BAC Information

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BAC

Clone NameB6Ng01-259O23
Chromosome11 (Build37)
Map Location 88,397,460 - 88,556,201
singlet/doubletdoublet
Overlap geneMsi2, LOC100038945
Upstream geneSept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793
Downstream geneAkap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259O23.bB6Ng01-259O23.g
ACCGA064988GA064989
length4701,073
definitionB6Ng01-259O23.b B6Ng01-259O23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,555,726 - 88,556,201)(88,397,460 - 88,398,536)
sequence
ctgccccctgctgtataataaatctgatactaaaattagtgccggcctct
tgagccataattcttgccgaggcaataaagaagtgtgtgcgtgcgtgtgt
gctcatgccggtgtgcttgtgtgcgtccagcttgtctctcaggactgtgg
gatgtcggataagtaactgggtctcacaattgattttgtgtgacagcgtc
tcctcggctccctgcttcctccccctctcctgtgatggaagtgtagggag
gaggtagaggggaaatattgccgcgtgcctttcaggtttgtgtaaatctc
tgtcacgtaggtagatgttcttagagaatctattggaatgttttataatt
gactgttttacttggatgacattactcaactcctctcaggagcttcctta
cgctccgggtgggggtgagacttttacttccaggtaactttctccacgga
agggacttacttggggtggc
gaattcttgtttgaagcaaaaacatgaagatttaggagaagcgaggctag
ggagctgaatctatttctaactccactggccagagcagaaacaaggttgg
gaggctgacgcgagcaggaagacacaagacacaagcacagggaggattta
cagccagcatagcgatcttgttaactggtggtgatgctgtctgccacctg
ggcctaaacggggaatgtgggaaatgaggcagcactttgctgtcccctgt
cccctgtcctcttctccataagatatgcttctgaaaggagggattaacac
aaaccagacagaggacaggaatgacgtggggacaaggttggctttgcatc
tggctatctcaggatcatgaactgagggaatgagtcttcctggccccact
tacaagtctaaggaacactccgggctctggaagatgccaagcagatgagc
aaggaggcccccttccctcctgccagcccacctgcgcaaaccacttcaga
ggatgaaggccccgtgggagcagagacagccacaaaggacacacacagat
ttttgttttccaggctacttctgagagaatcacacactgtacagagctgt
ttatctgtgccacacatttggaagtgataaaaaaaaaaaaatctatccca
ggatcacagtccactttcaggaatatggtaacttgcctctttatttctca
caaatcccttgcttttccaatttcaaaggctttatgccaggggttttgtt
ttgttttgtttttccttctaggtaagactttcctcacactttctgaatca
aaaggaatccaaacagaggccacagccacacctccatatacctactacag
cctggggctaaaaagcaggcaccaggtttcactctcaaatatgcactccc
agagcccccacatcagtggactaaggagggaattcctatgtgaaaagcca
gttcattctgggtttccaactgttttcctatgaagtttcaaacacaatca
ctctttggagccttagctactttctcagcccctcaacacaggcccagctt
ctacagaggtgcttaagagcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88555726_88556201
seq2: B6Ng01-259O23.b_46_521 (reverse)

seq1  GCCACCCCAAGTAAGTCCCTTCCGTGGACAAAGTTCCCTGGAAGGAAAAG  50
      |||||||||||||||||||||||||||| |||||| |||||||| |||||
seq2  GCCACCCCAAGTAAGTCCCTTCCGTGGAGAAAGTTACCTGGAAGTAAAAG  50

seq1  TCTCACCCCCACCCGGAGCGTAAGGAAGCTCCTGAGAGGAGTTGAGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCCCCACCCGGAGCGTAAGGAAGCTCCTGAGAGGAGTTGAGTAAT  100

seq1  GTCATCCAAGTAAAACAGTCAATTATAAAACATTCCAATAGATTCTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCAAGTAAAACAGTCAATTATAAAACATTCCAATAGATTCTCTAA  150

seq1  GAACATCTACCTACGTGACAGAGATTTACACAAACCTGAAAGGCACGCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCTACCTACGTGACAGAGATTTACACAAACCTGAAAGGCACGCGG  200

seq1  CAATATTTCCCCTCTACCTCCTCCCTACACTTCCATCACAGGAGAGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTCCCCTCTACCTCCTCCCTACACTTCCATCACAGGAGAGGGGG  250

seq1  AGGAAGCAGGGAGCCGAGGAGACGCTGTCACACAAAATCAATTGTGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCAGGGAGCCGAGGAGACGCTGTCACACAAAATCAATTGTGAGAC  300

seq1  CCAGTTACTTATCCGACATCCCACAGTCCTGAGAGACAAGCTGGACGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTACTTATCCGACATCCCACAGTCCTGAGAGACAAGCTGGACGCAC  350

seq1  ACAAGCACACCGGCATGAGCACACACGCACGCACACACTTCTTTATTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCACACCGGCATGAGCACACACGCACGCACACACTTCTTTATTGCC  400

seq1  TCGGCAAGAATTATGGCTCAAGAGGCCGGCACTAATTTTAGTATCAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCAAGAATTATGGCTCAAGAGGCCGGCACTAATTTTAGTATCAGATT  450

