BAC Information

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BAC

Clone NameB6Ng01-260L17
Chromosome11 (Build37)
Map Location 79,996,290 - 80,177,340
singlet/doubletdoublet
Overlap geneRnf135, Rhot1, Rhbdl3, 5730455P16Rik
Upstream geneLOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2
Downstream geneZfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3, Accn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260L17.bB6Ng01-260L17.g
ACCGA065581GA065582
length9471,188
definitionB6Ng01-260L17.b B6Ng01-260L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,996,290 - 79,997,234)(80,176,153 - 80,177,340)
sequence
gaattcaggacctctggaagagtagttggttattttttttttaaagattt
atttatttattatatgtaagtaaactgcagctatcttcagacacaccaga
agaaggcatcagatcccattatggatggttgtgagccaccctgtggttgc
tgggcattgaactcgggactttggaagagcaatcagtgctcttaactgct
gagccatctctccagccctgatttacttatttttttttctttttccattt
ttttttttttttggttttgttttgttttgtttttcgagacagggtttctc
tgtatagccctggctgtcctggaactcactttgtagaccaggctggcctc
gaactcagaaatccgcctgccttaaaggcgtgctccaccacgcctggctt
ccaattttttgttaggtattttcttcatttacatttcaaatgctatcccg
aaagtctcctataccctccccccagatttacttatttttaagaagagcaa
ataaagactgaggctgtcttttttttttttttttttttttttaattaatt
atatgtaagtacactgtagctgtcttcagacacacctgaagagggcatca
gatctcattacgggtggttgtgagccaccatgtggttgctgggatttgaa
cttcagaccttcggaagagcagttgggtgctcttacccactgaaccatct
caccagcccctgaggctgtcttttaatgtcatttaatgcatatgagtaca
ctgtagctgtcttcggacacaccagaagagggcattagatcccatttttg
ttgctacttcataactgtaattttgatactcttatgattctaaaatgagt
tcctgaagcgggaccttcttcataagcttaagttgttggggttgcgtgtt
tgtggctaggcgagcaggaccaactactagagagagaatgatttttc
gaattcatgagagaagcgcttgtctgaagttccagtcccgtgttgaggat
ctgtttcatggagtgtattgaggctgcatgtgggggctgtaattaccatt
gtttataggattgcactgccctaagatgactggaaacaccccagcttctt
ccttttgtgctttttttgtttaatttaattaaacacaacaatcagaggaa
tgtcttcaccaggtcctaggcagacgctgtgttacagctggggaattttg
ctgtctcataaatcctaagcacgtgctgcctaaagagctctggagatgag
ttttggcttcttgggagtttaccgtagtgtttagcaggatttcctcctcc
aaaagaaacatagtatgcctttctcagtacaatgtagaagtttgtaaagt
acatgatcctagcaagatgtgatgacacatgcctataatcccagctactc
aggaggttgaggcaggaggttgtgaggttccaggccagcctgagctactg
agtaagtttatgtccagcttggactacagggcagtcatcaccttcctggt
cttactgcaccatcagctcgcttcattgacagcctgttcatcctctgagt
gcctgatacaaaccaatgggcaggaatgacgaagccaccttttgaagcga
atatacacacgaattatgagtgtataagcacttaaaaatgagctttatgt
atagaaacttgtgggctggcaaggtggctcagaaggtaaagaaacctgcc
accaagtctgacaacctatgttcaatccccaaactcacttggtaggagag
aaccaactccacaagttgcctctgacccatacagagctacatactcaata
aataaatacatgaagatatggtgggctggagaggcagctcagcagttaag
agcattgttgctcttggagaggagcccggcaccttacttggtggctcaat
ttcaggggatttgacaccctgttctgacctcctcaagcgtcaggcacaca
tgttagtgtatagatatacatgcagacaaaaaatacacataaattatcta
aaatcagttaagaaaagaaaagaaagaggagagagagaggaaacggtgat
acttagcttcagaatgaacatttctctctggacttaaagctctttgtgca
atacacagtgtattaatggccagagacctgtatttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_79996290_79997234
seq2: B6Ng01-260L17.b_47_993

seq1  GAATTCAGGACCTCTGGAAGAGTAGTTGGTTATTTTTTTTTTAAAGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTCTGGAAGAGTAGTTGGTTATTTTTTTTTTAAAGATTT  50

seq1  ATTTATTTATTATATGTAAGTAAACTGCAGCTATCTTCAGACACACCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTATATGTAAGTAAACTGCAGCTATCTTCAGACACACCAGA  100

