BAC Information

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BAC

Clone NameB6Ng01-262H05
Chromosome11 (Build37)
Map Location 80,013,421 - 80,156,250
singlet/doubletdoublet
Overlap geneRhot1, Rhbdl3
Upstream geneLOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135
Downstream gene5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3, Accn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262H05.bB6Ng01-262H05.g
ACCGA066863GA066864
length1,1761,080
definitionB6Ng01-262H05.b B6Ng01-262H05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,155,092 - 80,156,250)(80,013,421 - 80,014,504)
sequence
gaattccaatctcccagcagtgaaggggttaaattacagtcttcgctgcc
cttcagcttcttatttttacagacccattattccctccaggaaatgagtg
ccttggaacaccaggagaggagtctcacacagcaggcgctgcctctgctc
taagtgtggaagagctcaggcccctgggaaaccagacctctcacaggccc
tccaattccagtctctctcacagccacagaacaagtagggtaccagtctc
cctcatatcatgttcacccaattaaaagcacttgcctagcgtgtgtgagg
ccctgggttcaatgctcagtacaacgcacacacacacacacacacacaca
cacacacacacacaaaattactcgcacataaacacacaaaatcatacata
tacacacataatcacatacacacaaacacaatcacacacacactatcaca
cacaatcacacacatacaatatcacacactcagacaatcacacacacaaa
cacaatcatacacacataatcacacacacacacacacacacacacacaca
cacaaatacacacatacacaatcacacacaccatgaaagcatggcacata
aaccaggcatggtttatctctcctacaagaggctattcacttaattacat
aaaccttagggcagaggttttttctttgttttagcagctatctttcttga
gctttgacaatgaaattcagtttgcaaagatttgcttctcaaatattttt
ggaaaacatggaacacacagcaacgtataagtaaatagcttgcatattta
gaaatggaactgtgggttatgggcccagcaggcaattaataaattattcc
catcggtggatctttctattttcagtgtttaaaataaagaagtcttgatt
gaaagcctttttgtgagccacatctttgggctggaatgggttttctgact
ttaattctttgggtgtcaatttggaagttttttaaaaatctctctctctc
tctctctctctctctcacacacacacacacacactacactatcaatgata
tacacagcacacaagttcaaggtctattaaactaattgttttgtgtgtgc
ccatgtgtatgtggtgcatcaatggctgtgtgatttgtaatgttctgatg
tgagctgagaacggggtgtgccaagg
gaattcaagtcccaggaaccacatggtggctgacaaccatctataatgag
atctggtgccctcttctggcctgcaggcagaacactatctacataacaag
taaatctttaaaaaaaaaaaagaaaaaagaaaaaaaaaagtccctttttt
gctttaaaatcatacacagactgaagagtaacagtgtagagcctttatgt
tgcacacacaaagtcctaggttggcctcgaactcagaaatctgcctccct
ctacctctgcctcccaagtgctgggattaaaggcatgcgccaccactgcc
cggctggtatacagattaagatttatttattatctctaagtacactgtag
ctgtctttagatgcaccagaagagggcatccgatctcattacagatgatt
gtgagctactatgtggttgctgggatttgaactcaggacctttggaagag
cagtcagtgctcttaaccactgagcaatctcttcagcccatatatttttt
aaatttatttatacaatttatatatttatttattttagttctctcttctc
tctcttttgtttaggatttatttatttttatatatgtgacacactgtggc
tgtcttcagaagcaccagcagagggcagcagatcccattacagatggttg
tgagccaccatgtggtttgttgggaattgaactcaggacctctggaaaag
caaccagggcttttaaccactaagccatctctccagcccctctttttttt
ttttttaattattagatattttctttatttaaaatgttatccgtttccct
ggtttcccctctgaaacttccttaccctcttccccctcccctgcttcacc
aacccacccactcctgcttcctggtcctggcatttctctacactgggcca
tagagccttcatatgatgaagggcctcctcctctcactgatgactgccta
ggccatctctgctacatatgctgcagcttgttttttgtttttctggtttt
tggccttatattttttttttttttacttgggttatcgagccagggtttct
ttgtgtagcctggctgtcctggaactcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_80155092_80156250
seq2: B6Ng01-262H05.b_31_1206 (reverse)

seq1  CCTTGGCACA-CCTGTCTTCA-CTCACACTCAG-ACA-TACAGAATCACA  46
      |||||||||| || ||  ||| |||||| |||| ||| |||| |||||||
seq2  CCTTGGCACACCCCGTTCTCAGCTCACA-TCAGAACATTACA-AATCACA  48

seq1  CA--CATAGATACA-CACATACACATGGGCACAC---AAACAATTAGTTT  90
      ||  ||| ||| || |||||||||||||||||||   |||||||||||||
seq2  CAGCCATTGATGCACCACATACACATGGGCACACACAAAACAATTAGTTT  98

