BAC Information

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BAC

Clone NameB6Ng01-261N10
Chromosome7 (Build37)11 (Build37)
Map Location 10,684,988 - 10,686,07693,619,909 - 93,619,968
singlet/doubletsingletsinglet
Overlap geneLOC100042921
Upstream geneLOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152
Downstream geneVmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261N10.bB6Ng01-261N10.g
ACCGA066409GA066410
length1,086499
definitionB6Ng01-261N10.b B6Ng01-261N10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,684,988 - 10,686,076)(93,619,909 - 93,619,968)
sequence
gaattcctttttccaaacacattcataacaatctatagatttgcttttgt
taaggtaaaatgtttggaaaaaatatatatcttatttctttaagtctggg
catctgaaatgctctaaacaactatgcaattgaagacaccaatcctcggc
caatagaagaaacttttaccttcaagcagtgagaactggctctttttcca
ttgtctgttgcctgattatcagcctgttgcagattcatctcgtggagggc
atgggctatggcatgcacagcattgtatatgttatgactactctcactaa
aggtcatgtcaaacttctgttccattagccaatcaaatgaggcatcagat
gaattgttcttcagtattttacagttagatgctgagtcttcatagttaaa
atatttccactcttgcattagtagatataaatctgtgtttctgacatgga
accatgtctgtacaaaatttttaaagccagaaatctcaccatggtggggt
agaaaagtaagtgatccatagaatgtgccatgatttatgtctgtattact
ggtagggaaattccattctattgtggtgatccatattctctgtaaagtgg
gagggtccaacattctgaagatcaagtcaatgaaattgtatgtttctcca
taaatgataataatatttgttaatgacatcacaatttggctgtagtacat
ttcagttgtatgtggaagtgaaacgtcatcaacagagatcattttcacaa
acgcaaagcaaatttccttgttttcactctgtttcttcaactctaaaaga
aattggtttccttgatcgtcatctggaatgacaaggccaatccagttcca
tttgaagtaagtatgaaggagaccatttgccaatgctagagatgggcctt
ttggggccatctgatagagatagggatattgttcatcatcactgaacaca
gattggaaggtccataaggtaagcataagagctacacacaagaagcagca
tgaggtgaggtgcatgtggaaacacttgtaatcatattacctgcaaacag
gttgattaactgtactttttctcatatctctgattc
tttcccccaattcagcaagaagcaattatataagaagacctttaaatagg
aatggatgggtttggttgtgtgaattgttatggttgtaatcaactagggt
ggtaggtttcaattcttgtatattgatagaagttttaggttgttttagta
aaagtattttatattaactgaaatttaagctttattttagtcaatattgt
acataagctgtttatttaaaatatgattccatgttttaattttaaggttc
ttacaataacttttattgtatgtagatttttaatgttagggaaaaagaca
attacaaaatgggaacatgaagtggaagtttctggttctgtcacgtgatg
cagactcaggtggtgttttgctgaagctagacccgtgggaggacccgctg
tagtgctgggttagtggaaaggtattgtttgaatttgcttttgtcatgga
atatttggtttttccatctatggtgactgaaaggtttactaggtataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_10684988_10686076
seq2: B6Ng01-261N10.b_48_1133

seq1  GAATTCCTTTTTCCAAACACATTCATAACAATCTATAGATTTGCTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTTCCAAACACATTCATAACAATCTATAGATTTGCTTTTGT  50

seq1  TAAGGTAAAATGTTTGGAAAAAATATATATCTTATTTCTTTAAGTCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAAAATGTTTGGAAAAAATATATATCTTATTTCTTTAAGTCTGGG  100

seq1  CATCTGAAATGCTCTAAACAACTATGCAATTGAAGACACCAATCCTCGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAAATGCTCTAAACAACTATGCAATTGAAGACACCAATCCTCGGC  150

seq1  CAATAGAAGAAACTTTTACCTTCAAGCAGTGAGAACTGGCTCTTTTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAAGAAACTTTTACCTTCAAGCAGTGAGAACTGGCTCTTTTTCCA  200

seq1  TTGTCTGTTGCCTGATTATCAGCCTGTTGCAGATTCATCTCGTGGAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTTGCCTGATTATCAGCCTGTTGCAGATTCATCTCGTGGAGGGC  250

