BAC Information

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BAC

Clone NameB6Ng01-260I23
Chromosome11 (Build37)
Map Location 42,073,275 - 42,206,014
singlet/doubletdoublet
Overlap geneGabra6
Upstream geneLOC100039285, Hspd1, LOC100039292, Gabrg2, Gabra1
Downstream geneGabrb2, Atp10b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260I23.bB6Ng01-260I23.g
ACCGA065450GA065451
length957992
definitionB6Ng01-260I23.b B6Ng01-260I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,205,060 - 42,206,014)(42,073,275 - 42,073,956)
sequence
gaattccacaaagaggcactgctatttgaaggttgtgtagttgagagatt
ttctaaattagtctcatgttcatactgtaccaaagttgatcaaaatggat
tcataaaatgatagaagtgaaaaaagaccactaaatcttactattttaag
ttcttgtatacttttatatttgcatggatcccatgtttgaagcctttaca
caggaacagtttgtgaaaaatactaacaacgatgtcaaatgaaatgctct
aagatatttctggctggcagaacatcagatccttacaaatcattaaaata
taatcattagactttatgatcattttcagaggaaattcatggagaacatt
atgacaaatatatgcatatataacattatacagaaaaagcatctgagtgt
atgaaataacatagtacctatggcatagaggattctccatggaaattaga
atgttttatgtatagtgaacatacgcagcatcaaattttagactgttaat
ctaataaattattagtagataatataaaaataagataagttagtatttgc
caacctgagagattatttcagcttttcttggtgcagacattttatatgga
tggagtatgctatatagaattcaccctactgcctccagaaatttgagttt
taagaaaaatatcagcttaatatgtctttatgtatacaactgaaaatacc
taagctgatcaattttaaaaggattacaagattgaatatagaaacttagt
cttgtctctctcccttgcaaatcatatatatatatatatatatatatata
tatatatatatatatatatacatacacttttggttattatctttaaattg
tcaagtataggggtccaactactctctattttctcctatttgtggatacc
ttgtgagggaaaaagctgagaggagagatgtaagggagagagtgaaaggg
ttagaga

gaattcacagctctttatgcagttcatatataacattaagggagacactc
atagtgatgtgtgctgaaacagatgtcagcgaatccagcatcaattcact
gacatgcattccagtcgggccaaggtctaacaccgtgctcttctctcccg
tatggctcatgttgaattcaaatctaggttttcaaagtcagaggctaaga
aagaagccaaattgaatcagtcatcttggaaaggagtttgagcaggaaca
gctgagtcaaactaaccagccagagttcagaaaatgctaaaaaggataag
tttactcagcaccaaatctcagagactgaaaacattctaggccacaatag
attgaatggaggctacaagttcctaggaaaaggcccaacatagcagcagc
cagaggcagtaagtctcagagacaacaattatatcaggcgaataaagaat
aatttaagagctaatgtaactatcatttcacaaaaatcttggatatcaga
atgcctacttcaaaagttttacacaatttctaggaattggaaagttatct
caggtaaaatgaagtgtgttatgggttaagtgtgtgggacaggaagacca
aataggaaaattaaatccttatgtagttggcactaccataaatttatggg
gaaggagtctttgaaaacagaagggcactcatatgttcttgcaatcctgg
aggcagcccttgataaaataatggatgagattgtagatgcccctgggaga
ggtattgatataggtcctcaaaaacaaccataggctgtggccattgtctc
aacacagggcaaaataggaattgagtttccaaatttataaagggaccact
gctgaagtaccaacatccctacctttaaaatggttggctaacaggccatt
atgagtagatcagtggccctttaactaaggaataattgtaagcactgaag
caagagaggtctctgatctaaagatcgctattcattgaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_42205060_42206014
seq2: B6Ng01-260I23.b_46_1002 (reverse)

seq1  TCTCTA--CCCTTCACTCTCTCCCTTACATCTCTCCTCTCAGCTTTTTCC  48
      ||||||  || |||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAACCCTTTCACTCTCTCCCTTACATCTCTCCTCTCAGCTTTTTCC  50

seq1  CTCACAAGGTATCCACAAATAGGAGAAAATAGAGAGTAGTTGGACCCCTA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAGGTATCCACAAATAGGAGAAAATAGAGAGTAGTTGGACCCCTA  100

seq1  TACTTGACAATTTAAAGATAATAACCAAAAGTGTATGTATATATATATAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGACAATTTAAAGATAATAACCAAAAGTGTATGTATATATATATAT  150

seq1  ATATATATATATATATATATATATATATATATATGATTTGCAAGGGAGAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATGATTTGCAAGGGAGAG  200

seq1  AGACAAGACTAAGTTTCTATATTCAATCTTGTAATCCTTTTAAAATTGAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGACTAAGTTTCTATATTCAATCTTGTAATCCTTTTAAAATTGAT  250

seq1  CAGCTTAGGTATTTTCAGTTGTATACATAAAGACATATTAAGCTGATATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAGGTATTTTCAGTTGTATACATAAAGACATATTAAGCTGATATT  300

seq1  TTTCTTAAAACTCAAATTTCTGGAGGCAGTAGGGTGAATTCTATATAGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAAACTCAAATTTCTGGAGGCAGTAGGGTGAATTCTATATAGCA  350

seq1  TACTCCATCCATATAAAATGTCTGCACCAAGAAAAGCTGAAATAATCTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCATCCATATAAAATGTCTGCACCAAGAAAAGCTGAAATAATCTCT  400

