BAC Information

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BAC

Clone NameB6Ng01-258P19
Chromosome11 (Build37)
Map Location 26,795,024 - 26,929,778
singlet/doubletdoublet
Overlap geneLOC666270, LOC100042367
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300
Downstream geneLOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258P19.bB6Ng01-258P19.g
ACCGA064286GA064287
length1,1181,055
definitionB6Ng01-258P19.b B6Ng01-258P19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,795,024 - 26,796,158)(26,928,733 - 26,929,778)
sequence
gaattcaggggttaactaaacagattacaaaattacaagactgtaattag
taataaagtaataattctatagagtttcaaatatgcatgaacttgatata
tttgtattaagatttttttaagtcaattaattgtccattagacagatgtt
tgggtcatgagctatccaaagaattttaaagacaaccaattacccagctg
gactggaaacaaatgtttatccttaaacttaggtcagttttctatcaacc
acttttctaacatttagagtcctgtattataaaccgagaatatactgtgt
tgattgcaatcctttctctggaattcaactgtacttttctttctttgata
acactgtatgaatcttcttgttttaactgatcagtgtgtcacttttgctt
agttttaaggatgctttgcatgtgtcagatagcagcactttttctgatgc
tatattgtacacacttcccctcagatcatggctagttttaattctcttag
caatgtctctcataagcatgaaagtttgtttctaataaaagttagtttat
aaactctctactcattcatgcctttcttactgcagtaatatgccacccca
gatcctagtttacagtgtttcctgtattactaccttcagagaggatttta
gttttgcattttatacatttttacgctccattttttgcttaacttttatg
aagtgagtaagggctgggtctaaattccttgggcatgccctgtgttactg
gctttgttcctgtgtcttgctcaggttatagtctttgggctcatcgtgag
caccctgtttgctcagtgccatttgtgcggtgtttcctcagtgccattct
ttcttcattagcatgatttcactgtgtcctaagtcatgtagtattagtct
agtacctgtctctccactgcaacaaaaaagccatactgtgtgctttgcct
ttccatatgtacttcaaattaatcattgtatcataaatgattttttaatt
gagactgactgatgtatcatcaactgtgaagaataacatctagtataatg
aattcatgtatacataattattattactaatttgatcaaggttttggcta
tttaacgagaaaatgtaa

gaattctcagattcaactgaggtttcgtcttcacagtagcacatgtgaag
gcctctctctccaaccctgccacaaattggaaatttctttggtataattt
aaaacagcaacaacaatacctaattatagttttcttgcttttccttagtt
ctttcttttgctctaagagaacatttgggtttggggttttgaacatccac
tgagtttttggaatttagatcatgcaatcacacacacacacacacacaca
cacacacacacacacacacacacacactcacacatccttgattgtgtcct
cctctggtgtgattgatccttttgctttgctttgattgctgactctcatt
tctggtatttctatttaggctctttttcagagtccctgttcctgggacag
atttccccacttttgttttccaagctactgattcagctgctttgaaaact
ctcttttctaggttctggattgatttccttaattaatatgattgtatact
ctatgagaccactgagccttttaaaaattagactctactctctaattctt
ttatattgactatttcatcatctttagtttccagtattgaggaagtattg
atgtggaggcagtatagtcgtttaatttcttgtgtgtgtgtgtgtgtgtt
tatgtgtgtctctgtgtgtgtacgcacattttcttgtgttttttcatgga
agttgattttttttttttggttattgtatctgttggaatgggtagggtct
ctagttttaatttttattttatccctttatctcactttttgttatttttt
tatgtgagtcttactgatttcacgtgagtctttagtttaagtctatgtta
ttcactactgtgtatgggggaagaaaaccacacttaacagacacaattat
ttgacagaaggttcccatgtcagcttcacagtagaaaacacttgtatttt
cagttgtaccccttctgtaatgttcagagatagtggccctgggggtactg
attgaaggtatgcataattttatattttttttggaaactaaagttatata
gctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26795024_26796158
seq2: B6Ng01-258P19.b_45_1162

seq1  GAATTCAGGGGTTAACTAAACAGATTACAAAATTACAAGACTGTAATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGTTAACTAAACAGATTACAAAATTACAAGACTGTAATTAG  50

seq1  TAATAAAGTAATAATTCTATAGAGTTTCAAATATGCATGAACTTGATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGTAATAATTCTATAGAGTTTCAAATATGCATGAACTTGATATA  100

seq1  TTTGTATTAAGATTTTTTTAAGTCAATTAATTGTCCATTAGACAGATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTAAGATTTTTTTAAGTCAATTAATTGTCCATTAGACAGATGTT  150

seq1  TGGGTCATGAGCTATCCAAAGAATTTTAAAGACAACCAATTACCCAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCATGAGCTATCCAAAGAATTTTAAAGACAACCAATTACCCAGCTG  200