seq1  TATTATACAGCAGGGGGCAGGAATTC  476
      ||||||||||||||||||||||||||
seq2  TATTATACAGCAGGGGGCAGGAATTC  476

seq1: chr11_88397460_88398536
seq2: B6Ng01-259O23.g_68_1140

seq1  GAATTCTTGTTTGAAGCAAAAACATGAAGATTTAGGAGAAGCGAGGCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTTGAAGCAAAAACATGAAGATTTAGGAGAAGCGAGGCTAG  50

seq1  GGAGCTGAATCTATTTCTAACTCCACTGGCCAGAGCAGAAACAAGGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGAATCTATTTCTAACTCCACTGGCCAGAGCAGAAACAAGGTTGG  100

seq1  GAGGCTGACGCGAGCAGGAAGACACAAGACACAAGCACAGGGAGGATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGACGCGAGCAGGAAGACACAAGACACAAGCACAGGGAGGATTTA  150

seq1  CAGCCAGCATAGCGATCTTGTTAACTGGTGGTGATGCTGTCTGCCACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCATAGCGATCTTGTTAACTGGTGGTGATGCTGTCTGCCACCTG  200

seq1  GGCCTAAACGGGGAATGTGGGAAATGAGGCAGCACTTTGCTGTCCCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAACGGGGAATGTGGGAAATGAGGCAGCACTTTGCTGTCCCCTGT  250

seq1  CCCCTGTCCTCTTCTCCATAAGATATGCTTCTGAAAGGAGGGATTAACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTCCTCTTCTCCATAAGATATGCTTCTGAAAGGAGGGATTAACAC  300

seq1  AAACCAGACAGAGGACAGGAATGACGTGGGGACAAGGTTGGCTTTGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGACAGAGGACAGGAATGACGTGGGGACAAGGTTGGCTTTGCATC  350

seq1  TGGCTATCTCAGGATCATGAACTGAGGGAATGAGTCTTCCTGGCCCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATCTCAGGATCATGAACTGAGGGAATGAGTCTTCCTGGCCCCACT  400

seq1  TACAAGTCTAAGGAACACTCCGGGCTCTGGAAGATGCCAAGCAGATGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTCTAAGGAACACTCCGGGCTCTGGAAGATGCCAAGCAGATGAGC  450

seq1  AAGGAGGCCCCCTTCCCTCCTGCCAGCCCACCTGCGCAAACCACTTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGCCCCCTTCCCTCCTGCCAGCCCACCTGCGCAAACCACTTCAGA  500

seq1  GGATGAAGGCCCCGTGGGAGCAGAGACAGCCACAAAGGACACACACAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGGCCCCGTGGGAGCAGAGACAGCCACAAAGGACACACACAGAT  550

seq1  TTTTGTTTTCCAGGCTACTTCTGAGAGAATCACACACTGTACAGAGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTCCAGGCTACTTCTGAGAGAATCACACACTGTACAGAGCTGT  600

seq1  TTATCTGTGCCACACATTTGGAAGTGATAAAAAAAAAAAAATCTATCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTGCCACACATTTGGAAGTGATAAAAAAAAAAAAATCTATCCCA  650

seq1  GGATCACAGTCCACTTTCAGGAATATGGTAACTTGCCTCTTTATTTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACAGTCCACTTTCAGGAATATGGTAACTTGCCTCTTTATTTCTCA  700

seq1  CAAATCCCTTGCTTTTCCAATTTCAAAGGCTTTATGCCAGGGGTTTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCTTGCTTTTCCAATTTCAAAGGCTTTATGCCAGGGGTTTTGTT  750

seq1  TTGTTTTGTTTTTCCTTCTAGGTAAGACTTTCCTCACACTTTCTGAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTTCCTTCTAGGTAAGACTTTCCTCACACTTTCTGAATCA  800

seq1  AAAGGAATCCAAACAGAGGCCACAGCCACACCTCCATATACCTACTACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATCCAAACAGAGGCCACAGCCACACCTCCATATACCTACTACAG  850

seq1  CCTGGGGCTAAAAAGCAGGCACCAGGTTTTCACTCTCAAAATATGCACTC  900
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  CCTGGGGCTAAAAAGCAGGCACCAGG-TTTCACTCTC-AAATATGCACTC  898

seq1  CCAGAGCCCCCACATCAGTGGACTAAAGGAGGG-ATTCCTATGTGAAAAA  949
      |||||||||||||||||||||||| |||||||| ||||||||||| ||||
seq2  CCAGAGCCCCCACATCAGTGGACT-AAGGAGGGAATTCCTATGTG-AAAA  946

seq1  GCCAGTTCATTCT-GGTTTCCAACTGTTTTTCCTATGAAGTTTTCAAACA  998
      ||||||||||||| |||||||||||| ||||||||||||| |||||||||
seq2  GCCAGTTCATTCTGGGTTTCCAACTG-TTTTCCTATGAAG-TTTCAAACA  994

seq1  CCAATCACTCTTTGGAGCCTTAGCTAACTTTCTCAGCCCCTC-ACACA-G  1046
       |||||||||||||||||||||||| |||||||||||||||| ||||| |
seq2  -CAATCACTCTTTGGAGCCTTAGCT-ACTTTCTCAGCCCCTCAACACAGG  1042

seq1  CCCAGCTCCTACAGAAGGTGC-TAAGAGCACT  1077
      ||||||| |||||| |||||| ||||||||||
seq2  CCCAGCTTCTACAG-AGGTGCTTAAGAGCACT  1073