BAC Information

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BAC

Clone NameB6Ng01-261M05
Chromosome11 (Build37)
Map Location 45,329,133 - 45,494,742
singlet/doubletdoublet
Overlap genenone
Upstream gene3732413I11Rik, Ebf1, LOC382510
Downstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261M05.bB6Ng01-261M05.g
ACCGA066351GA066352
length1,154952
definitionB6Ng01-261M05.b B6Ng01-261M05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,493,579 - 45,494,742)(45,329,133 - 45,329,941)
sequence
gaattccatcttcagtccttgtagttctattacattatgaacatttttat
tatcttattttattcttccaacataggagatggtaggaaaacaatatcat
atagtccatttatcaataataaaaaaaagaaggctagaaagtctaacctt
ctcagccagtatcatatgtaaggaaagggtggaggcggaatttaagtcca
atttttcctgactccaaatgtcatctccctaattaccattccatccttcc
tttccatcctttaatatactaactgagaagacgtgaggtcaccaaagccc
tggatttctgttcctgtgtgggtgggtgagccaaaccactgggaatgtgg
gaagaaaccagagaagcctttgccttctgcaatctatttatcttttccca
cacagtggagttctgcagaatcctaataccaaggctttgctaataaacgc
cagcagatgtacagatttagcttacgctttgctagactagagcctctgag
aaacgttctggtctcaaacacctagaaggagataggtgcatgattcatct
tcaagctgcgatggatggtacacatggagccacctgagcctcttctttgt
attgtgggtactcaatgtggatttcattcagcacttataggtcattcact
caactccaggcactgtttaaagtgcctcagatatactgggttttcttgcc
taatcctctcaagtgaccccacagggtagacgtccaagcacagcaagatg
aagtcacagtgtcacacaggtggccactagaacttctaagatttgaaccc
aaacttgctttgtcacggaacgtaaacgtgttatctgctaaggatccaag
ccatcactggcaagtcatacattgttgagtgacgcttaactcttcctctg
cttgtaaaacataaaagtatatgacctctgcctaatgtgaacctctccag
cccctaacatttgaaaggaatctgtttttgagttagctggactgcctatc
tgatggacaatgatctctttcaactgaccatgaaatccataatgtgtaaa
ttctgctgcacactcaaggcagatgatattctacttcaattacagggtaa
acataaattcaattgtatgggtctgtctctctcctaggtgtattttggca
tgtg
gaattctttttcttttcattctagaaagctgttatggaaggcaacgcttt
ccaagtgaaacttggcacaatttaaaagtttcatttgggttcatctgttt
attttctttgtctataaacagcccgagactttcatcaaaataatttaaaa
agtgagaatcaggttgaaattgtctttttttttctggtctgaaggaaaga
agtggcacccttatccccaaagacaggcttctaaataggtcattagtgtc
agtcaccggccagtcattggaggactctaaaaagaaagggttacagaaga
tggatataattgtgagtcttaaaaatatatacatctgagtgttcaagcta
acatcctcaaatatgagaaaagatgcaacatctgcctttctgggtctgag
ttatttcactcaatatgattgtttccagctccatccatttccctgaaatt
ttcataatttcatttttataatagcgggataataattgcataaatagacc
acattctcaccatacattcatcagctgatagacaccctgcctgttgtgaa
cagaatggcaagagcagagttgagtaagtatccctgtagtaggatgtaca
ttctttggggtttgtattcacgcgtatacagctggatcatgtaattgatt
tatgtgtagtgttttgaagaacagcacactgatttccatggtggctgcac
cagtttgcccttccaccagcagtaagtgttcctctttgccacatccatac
cagcatttgtccatcagcagagaatacgtcactctagagtgctcatccct
aaatggaacatctgcatcacatcccttcctcccaaagcacagggatcgat
gtgaaggagggggcagaaagactgtgagagccagaggtagtggataacta
caaggaaaccgtgctttactggacacagcaggactggtgcacagacaact
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_45493579_45494742
seq2: B6Ng01-261M05.b_45_1198 (reverse)

seq1  CACATGCACAAATACACACAGAGAGAGAGACAGACACATTACAAATAGAA  50
      |||||||  ||||||||  || ||||||||||||| || ||| ||| |||
seq2  CACATGCCAAAATACACCTAG-GAGAGAGACAGACCCA-TAC-AATTGAA  47

