGCTAGAAGAGACCACACTGGTTTGGAGGAAATCC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGGTTGTGCAGGCTAGAAGAGACCACACTGGTTTGGAGGAAATCC  1043

seq1  AGTATCCCGACATGGCTTTTTCCTTCAAACAGATGATGACATTGGATTGG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCCGACATGGCTTTTTCCTTCAAACAGATGATGACATTGGATTGG  1093

seq1  TCAGTTCTTCAACTACCCTTGGCAGTTTTACTTAATTAAAAAGCAAAAGG  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTTCAACTACCCTTGGCAGTTTTACTTAATTAAAAAGCAAAAGG  1143

seq1  GTGAAGTTAATTTTTATTGTTTTCCCTCTGGCATTTTCCTTCTTGGAATT  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTTAATTTTTATTGTTTTCCCTCTGGCATTTTCCTTCTTGGAATT  1193

seq1  C  1185
      |
seq2  C  1194


seq1: chr11_36572446_36573091
seq2: B6Ng01-258J02.g_67_712

seq1  GAATTCTTTTTATTCTCAGTTTGTATAGATGAGGTATAAGAGGACCTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTATTCTCAGTTTGTATAGATGAGGTATAAGAGGACCTACT  50

seq1  TAATATTCTGAGAAATTTTAAGGTGACCATAAAATTAAACTTGGTTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCTGAGAAATTTTAAGGTGACCATAAAATTAAACTTGGTTTTCA  100

seq1  ATAAAATTAGAAATAAAAAGTCAGTTTTCAATCAATGACATTAAACCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTAGAAATAAAAAGTCAGTTTTCAATCAATGACATTAAACCCCA  150

seq1  TGAACCAAAAAGCACCATGCTGATTATATCGTGTAAGGATAAGTTTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAAAAAGCACCATGCTGATTATATCGTGTAAGGATAAGTTTACAT  200

seq1  TTAAGGATAAATTCTGTCTGTTTGTTTGTTTTTAGTCCCCGCAATCGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATAAATTCTGTCTGTTTGTTTGTTTTTAGTCCCCGCAATCGTGC  250

seq1  TACAGCTAAGCAATCCTTGGATCCTTTTGCTTTGTTTTCAGGTTGCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTAAGCAATCCTTGGATCCTTTTGCTTTGTTTTCAGGTTGCATCT  300

seq1  GATGAAAATCAATTTAAGACCAACTGAACAAGACAGCAATTTCACTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAATCAATTTAAGACCAACTGAACAAGACAGCAATTTCACTGCAG  350

seq1  GGTTGCTGGGTTTCTCAGAGGAGCCACAGAAGAGAGGTGACTGTAAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGGGTTTCTCAGAGGAGCCACAGAAGAGAGGTGACTGTAAGAAC  400

seq1  CTGTGGAGAAGCAGAAATACAGGCACCTCTGTGGCACACTGCTGGGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAGAAGCAGAAATACAGGCACCTCTGTGGCACACTGCTGGGTTAT  450

seq1  TTCTGGCACCTTTCTTGATAGGCATTTTTCCCCAACTCTCATGACCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCACCTTTCTTGATAGGCATTTTTCCCCAACTCTCATGACCAAAA  500

seq1  CTTCCAGAGGAAAAATGGCTATATTCAGACAAACTCAGCTTGGGTGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAGGAAAAATGGCTATATTCAGACAAACTCAGCTTGGGTGACTC  550

seq1  CTCTCATTCTTATTCTAGTTTTCTGTGGCTACACGGGTGGTAAGGTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATTCTTATTCTAGTTTTCTGTGGCTACACGGGTGGTAAGGTCATT  600

seq1  AAACATCCTTCATTTAAAAGTTATTATAGTGTAGGGGTGTGTGTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCCTTCATTTAAAAGTTATTATAGTGTAGGGGTGTGTGTGT  646


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