seq1  GACTGGAAACAAATGTTTATCCTTAAACTTAGGTCAGTTTTCTATCAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAAACAAATGTTTATCCTTAAACTTAGGTCAGTTTTCTATCAACC  250

seq1  ACTTTTCTAACATTTAGAGTCCTGTATTATAAACCGAGAATATACTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTAACATTTAGAGTCCTGTATTATAAACCGAGAATATACTGTGT  300

seq1  TGATTGCAATCCTTTCTCTGGAATTCAACTGTACTTTTCTTTCTTTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCAATCCTTTCTCTGGAATTCAACTGTACTTTTCTTTCTTTGATA  350

seq1  ACACTGTATGAATCTTCTTGTTTTAACTGATCAGTGTGTCACTTTTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTATGAATCTTCTTGTTTTAACTGATCAGTGTGTCACTTTTGCTT  400

seq1  AGTTTTAAGGATGCTTTGCATGTGTCAGATAGCAGCACTTTTTCTGATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAGGATGCTTTGCATGTGTCAGATAGCAGCACTTTTTCTGATGC  450

seq1  TATATTGTACACACTTCCCCTCAGATCATGGCTAGTTTTAATTCTCTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTACACACTTCCCCTCAGATCATGGCTAGTTTTAATTCTCTTAG  500

seq1  CAATGTCTCTCATAAGCATGAAAGTTTGTTTCTAATAAAAGTTAGTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTCTCATAAGCATGAAAGTTTGTTTCTAATAAAAGTTAGTTTAT  550

seq1  AAACTCTCTACTCATTCATGCCTTTCTTACTGCAGTAATATGCCACCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTCTACTCATTCATGCCTTTCTTACTGCAGTAATATGCCACCCCA  600

seq1  GATCCTAGTTTACAGTGTTTCCTGTATTACTACCTTCAGAGAGGATTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTAGTTTACAGTGTTTCCTGTATTACTACCTTCAGAGAGGATTTTA  650

seq1  GTTTTGCATTTTATACATTTTTACGCTCCATTTTTTGCTTAACTTTTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCATTTTATACATTTTTACGCTCCATTTTTTGCTTAACTTTTATG  700

seq1  AAGTGAGTAAGGGCTGGGTCTAAATTCCTTGGGCATGCCCTGTGTTACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTAAGGGCTGGGTCTAAATTCCTTGGGCATGCCCTGTGTTACTG  750

seq1  GCTTTGTTCCTGTGTCTTGCTCAGGTTATAGTCTTTGGGCTCATCGTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTCCTGTGTCTTGCTCAGGTTATAGTCTTTGGGCTCATCGTGAG  800

seq1  CACCCTGTTTGCTCAGTGCCATTTGTGCGGTGTTTCCTCAGTGCCATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGTTTGCTCAGTGCCATTTGTGCGGTGTTTCCTCAGTGCCATTCT  850

seq1  TTCTTCATTAGCATGATTTCACTGTGTCCTAAGTCATGTAGTATTAGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTAGCATGATTTCACTGTGTCCTAAGTCATGTAGTATTAGTCT  900

seq1  AGTACCTGTCTCTCCACTGCAACAAAAAAGCCATACTGTGTGCTTTGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTGTCTCTCCACTGCAACAAAAAAGCCATACTGTGTGCTTTGCCT  950

seq1  TTCCATATGTACTTCAAAATTAATCAATTGTAATCATAAAATGATTTTTT  1000
      ||||||||||||||| ||||||||| ||||| ||||| ||||||||||||
seq2  TTCCATATGTACTTC-AAATTAATC-ATTGT-ATCAT-AAATGATTTTTT  996

seq1  AATTGAGAACTGAACTGAATGTATCAATCAAACTGTGAAGAATTAACATC  1050
      ||||||| |||| |||| ||||||| ||| |||||||||||| |||||||
seq2  AATTGAG-ACTG-ACTG-ATGTATC-ATC-AACTGTGAAGAA-TAACATC  1040

seq1  TTAGTAATAATG-ATTCATGGTATACATATTTAATTATTTACCTTATTTG  1099
       |||| |||||| |||||| ||||||||| || ||||||   || |||||
seq2  -TAGT-ATAATGAATTCAT-GTATACATAATT-ATTATT--ACTAATTTG  1084

seq1  ATCAAAGTTTT-GCTATTTTACAGAAGGAAAATGTAA  1135
      ||||| ||||| ||||||| || ||  ||||||||||
seq2  ATCAAGGTTTTGGCTATTTAAC-GA--GAAAATGTAA  1118


seq1: chr11_26928733_26929778
seq2: B6Ng01-258P19.g_68_1122 (reverse)

