BAC Information

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BAC

Clone NameB6Ng01-261C11
Chromosome11 (Build37)
Map Location 120,040,079 - 120,040,952
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik
Downstream gene2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261C11.bB6Ng01-261C11.g
ACCGA065893GA065894
length1,233886
definitionB6Ng01-261C11.b B6Ng01-261C11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccctttatatccctcacagagcgacactggtcggctctatga
taacccttgccacacttagagcaaagagtgagagtccccccctgtttatc
tggagctctgcaatctttcttaaaatgtccaggctttccgcaattaaaac
atgtcctctgatcatttctgctcatggagcggttctgagattggaggatg
gcggccgctaaacctgcattgctgagaggtcccccaagctctcgacagac
cctgagccagtcttgtaagcctttgttctttcttggggctatggccgctc
ggcactcctttgtggcttgctcatagattagctgttctaccagaggcgcg
gcttgctctgaatctccaaaaatacgctctgctgcctctgtcattctggc
cacaaaatctgagaaggactcctgaggtccctggacaacttttgttaatt
gaccagtggtttcacctgctcgggagagcgccttccaggccctaatagcc
gtggaggaaacttgggcataagctccccaatggtagtttgtttgatcagc
agaataagctccctgacccgttaacaagtcaaaagtccaatctctctgct
ctggagtcaaagcagctgcgtttgctcgggcctgcgcttgtgcagtttca
tgccaaagagctctccattccatatatttgcccatactagggagagcggc
ttttacaaccgtttgccagtcggcaggagttagtgccatgccggcaagcc
tgtctaactgcaccaaggtaaaattagcattggttccatatttacggacc
gactcggcaagttctttaatttgtaagtattctaccggagcgtggacacg
cccaccctcggctccttcaaagactggaaatgccagttgtattttccttt
gttcctctctgggaatgaatgagtctgcgcactgcctctctgcgcactgc
ctctctgcgcactgcctctctgcgcatctctctgcgcattgcctctctgc
gcatctctctgcgcatgcctcctctgcgcatctcctctgcgcattgcctc
ctctgcgcattgctgacgcactacgccaggcgggggcctccgcatagcgg
accttgagccgacttcctgagcaatcagcaactgccctcccccagccgct
tggctccttactgatagctagacttaactgctgtaactttttctaataga
cgtcttcttcctctccagactggtttctctcga
gaattcagctctgctttccccaactgtcacctcgcagtggccatagcaac
tatttccacggctgaggtttggcttgttcatcatgaaacacaatgtcagc
aaaatggactggtcagcccaagtggctgctgggtgagcaggagctcccat
acttggcccagcaggcaggtgccaatgtgtggggtggcagacaggctctg
ggactttgatgactggcagtgtctccacctctgtgtgcctggggatacgg
agatggaggtgtaggtgagagttacccacatcctctccccatgtccctat
gcttcatagcaggcagactttgggggtactgtcatcctcgggcatagtat
ctagattcccgacatgaaaactttccaatctttgaattgggaataattgt
aataaacagatggtcccaggctaatgttgatttgacctaagaattttgtc
ttctgctaggcggtggtggtgcacacctttgatcccagcactcaggagac
agaggcacatgagtctctcagttcgaggccagcctgatctccagagtaag
ttctaggacagccaggctacacagaaaaatcctgtcccaaaaactcgaaa
agaagaagaaagaggattttgtctttctttgctggtgtgaaaagtgtgac
acattcagaagctgcactttgtatttttgaccttttccctgacttttgct
aagaggtctaaatcctgaggactggagaggtggctcagtggttaagagaa
tttactgctcttacggataatgctagttcagtttccagcacccacggtgg
cagctcacaactgtaacccccatctggtctctctagtttccaatgccctt
aggatctgctgacttcagaagcccccggttgcttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120040079_120040952
seq2: B6Ng01-261C11.g_64_949

seq1  GAATTCAGCTCTGCTTTCCCCAACTGTCACCTCGCAGTGGCCATAGCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCTGCTTTCCCCAACTGTCACCTCGCAGTGGCCATAGCAAC  50