seq1  TATTATGTTTACCCTGTAAATAGAAGTAGAATATACATTCTGCCTGGAGT  100
      | ||||||||||||||| ||| |||||||||||| || ||||||| ||||
seq2  T-TTATGTTTACCCTGT-AATTGAAGTAGAATAT-CA-TCTGCCTTGAGT  93

seq1  GTGCAGGCAGAATTTACAACATAATGGA-TTCATGGGTCAG-TGAAAGAG  148
      ||||| ||||||||||| |||| ||||| ||||| |||||| ||||||||
seq2  GTGCA-GCAGAATTTAC-ACATTATGGATTTCAT-GGTCAGTTGAAAGAG  140

seq1  ATCATTGTCCATCAGATAAGGCAGTCCAGCTAACTCAAAAACAGATTCCT  198
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATCATTGTCCATCAGAT-AGGCAGTCCAGCTAACTCAAAAACAGATTCCT  189

seq1  TTCAAATGTTAGGGGCTGGAGAGGTTCACATTAGGCAGAGGTCATATACT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCAAATGTTAGGGGCTGGAGAGGTTCACATTAGGCAGAGGTCATATAC-  238

seq1  TTTTATGTTTTACAAGCAGAGGAAGAGTTAAGCGTCACTCAACAATGTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTTTTACAAGCAGAGGAAGAGTTAAGCGTCACTCAACAATGTAT  288

seq1  GACTTGCCAGTGATGGCTTGGATCCTTAGCAGATAACACGTTTACGTTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCCAGTGATGGCTTGGATCCTTAGCAGATAACACGTTTACGTTCC  338

seq1  GTGACAAAGCAAGTTTGGGTTCAAATCTTAGAAGTTCTAGTGGCCACCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAAGCAAGTTTGGGTTCAAATCTTAGAAGTTCTAGTGGCCACCTG  388

seq1  TGTGACACTGTGACTTCATCTTGCTGTGCTTGGACGTCTACCCTGTGGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACACTGTGACTTCATCTTGCTGTGCTTGGACGTCTACCCTGTGGGG  438

seq1  TCACTTGAGAGGATTAGGCAAGAAAACCCAGTATATCTGAGGCACTTTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGAGAGGATTAGGCAAGAAAACCCAGTATATCTGAGGCACTTTAA  488

seq1  ACAGTGCCTGGAGTTGAGTGAATGACCTATAAGTGCTGAATGAAATCCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCCTGGAGTTGAGTGAATGACCTATAAGTGCTGAATGAAATCCAC  538

seq1  ATTGAGTACCCACAATACAAAGAAGAGGCTCAGGTGGCTCCATGTGTACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTACCCACAATACAAAGAAGAGGCTCAGGTGGCTCCATGTGTACC  588

seq1  ATCCATCGCAGCTTGAAGATGAATCATGCACCTATCTCCTTCTAGGTGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCGCAGCTTGAAGATGAATCATGCACCTATCTCCTTCTAGGTGTT  638

seq1  TGAGACCAGAACGTTTCTCAGAGGCTCTAGTCTAGCAAAGCGTAAGCTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCAGAACGTTTCTCAGAGGCTCTAGTCTAGCAAAGCGTAAGCTAA  688

seq1  ATCTGTACATCTGCTGGCGTTTATTAGCAAAGCCTTGGTATTAGGATTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTACATCTGCTGGCGTTTATTAGCAAAGCCTTGGTATTAGGATTCT  738

seq1  GCAGAACTCCACTGTGTGGGAAAAGATAAATAGATTGCAGAAGGCAAAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACTCCACTGTGTGGGAAAAGATAAATAGATTGCAGAAGGCAAAGG  788

seq1  CTTCTCTGGTTTCTTCCCACATTCCCAGTGGTTTGGCTCACCCACCCACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGGTTTCTTCCCACATTCCCAGTGGTTTGGCTCACCCACCCACA  838

seq1  CAGGAACAGAAATCCAGGGCTTTGGTGACCTCACGTCTTCTCAGTTAGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACAGAAATCCAGGGCTTTGGTGACCTCACGTCTTCTCAGTTAGTA  888

seq1  TATTAAAGGATGGAAAGGAAGGATGGAATGGTAATTAGGGAGATGACATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGGATGGAAAGGAAGGATGGAATGGTAATTAGGGAGATGACATT  938

seq1  TGGAGTCAGGAAAAATTGGACTTAAATTCCGCCTCCACCCTTTCCTTACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCAGGAAAAATTGGACTTAAATTCCGCCTCCACCCTTTCCTTACA  988