seq1  TTAGCTATTAATACTTTTAGTTCC---AAAAAATAT-AAATTATGCATTA  46
      ||||||||  |||  ||||||| |   ||||||||| |||||||||| ||
seq2  TTAGCTAT--ATAACTTTAGTTTCCAAAAAAAATATAAAATTATGCA-TA  47

seq1  CCTCCAATCAGTA-CCCCAGGGCCACTATCTCTGAACATTACAGA--GGG  93
      ||| ||||||||| |||||||||||||||||||||||||||||||  |||
seq2  CCTTCAATCAGTACCCCCAGGGCCACTATCTCTGAACATTACAGAAGGGG  97

seq1  TACAACTG-AAATAC-AGTGTTTTCTACTGTG-AGCTGACATGGGAA-CT  139
      |||||||| |||||| |||||||||||||||| |||||||||||||| ||
seq2  TACAACTGAAAATACAAGTGTTTTCTACTGTGAAGCTGACATGGGAACCT  147

seq1  TCTGTCAAATAATTGTGTCTGTT-AGTGTGGTTTTCTTCCACCATACACA  188
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  TCTGTCAAATAATTGTGTCTGTTAAGTGTGGTTTTCTTCCCCCATACACA  197

seq1  GTAGTGAATAACATAGACTTAAACTAAAGACTCACGTGAAATCAGTAAGA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAATAACATAGACTTAAACTAAAGACTCACGTGAAATCAGTAAGA  247

seq1  CTCACATAAAAAATAAACAAAAAGTGAGATAAAGGGATAAAATAAAAATT  288
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  CTCACATAAAAAAATAACAAAAAGTGAGATAAAGGGATAAAATAAAAATT  297

seq1  AAAACTAGAGACCCTACCCATTCCAACAGATACAATAACCAAAAAAAAAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAGAGACCCTACCCATTCCAACAGATACAATAACCAAAAAAAAAA  347

seq1  AATCAACTTCCATGAAAAAACACAAGAAAATGTGCGTACACACACAGAGA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACTTCCATGAAAAAACACAAGAAAATGTGCGTACACACACAGAGA  397

seq1  CACACATAAACACACACACACACACACAAGAAATTAAACGACTATACTGC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAAACACACACACACACACACAAGAAATTAAACGACTATACTGC  447

seq1  CTCCACATCAATACTTCCTCAATACTGGAAACTAAAGATGATGAAATAGT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATCAATACTTCCTCAATACTGGAAACTAAAGATGATGAAATAGT  497

seq1  CAATATAAAAGAATTAGAGAGTAGAGTCTAATTTTTAAAAGGCTCAGTGG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAAAAGAATTAGAGAGTAGAGTCTAATTTTTAAAAGGCTCAGTGG  547

seq1  TCTCATAGAGTATACAATCATATTAATTAAGGAAATCAATCCAGAACCTA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAGAGTATACAATCATATTAATTAAGGAAATCAATCCAGAACCTA  597

seq1  GAAAAGAGAGTTTTCAAAGCAGCTGAATCAGTAGCTTGGAAAACAAAAGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGAGTTTTCAAAGCAGCTGAATCAGTAGCTTGGAAAACAAAAGT  647

seq1  GGGGAAATCTGTCCCAGGAACAGGGACTCTGAAAAAGAGCCTAAATAGAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATCTGTCCCAGGAACAGGGACTCTGAAAAAGAGCCTAAATAGAA  697

seq1  ATACCAGAAATGAGAGTCAGCAATCAAAGCAAAGCAAAAGGATCAATCAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGAAATGAGAGTCAGCAATCAAAGCAAAGCAAAAGGATCAATCAC  747

seq1  ACCAGAGGAGGACACAATCAAGGATGTGTGAGTGTGTGTGTGTGTGTGTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGAGGACACAATCAAGGATGTGTGAGTGTGTGTGTGTGTGTGTG  797

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTGCATGATCTAAATTCCA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTGCATGATCTAAATTCCA  847

seq1  AAAACTCAGTGGATGTTCAAAACCCCAAACCCAAATGTTCTCTTAGAGCA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCAGTGGATGTTCAAAACCCCAAACCCAAATGTTCTCTTAGAGCA  897

seq1  AAAGAAAGAACTAAGGAAAAGCAAGAAAACTATAATTAGGTATTGTTGTT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAACTAAGGAAAAGCAAGAAAACTATAATTAGGTATTGTTGTT  947

seq1  GCTGTTTTAAATTATACCAAAGAAATTTCCAATTTGTGGCAGGGTTGGAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTAAATTATACCAAAGAAATTTCCAATTTGTGGCAGGGTTGGAG  997

seq1  AGAGAGGCCTTCACATGTGCTACTGTGAAGACGAAACCTCAGTTGAATCT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCCTTCACATGTGCTACTGTGAAGACGAAACCTCAGTTGAATCT  1047

seq1  GAGAATTC  1046
      ||||||||
seq2  GAGAATTC  1055


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