seq1  AATAGACCCTGAATGTGTGTG-TGTGTGTGTGTGTGTGTGTGT-GTGTGT  138
      |||||||| ||||  |||||| ||||| | |   ||   |||| ||||||
seq2  AATAGACCTTGAACTTGTGTGCTGTGTATATCATTGATAGTGTAGTGTGT  148

seq1  GTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTTT-AAAA  187
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTTTAAAAA  198

seq1  ACTTCC-AATTGACA-CCAAAGAATTAAAGTCAGAAA--CCATTCCAG-C  232
      |||||| |||||||| |||||||||||||||||||||  ||||||||| |
seq2  ACTTCCAAATTGACACCCAAAGAATTAAAGTCAGAAAACCCATTCCAGCC  248

seq1  CAAAGATGTGGCTCACAAAAAGGCTTTCAATCAAGACTTC-TTATTTTAA  281
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAAAGATGTGGCTCACAAAAAGGCTTTCAATCAAGACTTCTTTATTTTAA  298

seq1  ACACTGAAAATAGAAAGATCCACCTGAT-GGAATAATTTATTAATTGCCT  330
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  ACACTGAAAATAGAAAGATCCACC-GATGGGAATAATTTATTAATTGCCT  347

seq1  GCTGGGCCCATAACCCACAGTTCCATTTCTAAATATGCAAGCTATTTACT  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCCCATAACCCACAGTTCCATTTCTAAATATGCAAGCTATTTACT  397

seq1  TATACGTTGCTGTGTGTTCCATGTTTTCCAAAAATATTTGAGAAGCAAAT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGTTGCTGTGTGTTCCATGTTTTCCAAAAATATTTGAGAAGCAAAT  447

seq1  CTTTGCAAACTGAATTTCATTGTCAAAGCTCAAGAAAGATAGCTGCTAAA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAAACTGAATTTCATTGTCAAAGCTCAAGAAAGATAGCTGCTAAA  497

seq1  ACAAAGAAAAAACCTCTGCCCTAAGGTTTATGTAATTAAGTGAATAGCCT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAAAAACCTCTGCCCTAAGGTTTATGTAATTAAGTGAATAGCCT  547

seq1  CTTGTAGGAGAGATAAACCATGCCTGGTTTATGTGCCATGCTTTCATGGT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGGAGAGATAAACCATGCCTGGTTTATGTGCCATGCTTTCATGGT  597

seq1  GTGTGTGATTGTGTATGTGTGTATTTGTGTGTGTGTGTGTGTGTGTGTGT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGATTGTGTATGTGTGTATTTGTGTGTGTGTGTGTGTGTGTGTGT  647

seq1  GTGTGTGTGATTATGTGTGTATGATTGTGTTTGTGTGTGTGATTGTCTGA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGATTATGTGTGTATGATTGTGTTTGTGTGTGTGATTGTCTGA  697

seq1  GTGTGTGATATTGTATGTGTGTGATTGTGTGTGATAGTGTGTGTGTGATT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGATATTGTATGTGTGTGATTGTGTGTGATAGTGTGTGTGTGATT  747

seq1  GTGTTTGTGTGTATGTGATTATGTGTGTATATGTATGATTTTGTGTGTTT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGTGTATGTGATTATGTGTGTATATGTATGATTTTGTGTGTTT  797

seq1  ATGTGCGAGTAATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCGAGTAATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  847

seq1  GTGCGTTGTACTGAGCATTGAACCCAGGGCCTCACACACGCTAGGCAAGT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTTGTACTGAGCATTGAACCCAGGGCCTCACACACGCTAGGCAAGT  897

seq1  GCTTTTAATTGGGTGAACATGATATGAGGGAGACTGGTACCCTACTTGTT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAATTGGGTGAACATGATATGAGGGAGACTGGTACCCTACTTGTT  947

seq1  CTGTGGCTGTGAGAGAGACTGGAATTGGAGGGCCTGTGAGAGGTCTGGTT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTGTGAGAGAGACTGGAATTGGAGGGCCTGTGAGAGGTCTGGTT  997

seq1  TCCCAGGGGCCTGAGCTCTTCCACACTTAGAGCAGAGGCAGCGCCTGCTG  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGGCCTGAGCTCTTCCACACTTAGAGCAGAGGCAGCGCCTGCTG  1047

seq1  TGTGAGACTCCTCTCCTGGTGTTCCAAGGCACTCATTTCCTGGAGGGAAT  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGACTCCTCTCCTGGTGTTCCAAGGCACTCATTTCCTGGAGGGAAT  1097

seq1  AATGGGTCTGTAAAAATAAGAAGCTGAAGGGCAGCGAAGACTGTAATTTA  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTCTGTAAAAATAAGAAGCTGAAGGGCAGCGAAGACTGTAATTTA  1147