seq1  ATGGGCTATGGCATGCACAGCATTGTATATGTTATGACTACTCTCACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTATGGCATGCACAGCATTGTATATGTTATGACTACTCTCACTAA  300

seq1  AGGTCATGTCAAACTTCTGTTCCATTAGCCAATCAAATGAGGCATCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATGTCAAACTTCTGTTCCATTAGCCAATCAAATGAGGCATCAGAT  350

seq1  GAATTGTTCTTCAGTATTTTACAGTTAGATGCTGAGTCTTCATAGTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTTCTTCAGTATTTTACAGTTAGATGCTGAGTCTTCATAGTTAAA  400

seq1  ATATTTCCACTCTTGCATTAGTAGATATAAATCTGTGTTTCTGACATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCACTCTTGCATTAGTAGATATAAATCTGTGTTTCTGACATGGA  450

seq1  ACCATGTCTGTACAAAATTTTTAAAGCCAGAAATCTCACCATGGTGGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTCTGTACAAAATTTTTAAAGCCAGAAATCTCACCATGGTGGGGT  500

seq1  AGAAAAGTAAGTGATCCATAGAATGTGCCATGATTTATGTCTGTATTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTAAGTGATCCATAGAATGTGCCATGATTTATGTCTGTATTACT  550

seq1  GGTAGGGAAATTCCATTCTATTGTGGTGATCCATATTCTCTGTAAAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGAAATTCCATTCTATTGTGGTGATCCATATTCTCTGTAAAGTGG  600

seq1  GAGGGTCCAACATTCTGAAGATCAAGTCAATGAAATTGTATGTTTCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCCAACATTCTGAAGATCAAGTCAATGAAATTGTATGTTTCTCCA  650

seq1  TAAATGATAATAATATTTGTTAATGACATCACAATTTGGCTGTAGTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATAATAATATTTGTTAATGACATCACAATTTGGCTGTAGTACAT  700

seq1  TTCAGTTGTATGTGGAAGTGAAACGTCATCAACAGAGATCATTTTCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTGTATGTGGAAGTGAAACGTCATCAACAGAGATCATTTTCACAA  750

seq1  ACGCAAAGCAAATTTCCTTGTTTTCACTCTGTTTCTTCAACTCTAAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAAAGCAAATTTCCTTGTTTTCACTCTGTTTCTTCAACTCTAAAAGA  800

seq1  AATTGGTTTCCTTGATCGTCATCTGGAATGACAAGGCCAATCCAGTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTTTCCTTGATCGTCATCTGGAATGACAAGGCCAATCCAGTTCCA  850

seq1  TTTGAAGTAAAGTATGAAGGAGACCA-TTGCCAATGCTAGAGATGGGCCT  899
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  TTTGAAGT-AAGTATGAAGGAGACCATTTGCCAATGCTAGAGATGGGCCT  899

seq1  TTTGGGGCCATCTGATAGAGATAGGGATATTGTTCATCATCACTGAACAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGCCATCTGATAGAGATAGGGATATTGTTCATCATCACTGAACAC  949

seq1  AGATTGGAAAGGTCCAT-AGGTAAGCATAAGGAGCTACAACACAAGGAGC  998
      ||||||| ||||||||| |||||||||||| ||||||| ||||||| |||
seq2  AGATTGG-AAGGTCCATAAGGTAAGCATAA-GAGCTAC-ACACAAGAAGC  996

seq1  AGCATGAGGTGAGGTGCATGTGAAAACACTTGTAATCATATTTACCTGCA  1048
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  AGCATGAGGTGAGGTGCATGTGGAAACACTTGTAATCATA-TTACCTGCA  1045

seq1  AACA-GTTGATTACCTGTTACTTTTTCTCATATCTCTGATTC  1089
      |||| |||||||| ||| ||||||||||||||||||||||||
seq2  AACAGGTTGATTAACTG-TACTTTTTCTCATATCTCTGATTC  1086

seq1: chr11_93619909_93619968
seq2: B6Ng01-261N10.g_388_447

seq1  ACATGAAGTGGAAGTTTCTGGTTGTGTCATGTGATGTAGACTCACATGAT  50
      ||||||||||||||||||||||| ||||| |||||| |||||||  || |
seq2  ACATGAAGTGGAAGTTTCTGGTTCTGTCACGTGATGCAGACTCAGGTGGT  50

seq1  GTTTTGCTGA  60
      ||||||||||
seq2  GTTTTGCTGA  60