seq1  TATGATACTGGCTGAGAAGGTTAGACTTTCTAGCCTTCTTTTTTTTATTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATACTGGCTGAGAAGGTTAGACTTTCTAGCCTTCTTTTTTTTATTA  1038

seq1  TTGATAAATGGACTATATGATATTGTTTTCCTACCATCTCCTATGTTGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAATGGACTATATGATATTGTTTTCCTACCATCTCCTATGTTGGA  1088

seq1  AGAATAAAATAAGATAATAAAAATGTTCATAATGTAATAGAACTACAAGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAATAAGATAATAAAAATGTTCATAATGTAATAGAACTACAAGG  1138

seq1  ACTGAAGATGGAATTC  1164
      ||||||||||||||||
seq2  ACTGAAGATGGAATTC  1154

seq1: chr11_45329133_45329941
seq2: B6Ng01-261M05.g_67_875

seq1  GAATTCTTTTTCTTTTCATTCTAGAAAGCTGTTATGGAAGGCAACGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCTTTTCATTCTAGAAAGCTGTTATGGAAGGCAACGCTTT  50

seq1  CCAAGTGAAACTTGGCACAATTTAAAAGTTTCATTTGGGTTCATCTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGAAACTTGGCACAATTTAAAAGTTTCATTTGGGTTCATCTGTTT  100

seq1  ATTTTCTTTGTCTATAAACAGCCCGAGACTTTCATCAAAATAATTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTGTCTATAAACAGCCCGAGACTTTCATCAAAATAATTTAAAA  150

seq1  AGTGAGAATCAGGTTGAAATTGTCTTTTTTTTTCTGGTCTGAAGGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAATCAGGTTGAAATTGTCTTTTTTTTTCTGGTCTGAAGGAAAGA  200

seq1  AGTGGCACCCTTATCCCCAAAGACAGGCTTCTAAATAGGTCATTAGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCACCCTTATCCCCAAAGACAGGCTTCTAAATAGGTCATTAGTGTC  250

seq1  AGTCACCGGCCAGTCATTGGAGGACTCTAAAAAGAAAGGGTTACAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCGGCCAGTCATTGGAGGACTCTAAAAAGAAAGGGTTACAGAAGA  300

seq1  TGGATATAATTGTGAGTCTTAAAAATATATACATCTGAGTGTTCAAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATAATTGTGAGTCTTAAAAATATATACATCTGAGTGTTCAAGCTA  350

seq1  ACATCCTCAAATATGAGAAAAGATGCAACATCTGCCTTTCTGGGTCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTCAAATATGAGAAAAGATGCAACATCTGCCTTTCTGGGTCTGAG  400

seq1  TTATTTCACTCAATATGATTGTTTCCAGCTCCATCCATTTCCCTGAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCACTCAATATGATTGTTTCCAGCTCCATCCATTTCCCTGAAATT  450

seq1  TTCATAATTTCATTTTTATAATAGCGGGATAATAATTGCATAAATAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATTTCATTTTTATAATAGCGGGATAATAATTGCATAAATAGACC  500

seq1  ACATTCTCACCATACATTCATCAGCTGATAGACACCCTGCCTGTTGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCACCATACATTCATCAGCTGATAGACACCCTGCCTGTTGTGAA  550

seq1  CAGAATGGCAAGAGCAGAGTTGAGTAAGTATCCCTGTAGTAGGATGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGCAAGAGCAGAGTTGAGTAAGTATCCCTGTAGTAGGATGTACA  600

seq1  TTCTTTGGGGTTTGTATTCACGCGTATACAGCTGGATCATGTAATTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGGGTTTGTATTCACGCGTATACAGCTGGATCATGTAATTGATT  650

seq1  TATGTGTAGTGTTTTGAAGAACAGCACACTGATTTCCATGGTGGCTGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTAGTGTTTTGAAGAACAGCACACTGATTTCCATGGTGGCTGCAC  700

seq1  CAGTTTGCCCTTCCACCAGCAGTAAGTGTTCCTCTTTGCCACATCCATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGCCCTTCCACCAGCAGTAAGTGTTCCTCTTTGCCACATCCATAC  750

seq1  CAGCATTTGTCCATCAGCAGAGAATACGTCACTCTAGAGTGCTCATCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTGTCCATCAGCAGAGAATACGTCACTCTAGAGTGCTCATCCCT  800

seq1  AAATGGAAC  809
      |||||||||
seq2  AAATGGAAC  809