seq1  ACCCCTTCACTGCTGGGAGATTGGAATTC  1159
      |||||||||||||||||||||||||||||
seq2  ACCCCTTCACTGCTGGGAGATTGGAATTC  1176

seq1: chr11_80013421_80014504
seq2: B6Ng01-262H05.g_63_1142

seq1  GAATTCAAGTCCCAGGAACCACATGGTGGCTGACAACCATCTATAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCCCAGGAACCACATGGTGGCTGACAACCATCTATAATGAG  50

seq1  ATCTGGTGCCCTCTTCTGGCCTGCAGGCAGAACACTATCTACATAACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTGCCCTCTTCTGGCCTGCAGGCAGAACACTATCTACATAACAAG  100

seq1  TAAATCTTTAAAAAAAAAAAAGAAAAAAGAAAAAAAAAAGTCCCTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTTAAAAAAAAAAAAGAAAAAAGAAAAAAAAAAGTCCCTTTTTT  150

seq1  GCTTTAAAATCATACACAGACTGAAGAGTAACAGTGTAGAGCCTTTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAAATCATACACAGACTGAAGAGTAACAGTGTAGAGCCTTTATGT  200

seq1  TGCACACACAAAGTCCTAGGTTGGCCTCGAACTCAGAAATCTGCCTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACAAAGTCCTAGGTTGGCCTCGAACTCAGAAATCTGCCTCCCT  250

seq1  CTACCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACTGCC  300

seq1  CGGCTGGTATACAGATTAAGATTTATTTATTATCTCTAAGTACACTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGGTATACAGATTAAGATTTATTTATTATCTCTAAGTACACTGTAG  350

seq1  CTGTCTTTAGATGCACCAGAAGAGGGCATCCGATCTCATTACAGATGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTAGATGCACCAGAAGAGGGCATCCGATCTCATTACAGATGATT  400

seq1  GTGAGCTACTATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTACTATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAG  450

seq1  CAGTCAGTGCTCTTAACCACTGAGCAATCTCTTCAGCCCATATATTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTGCTCTTAACCACTGAGCAATCTCTTCAGCCCATATATTTTTT  500

seq1  AAATTTATTTATACAATTTATATATTTATTTATTTTAGTTCTCTCTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATTTATACAATTTATATATTTATTTATTTTAGTTCTCTCTTCTC  550

seq1  TCTCTTTTGTTTAGGATTTATTTATTTTTATATATGTGACACACTGTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTGTTTAGGATTTATTTATTTTTATATATGTGACACACTGTGGC  600

seq1  TGTCTTCAGAAGCACCAGCAGAGGGCAGCAGATCCCATTACAGATGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAGAAGCACCAGCAGAGGGCAGCAGATCCCATTACAGATGGTTG  650

seq1  TGAGCCACCATGTGGTTTGTTGGGAATTGAACTCAGGACCTCTGGAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACCATGTGGTTTGTTGGGAATTGAACTCAGGACCTCTGGAAAAG  700

seq1  CAACCAGGGCTTTTAACCACTAAGCCATCTCTCCAGCCCCTCTTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGGGCTTTTAACCACTAAGCCATCTCTCCAGCCCCTCTTTTTTTT  750

seq1  TTTTTTAATTATTAGATATTTTCTTTATTTAAAATGTTATCCGTTTCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATTATTAGATATTTTCTTTATTTAAAATGTTATCCGTTTCCCT  800

seq1  GGTTTCCCCTCTGAAACTTCCTTACCCTCTTCCCCCTCCCCTGC-TCACC  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGTTTCCCCTCTGAAACTTCCTTACCCTCTTCCCCCTCCCCTGCTTCACC  850

seq1  AACCCACCCACTCCTGCTTCCTGGTCCTGGCATTTCTCTACACTGGGCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACCCACTCCTGCTTCCTGGTCCTGGCATTTCTCTACACTGGGCCA  900

seq1  TAGAGCCTTCATATGATGAAGGGCCT-CTCCTCTCACTGATGACTGCCTA  948
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGAGCCTTCATATGATGAAGGGCCTCCTCCTCTCACTGATGACTGCCTA  950

seq1  GGCCATCCTCTGCTACATATGCTGCAGC-TGTTTTTTGTTTTTCTGGTTT  997
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  GGCCAT-CTCTGCTACATATGCTGCAGCTTGTTTTTTGTTTTTCTGGTTT  999

seq1  TTTGGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGG  1047
      ||  |||    || | ||||||||||||||  |||| || ||||| ||||
seq2  TT--GGC---CTTATATTTTTTTTTTTTTTACTTGGGTTATCGAGCCAGG  1044

seq1  GTTTCTTTGTGTAGCCCTGGCTGTCCTGGAACTCACT  1084
      |||||||||||||| ||||||||||||||||||||||
seq2  GTTTCTTTGTGTAG-CCTGGCTGTCCTGGAACTCACT  1080