seq1  CAGGTTGGCAAATACTAACTTATCTTATTTTTATATTATCTACTAATAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGGCAAATACTAACTTATCTTATTTTTATATTATCTACTAATAAT  450

seq1  TTATTAGATTAACAGTCTAAAATTTGATGCTGCGTATGTTCACTATACAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGATTAACAGTCTAAAATTTGATGCTGCGTATGTTCACTATACAT  500

seq1  AAAACATTCTAATTTCCATGGAGAATCCTCTATGCCATAGGTACTATGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTCTAATTTCCATGGAGAATCCTCTATGCCATAGGTACTATGTT  550

seq1  ATTTCATACACTCAGATGCTTTTTCTGTATAATGTTATATATGCATATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATACACTCAGATGCTTTTTCTGTATAATGTTATATATGCATATAT  600

seq1  TTGTCATAATGTTCTCCATGAATTTCCTCTGAAAATGATCATAAAGTCTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATAATGTTCTCCATGAATTTCCTCTGAAAATGATCATAAAGTCTA  650

seq1  ATGATTATATTTTAATGATTTGTAAGGATCTGATGTTCTGCCAGCCAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTATATTTTAATGATTTGTAAGGATCTGATGTTCTGCCAGCCAGAA  700

seq1  ATATCTTAGAGCATTTCATTTGACATCGTTGTTAGTATTTTTCACAAACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTAGAGCATTTCATTTGACATCGTTGTTAGTATTTTTCACAAACT  750

seq1  GTTCCTGTGTAAAGGCTTCAAACATGGGATCCATGCAAATATAAAAGTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGTGTAAAGGCTTCAAACATGGGATCCATGCAAATATAAAAGTAT  800

seq1  ACAAGAACTTAAAATAGTAAGATTTAGTGGTCTTTTTTCACTTCTATCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAACTTAAAATAGTAAGATTTAGTGGTCTTTTTTCACTTCTATCAT  850

seq1  TTTATGAATCCATTTTGATCAACTTTGGTACAGTATGAACATGAGACTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAATCCATTTTGATCAACTTTGGTACAGTATGAACATGAGACTAA  900

seq1  TTTAGAAAATCTCTCAACTACACAACCTTCAAATAGCAGTGCCTCTTTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAATCTCTCAACTACACAACCTTCAAATAGCAGTGCCTCTTTGT  950

seq1  GGAATTC  955
      |||||||
seq2  GGAATTC  957


seq1: chr11_42073275_42073956
seq2: B6Ng01-260I23.g_65_746

seq1  GAATTCACAGCTCTTTATGCAGTTCATATATAACATTAAGGGAGACACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCTCTTTATGCAGTTCATATATAACATTAAGGGAGACACTC  50

seq1  ATAGTGATGTGTGCTGAAACAGATGTCAGCGAATCCAGCATCAATTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGATGTGTGCTGAAACAGATGTCAGCGAATCCAGCATCAATTCACT  100

seq1  GACATGCATTCCAGTCGGGCCAAGGTCTAACACCGTGCTCTTCTCTCCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCATTCCAGTCGGGCCAAGGTCTAACACCGTGCTCTTCTCTCCCG  150

seq1  TATGGCTCATGTTGAATTCAAATCTAGGTTTTCAAAGTCAGAGGCTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTCATGTTGAATTCAAATCTAGGTTTTCAAAGTCAGAGGCTAAGA  200

seq1  AAGAAGCCAAATTGAATCAGTCATCTTGGAAAGGAGTTTGAGCAGGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCCAAATTGAATCAGTCATCTTGGAAAGGAGTTTGAGCAGGAACA  250

seq1  GCTGAGTCAAACTAACCAGCCAGAGTTCAGAAAATGCTAAAAAGGATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTCAAACTAACCAGCCAGAGTTCAGAAAATGCTAAAAAGGATAAG  300

seq1  TTTACTCAGCACCAAATCTCAGAGACTGAAAACATTCTAGGCCACAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCAGCACCAAATCTCAGAGACTGAAAACATTCTAGGCCACAATAG  350

seq1  ATTGAATGGAGGCTACAAGTTCCTAGGAAAAGGCCCAACATAGCAGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATGGAGGCTACAAGTTCCTAGGAAAAGGCCCAACATAGCAGCAGC  400

seq1  CAGAGGCAGTAAGTCTCAGAGACAACAATTATATCAGGCGAATAAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGTAAGTCTCAGAGACAACAATTATATCAGGCGAATAAAGAAT  450

seq1  AATTTAAGAGCTAATGTAACTATCATTTCACAAAAATCTTGGATATCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGAGCTAATGTAACTATCATTTCACAAAAATCTTGGATATCAGA  500

seq1  ATGCCTACTTCAAAAGTTTTACACAATTTCTAGGAATTGGAAAGTTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTACTTCAAAAGTTTTACACAATTTCTAGGAATTGGAAAGTTATCT  550

seq1  CAGGTAAAATGAAGTGTGTTATGGGTTAAGTGTGTGGGACAGGAAGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAAATGAAGTGTGTTATGGGTTAAGTGTGTGGGACAGGAAGACCA  600

seq1  AATAGGAAAATTAAATCCTTATGTAGTTGGCACTACCATAAATTTATGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAAATTAAATCCTTATGTAGTTGGCACTACCATAAATTTATGGG  650

seq1  GAAGGAGTCTTTGAAAACAGAAGGGCACTCAT  682
      ||||||||||||||||||||||||||||||||
seq2  GAAGGAGTCTTTGAAAACAGAAGGGCACTCAT  682


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