seq1  TATTTCCACGGCTGAGGTTTGGCTTGTTCATCATGAAACACAATGTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCACGGCTGAGGTTTGGCTTGTTCATCATGAAACACAATGTCAGC  100

seq1  AAAATGGACTGGTCAGCCCAAGTGGCTGCTGGGTGAGCAGGAGCTCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGACTGGTCAGCCCAAGTGGCTGCTGGGTGAGCAGGAGCTCCCAT  150

seq1  ACTTGGCCCAGCAGGCAGGTGCCAATGTGTGGGGTGGCAGACAGGCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCCCAGCAGGCAGGTGCCAATGTGTGGGGTGGCAGACAGGCTCTG  200

seq1  GGACTTTGATGACTGGCAGTGTCTCCACCTCTGTGTGCCTGGGGATACGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGATGACTGGCAGTGTCTCCACCTCTGTGTGCCTGGGGATACGG  250

seq1  AGATGGAGGTGTAGGTGAGAGTTACCCACATCCTCTCCCCATGTCCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGGTGTAGGTGAGAGTTACCCACATCCTCTCCCCATGTCCCTAT  300

seq1  GCTTCATAGCAGGCAGACTTTGGGGGTACTGTCATCCTCGGGCATAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATAGCAGGCAGACTTTGGGGGTACTGTCATCCTCGGGCATAGTAT  350

seq1  CTAGATTCCCGACATGAAAACTTTCCAATCTTTGAATTGGGAATAATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTCCCGACATGAAAACTTTCCAATCTTTGAATTGGGAATAATTGT  400

seq1  AATAAACAGATGGTCCCAGGCTAATGTTGATTTGACCTAAGAATTTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAGATGGTCCCAGGCTAATGTTGATTTGACCTAAGAATTTTGTC  450

seq1  TTCTGCTAGGCGGTGGTGGTGCACACCTTTGATCCCAGCACTCAGGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTAGGCGGTGGTGGTGCACACCTTTGATCCCAGCACTCAGGAGAC  500

seq1  AGAGGCACATGAGTCTCTCAGTTCGAGGCCAGCCTGATCTCCAGAGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCACATGAGTCTCTCAGTTCGAGGCCAGCCTGATCTCCAGAGTAAG  550

seq1  TTCTAGGACAGCCAGGCTACACAGAAAAATCCTGTCCCAAAAACTCGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGACAGCCAGGCTACACAGAAAAATCCTGTCCCAAAAACTCGAAA  600

seq1  AGAAGAAGAAAGAGGATTTTGTCTT--CTTGCTGGTGTG-AAAGTGTGAC  647
      |||||||||||||||||||||||||   ||||||||||| ||||||||||
seq2  AGAAGAAGAAAGAGGATTTTGTCTTTCTTTGCTGGTGTGAAAAGTGTGAC  650

seq1  ACATTCAGAAGCTGCACTTTG-AATTTTGACC-TTTCCCTGACTTTTGCT  695
      ||||||||||||||||||||| | |||||||| |||||||||||||||||
seq2  ACATTCAGAAGCTGCACTTTGTATTTTTGACCTTTTCCCTGACTTTTGCT  700

seq1  AAGAGGTCT-AATCCTGAGGACTGGAGAGGTGGCTCAGTGGTTAAGAGAA  744
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTCTAAATCCTGAGGACTGGAGAGGTGGCTCAGTGGTTAAGAGAA  750

seq1  TTTACTGCTCTTACGGAGAATGCTAGTTCAGTTTCCAGCACCCAC-GTGG  793
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  TTTACTGCTCTTACGGATAATGCTAGTTCAGTTTCCAGCACCCACGGTGG  800

seq1  CAGCTCACAACTGTAA-CCCCATCT-GTCGCTCCAGTTTCCCAAGCCC-T  840
      |||||||||||||||| |||||||| ||| ||| ||||||| | |||| |
seq2  CAGCTCACAACTGTAACCCCCATCTGGTCTCTCTAGTTTCCAATGCCCTT  850

seq1  AGGATCTGCTGAC-TCAGGAGCCCCCGG-TGCTTCA  874
      ||||||||||||| |||| ||||||||| |||||||
seq2  AGGATCTGCTGACTTCAGAAGCCCCCGGTTGCTTCA  886