BAC Information

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BAC

Clone NameB6Ng01-259G01
Chromosome11 (Build37)
Map Location 50,247,167 - 50,384,875
singlet/doubletdoublet
Overlap genenone
Upstream geneOlfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1
Downstream geneAdamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259G01.bB6Ng01-259G01.g
ACCGA064572GA064573
length1,07191
definitionB6Ng01-259G01.b B6Ng01-259G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,247,167 - 50,248,234)(50,384,785 - 50,384,875)
sequence
gaattccacactacacttggtctggtgtggccagtcagttcttgggcctg
ttttccctcctatgattttgaaatatccatgtttcccaaccctttcaatt
caccctcagagtgacaagcttttagtttggttctagtcccagaaaccacc
catttaataagtctgtgttgcatggtctgtgactgacagatggtgaagtt
gtgggtccatccaggggctccagtcatccatgagtggcaactcagaggca
actccactgtagcctgaacagtgccccccttcctgtgactactctcctgc
atcaacagcagccctacttgtgactgtttcaatttcctgaagtcaacact
actaacgccattcctgcatattctattttaacatttcttgaccacatcag
acctcaatccctccctctgccctcccggatccccactgctgataagacac
ctcacctgtaagagaaattctctctctcatcttttctgatcttcaccttc
tcaggtttattgcacaacaaattgatccccatcaccattaatcctcccta
gttttcttttctcctaacatcccttctccctaaacagagccaaaaactgc
ctataaaatagcatctcctatggcacagcctgaaaaagcacatttttatt
catgatggagtgagttagagaagggcctagcctgccctcagcatcctcat
cttgtgagacaaaagagtcctcacctcgtaagctgtgcctcctgttttcc
tccatcatgacccatcagtctttctgactccttttcatatcattatacag
gatgtggatttatgaactccctcataatctcttcatgcgctttaaaagca
tttatttatttatttatttatttgagacaggatctccctgtgtaaccctg
gttgtcctggagctcagccggtcttgatctcacagagatcttcctgactt
tgcctctcaggctgggattaaagtacactatcaccccagagagtcatttt
atttctgttgtagcctctgtgtgtgtgtgcatgaggtttatgtataccac
acatatgcaataagtgccctg
cttatcctcttagcctctgtcactcactcccacccgtcatagtgctggtg
ctcttctggggcagtgtgtgtgtgtgtgtgtgtgggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50247167_50248234
seq2: B6Ng01-259G01.b_46_1116

seq1  GAATTCCACACTACACTTGGTCTGGTGTGGCCAGTCAGTTCTTGGGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACTACACTTGGTCTGGTGTGGCCAGTCAGTTCTTGGGCCTG  50

seq1  TTTTCCCTCCTATGATTTTGAAATATCCATGTTTCCCAACCCTTTCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTCCTATGATTTTGAAATATCCATGTTTCCCAACCCTTTCAATT  100

seq1  CACCCTCAGAGTGACAAGCTTTTAGTTTGGTTCTAGTCCCAGAAACCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCAGAGTGACAAGCTTTTAGTTTGGTTCTAGTCCCAGAAACCACC  150

seq1  CATTTAATAAGTCTGTGTTGCATGGTCTGTGACTGACAGATGGTGAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATAAGTCTGTGTTGCATGGTCTGTGACTGACAGATGGTGAAGTT  200

seq1  GTGGGTCCATCCAGGGGCTCCAGTCATCCATGAGTGGCAACTCAGAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCCATCCAGGGGCTCCAGTCATCCATGAGTGGCAACTCAGAGGCA  250

seq1  ACTCCACTGTAGCCTGAACAGTGCCCCCCTTCCTGTGACTACTCTCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACTGTAGCCTGAACAGTGCCCCCCTTCCTGTGACTACTCTCCTGC  300

seq1  ATCAACAGCAGCCCTACTTGTGACTGTTTCAATTTCCTGAAGTCAACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAGCAGCCCTACTTGTGACTGTTTCAATTTCCTGAAGTCAACACT  350