seq1  AGAAGGCATCAGATCCCATTATGGATGGTTGTGAGCCACCCTGTGGTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCATCAGATCCCATTATGGATGGTTGTGAGCCACCCTGTGGTTGC  150

seq1  TGGGCATTGAACTCGGGACTTTGGAAGAGCAATCAGTGCTCTTAACTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATTGAACTCGGGACTTTGGAAGAGCAATCAGTGCTCTTAACTGCT  200

seq1  GAGCCATCTCTCCAGCCCTGATTTACTTATTTTTTTTTCTTTTTCCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTCTCCAGCCCTGATTTACTTATTTTTTTTTCTTTTTCCATTT  250

seq1  TTTTTTTTTTTTGGTTTTGTTTTGTTTTGTTTTTCGAGACAGGGTTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGGTTTTGTTTTGTTTTGTTTTTCGAGACAGGGTTTCTC  300

seq1  TGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTC  350

seq1  GAACTCAGAAATCCGCCTGCCTTAAAGGCGTGCTCCACCACGCCTGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAAATCCGCCTGCCTTAAAGGCGTGCTCCACCACGCCTGGCTT  400

seq1  CCAATTTTTTGTTAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTTTGTTAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCG  450

seq1  AAAGTCTCCTATACCCTCCCCCCAGATTTACTTATTTTTAAGAAGAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTCCTATACCCTCCCCCCAGATTTACTTATTTTTAAGAAGAGCAA  500

seq1  ATAAAGACTGAGGCTGTCTTTTTTTTTTTTTTTTTTTTTTTTAATTAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACTGAGGCTGTCTTTTTTTTTTTTTTTTTTTTTTTTAATTAATT  550

seq1  ATATGTAAGTACACTGTAGCTGTCTTCAGACACACCTGAAGAGGGCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAGTACACTGTAGCTGTCTTCAGACACACCTGAAGAGGGCATCA  600

seq1  GATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAA  650

seq1  CTTCAGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCCACTGAACCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCCACTGAACCATCT  700

seq1  CACCAGCCCCTGAGGCTGTCTTTTAATGTCATTTAATGCATATGAGTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCCCTGAGGCTGTCTTTTAATGTCATTTAATGCATATGAGTACA  750

seq1  CTGTAGCTGTCTTCGGACACACCAGAAGAGGGCATTAGATCCCATTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTGTCTTCGGACACACCAGAAGAGGGCATTAGATCCCATTTTTG  800

seq1  TTGCTACTTCATAACTGTAATTTTGATACTCTTATGATTCTAAAATGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACTTCATAACTGTAATTTTGATACTCTTATGATTCTAAAATGAGT  850

seq1  TCCTGAAGC-GGACCTTCTTCAT-AGCTTAAGTTGTTGGGGTTGCGTGTT  898
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  TCCTGAAGCGGGACCTTCTTCATAAGCTTAAGTTGTTGGGGTTGCGTGTT  900

seq1  TGTGGCTAGGCGAGCAGGACCCAACTACTAGAGAGAG-ATGATTTTTC  945
      ||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  TGTGGCTAGGCGAGCAGGA-CCAACTACTAGAGAGAGAATGATTTTTC  947

seq1: chr11_80176153_80177340
seq2: B6Ng01-260L17.g_65_1252 (reverse)

seq1  AAAAAATACAGGCTCCTGGCAAATAAATACCTATTGTGTAAATTGCCACA  50
      ||||||||||||   |||||  || |||||  | |||||  |||||   |
seq2  AAAAAATACAGGTCTCTGGC-CATTAATAC--ACTGTGT--ATTGCACAA  45

seq1  AGAGCTTTTTAGT-CAGAGAGAATGTTTCATCTTGAAGCT-AGTAT-ACC  97
      ||||| ||| ||| |||||||||   |||||  ||||||| ||||| |||
seq2  AGAGC-TTTAAGTCCAGAGAGAAATGTTCATTCTGAAGCTAAGTATCACC  94

seq1  CTTTCTTCTCTCTCTTCCTCTTTCTTTTC-TTTCTT-ACTGGTTTTAGAT  145
       |||| |||||||| |||||||||||||| |||||| |||| ||||||| 
seq2  GTTTCCTCTCTCTC-TCCTCTTTCTTTTCTTTTCTTAACTGATTTTAGA-  142

seq1  TATTTTATGTGTATGTTTTGTCTGCATGTATATCTATACACT-ACATGTG  194
      || ||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  TAATTTATGTGTATTTTTTGTCTGCATGTATATCTATACACTAACATGTG  192