seq1  ACTAACGCCATTCCTGCATATTCTATTTTAACATTTCTTGACCACATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACGCCATTCCTGCATATTCTATTTTAACATTTCTTGACCACATCAG  400

seq1  ACCTCAATCCCTCCCTCTGCCCTCCCGGATCCCCACTGCTGATAAGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAATCCCTCCCTCTGCCCTCCCGGATCCCCACTGCTGATAAGACAC  450

seq1  CTCACCTGTAAGAGAAATTCTCTCTCTCATCTTTTCTGATCTTCACCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGTAAGAGAAATTCTCTCTCTCATCTTTTCTGATCTTCACCTTC  500

seq1  TCAGGTTTATTGCACAACAAATTGATCCCCATCACCATTAATCCTCCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTTATTGCACAACAAATTGATCCCCATCACCATTAATCCTCCCTA  550

seq1  GTTTTCTTTTCTCCTAACATCCCTTCTCCCTAAACAGAGCCAAAAACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTTTCTCCTAACATCCCTTCTCCCTAAACAGAGCCAAAAACTGC  600

seq1  CTATAAAATAGCATCTCCTATGGCACAGCCTGAAAAAGCACATTTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAATAGCATCTCCTATGGCACAGCCTGAAAAAGCACATTTTTATT  650

seq1  CATGATGGAGTGAGTTAGAGAAGGGCCTAGCCTGCCCTCAGCATCCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGGAGTGAGTTAGAGAAGGGCCTAGCCTGCCCTCAGCATCCTCAT  700

seq1  CTTGTGAGACAAAAGAGTCCTCACCTCGTAAGCTGTGCCTCCTGTTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAGACAAAAGAGTCCTCACCTCGTAAGCTGTGCCTCCTGTTTTCC  750

seq1  TCCATCATGACCCATCAGTCTTTCTGACTCCTTTTCATATCATTATACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCATGACCCATCAGTCTTTCTGACTCCTTTTCATATCATTATACAG  800

seq1  GATGTGGATTTATGAACTCCCTCATAATCTCTTCATGCGCTTTAAAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGATTTATGAACTCCCTCATAATCTCTTCATGCGCTTTAAAAGCA  850

seq1  TTTATTTATTTATTTATTTATTTGAGACAGGATCTCCCTGTGTAACCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTATTTATTTGAGACAGGATCTCCCTGTGTAACCCTG  900

seq1  GTTGTCCTGGAGCTCAGGCCGGTCTTGATCTCACAGAGATCTTCCTGACT  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTGTCCTGGAGCTCA-GCCGGTCTTGATCTCACAGAGATCTTCCTGACT  949

seq1  TTGCCTCTCAGGGCTGGGATTAAAGTACACTATCACCCCAGAGAGTTCAT  1000
      |||||||||| |||||||||||||||||||||||||||||||||| ||| 
seq2  TTGCCTCTCA-GGCTGGGATTAAAGTACACTATCACCCCAGAGAG-TCA-  996

seq1  TTTTATTTCTG-TGTAG-CTCTGTGTGTGTGTGCATGA-GTTTATGTATA  1047
      ||||||||||| ||||| |||||||||||||||||||| |||||||||||
seq2  TTTTATTTCTGTTGTAGCCTCTGTGTGTGTGTGCATGAGGTTTATGTATA  1046

seq1  C--CACATATGCA--TAGTGCCCTG  1068
      |  ||||||||||   |||||||||
seq2  CCACACATATGCAATAAGTGCCCTG  1071

seq1: chr11_50384785_50384875
seq2: B6Ng01-259G01.g_73_163 (reverse)

seq1  CCCCCCCCACACACACACACACACACACTGCCCCAGAAGAGCACCAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCACACACACACACACACACACTGCCCCAGAAGAGCACCAGCAC  50

seq1  TATGACGGGTGGGAGTGAGTGACAGAGGCTAAGAGGATAAG  91
      |||||||||||||||||||||||||||||||||||||||||
seq2  TATGACGGGTGGGAGTGAGTGACAGAGGCTAAGAGGATAAG  91