seq1  TGCCTGACGCTTGAGGAGGTCAGAACAGGGTGTCAAATCCCCTGAAATTG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGACGCTTGAGGAGGTCAGAACAGGGTGTCAAATCCCCTGAAATTG  242

seq1  AGCCACCAGGT-AGGTGCC-GGCTCCTCTCCAAGAGCAACAATGCTCTTA  292
      |||||||| || ||||||| ||||||||||||||||||||||||||||||
seq2  AGCCACCAAGTAAGGTGCCGGGCTCCTCTCCAAGAGCAACAATGCTCTTA  292

seq1  ACTGCTGAGCTGCCTCTCCAGCCCACCATATCTTCATGTATTTATTTATT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAGCTGCCTCTCCAGCCCACCATATCTTCATGTATTTATTTATT  342

seq1  GAGTATGTAGCTCTGTATGGGTCAGAGGCAACTTGTGGAGTTGGTTCTCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGTAGCTCTGTATGGGTCAGAGGCAACTTGTGGAGTTGGTTCTCT  392

seq1  CCTACCAAGTGAGTTTGGGGATTGAACATAGGTTGTCAGACTTGGTGGCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAAGTGAGTTTGGGGATTGAACATAGGTTGTCAGACTTGGTGGCA  442

seq1  GGTTTCTTTACCTTCTGAGCCACCTTGCCAGCCCACAAGTTTCTATACAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTTACCTTCTGAGCCACCTTGCCAGCCCACAAGTTTCTATACAT  492

seq1  AAAGCTCATTTTTAAGTGCTTATACACTCATAATTCGTGTGTATATTCGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCATTTTTAAGTGCTTATACACTCATAATTCGTGTGTATATTCGC  542

seq1  TTCAAAAGGTGGCTTCGTCATTCCTGCCCATTGGTTTGTATCAGGCACTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGGTGGCTTCGTCATTCCTGCCCATTGGTTTGTATCAGGCACTC  592

seq1  AGAGGATGAACAGGCTGTCAATGAAGCGAGCTGATGGTGCAGTAAGACCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATGAACAGGCTGTCAATGAAGCGAGCTGATGGTGCAGTAAGACCA  642

seq1  GGAAGGTGATGACTGCCCTGTAGTCCAAGCTGGACATAAACTTACTCAGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTGATGACTGCCCTGTAGTCCAAGCTGGACATAAACTTACTCAGT  692

seq1  AGCTCAGGCTGGCCTGGAACCTCACAACCTCCTGCCTCAACCTCCTGAGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGCTGGCCTGGAACCTCACAACCTCCTGCCTCAACCTCCTGAGT  742

seq1  AGCTGGGATTATAGGCATGTGTCATCACATCTTGCTAGGATCATGTACTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGATTATAGGCATGTGTCATCACATCTTGCTAGGATCATGTACTT  792

seq1  TACAAACTTCTACATTGTACTGAGAAAGGCATACTATGTTTCTTTTGGAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACTTCTACATTGTACTGAGAAAGGCATACTATGTTTCTTTTGGAG  842

seq1  GAGGAAATCCTGCTAAACACTACGGTAAACTCCCAAGAAGCCAAAACTCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATCCTGCTAAACACTACGGTAAACTCCCAAGAAGCCAAAACTCA  892

seq1  TCTCCAGAGCTCTTTAGGCAGCACGTGCTTAGGATTTATGAGACAGCAAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAGCTCTTTAGGCAGCACGTGCTTAGGATTTATGAGACAGCAAA  942

seq1  ATTCCCCAGCTGTAACACAGCGTCTGCCTAGGACCTGGTGAAGACATTCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCAGCTGTAACACAGCGTCTGCCTAGGACCTGGTGAAGACATTCC  992

seq1  TCTGATTGTTGTGTTTAATTAAATTAAACAAAAAAAGCACAAAAGGAAGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTGTTGTGTTTAATTAAATTAAACAAAAAAAGCACAAAAGGAAGA  1042

seq1  AGCTGGGGTGTTTCCAGTCATCTTAGGGCAGTGCAATCCTATAAACAATG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGGTGTTTCCAGTCATCTTAGGGCAGTGCAATCCTATAAACAATG  1092

seq1  GTAATTACAGCCCCCACATGCAGCCTCAATACACTCCATGAAACAGATCC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTACAGCCCCCACATGCAGCCTCAATACACTCCATGAAACAGATCC  1142

seq1  TCAACACGGGACTGGAACTTCAGACAAGCGCTTCTCTCATGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACGGGACTGGAACTTCAGACAAGCGCTTCTCTCATGAATTC  1188