BAC Information

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BAC

Clone NameB6Ng01-262K21
Chromosome11 (Build37)
Map Location 73,842,633 - 73,843,600
singlet/doubletsinglet
Overlap genenone
Upstream geneCamkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398
Downstream geneOlfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262K21.bB6Ng01-262K21.g
ACCGA067030GA067031
length1,172972
definitionB6Ng01-262K21.b B6Ng01-262K21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatacagaatgtttgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaatcctgagat
tccacctcacaccagtcagaatggctaaaatcaaaaattcatgtgagagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaagcagtctggcagttcctca
gaaaattgcatagtactactgaaggatccctcaatacctctcctaggcat
atatccagaagaggttccaactggtaagaaagacacatgctccactatgt
ccatagtatccttattcataatagccagaatctggaaagaacccagttcc
ccttcaacagaggaatggatacagaaaatgtggtacatttacacaatgga
gtactactcagctattaaaaagaatgaatttgtgaagttcctaggtaaat
ggatagacctggaggccatcatcctgagtgaggtaacccaatcacaaaag
aactcacacaatatgtactcactgataattggatattagcccagaaactt
agaatacccaagatataagatacaatttgctaaacacatgaaactcaaga
agaacgaagaccaaagtgtggacactttgccccttcttagaattgggaac
agaagacccaggaaggagttacagagaaacagtttggagctgagacaaaa
ggatgaaccatctagagaccgccatatccagggatccatcccataatcag
tctctaaaagctgacaccattgcatacactagcaagattttcctgaaaag
acccatatagtgctgtttcttgtgagactaggctggggcctagcaaacac
agaagtggatgctcacagtcagttattggatggatcacagggccccaatg
gaagagctagagaaagtaaccaaggagctaaagggatctgcaacactata
ggtggaacacatatgactaccagtacccccagagctcgtgtctctagctg
catatgtatcagaagatggcctagttgcatcactggaaagagaggccatg
gtggtgcaaactttatatgctccagtacagggaatgcaggccataattgg
aatgggtgtggggtgggcgaac
gaattcacagagcagaaattaagcaaggaatttgtgaatgcatttgtgtg
taaagatcaagatgaaaaattcaggtttgggtttaaataaaaacataatg
gcatatttgttagcaaattcaggtttattatccatatttattatttggtc
tgagatttggggaccaaatgccctggatcaatggtaaaattatacaaact
agaactccaataagcacttatagtgctcaaatgggcttaacgtaaaaaac
aaaaacaaacaaacaaaacttttttcttcttcttttttaattaggtattt
atttcatttacacttccaatgctatcccaaaagtcccccattcccccaac
cacccactcccacttcttggccctggcattcccctgtactgaggcatata
aagtttgcacgaccaatgggcctctctttccactggtggccgactaggcc
atctcaaacaaaacttctatgacaagccttttgaatagataattactatg
cataaggataggaatgttggtttttagctttataaatgggagaatttgtg
gtaatagcaaaggataattttgtagccagaagtacttccctaactgaata
taaaatgtgaagtcaatagataaaacatcattcgattgaatggctctcaa
aattgcaggcatattgtcagtatgggctatagttattggaattttgctgc
ttttttcttttatcacattattacaagactgacaccaaacattaagaatg
gccttatggacacctttcaataagacaaaaaggccaccacagattgggaa
aggatctttacctatcctaaatcagataggggactaatatccaatatata
ataaagaattcaagaaggtggactctagaaaatcaaataaccccattaaa
aaatggggctcaaagctaaaacaagaaattcttaccttgagaatactcga
atggctgaaaacacctgataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_73842633_73843600
seq2: B6Ng01-262K21.g_67_1038

seq1  GAATTCACAGAGCAGAAATTAAGCAAGGAATTTGTGAATGCATTTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGCAGAAATTAAGCAAGGAATTTGTGAATGCATTTGTGTG  50

seq1  TAAAGATCAAGATGAAAAATTCAGGTTTGGGTTTAAATAAAAACATAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATCAAGATGAAAAATTCAGGTTTGGGTTTAAATAAAAACATAATG  100

seq1  GCATATTTGTTAGCAAATTCAGGTTTATTATCCATATTTATTATTTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTGTTAGCAAATTCAGGTTTATTATCCATATTTATTATTTGGTC  150

seq1  TGAGATTTGGGGACCAAATGCCCTGGATCAATGGTAAAATTATACAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTGGGGACCAAATGCCCTGGATCAATGGTAAAATTATACAAACT  200

seq1  AGAACTCCAATAAGCACTTATAGTGCTCAAATGGGCTTAACGTAAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCCAATAAGCACTTATAGTGCTCAAATGGGCTTAACGTAAAAAAC  250

seq1  AAAAACAAACAAACAAAACTTTTTTCTTCTTCTTTTTTAATTAGGTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACAAACAAAACTTTTTTCTTCTTCTTTTTTAATTAGGTATTT  300

seq1  ATTTCATTTACACTTCCAATGCTATCCCAAAAGTCCCCCATTCCCCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTACACTTCCAATGCTATCCCAAAAGTCCCCCATTCCCCCAAC  350

seq1  CACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATA  400

seq1  AAGTTTGCACGACCAATGGGCCTCTCTTTCCACTGGTGGCCGACTAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCACGACCAATGGGCCTCTCTTTCCACTGGTGGCCGACTAGGCC  450

seq1  ATCTCAAACAAAACTTCTATGACAAGCCTTTTGAATAGATAATTACTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAACAAAACTTCTATGACAAGCCTTTTGAATAGATAATTACTATG  500

seq1  CATAAGGATAGGAATGTTGGTTTTTAGCTTTATAAATGGGAGAATTTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGATAGGAATGTTGGTTTTTAGCTTTATAAATGGGAGAATTTGTG  550

seq1  GTAATAGCAAAGGATAATTTTGTAGCCAGAAGTACTTCCCTAACTGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGCAAAGGATAATTTTGTAGCCAGAAGTACTTCCCTAACTGAATA  600

seq1  TAAAATGTGAAGTCAATAGATAAAACATCATTCGATTGAATGGCTCTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTGAAGTCAATAGATAAAACATCATTCGATTGAATGGCTCTCAA  650

seq1  AATTGCAGGCATATTGTCAGTATGGGCTATAGTTATTGGAATTTTGCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAGGCATATTGTCAGTATGGGCTATAGTTATTGGAATTTTGCTGC  700

seq1  TTTTT--CTTTATCACATTATTACAAGACTGACACCAAACATTAAGAATG  748
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTATCACATTATTACAAGACTGACACCAAACATTAAGAATG  750

seq1  GCCTTATGGACACC-TTCAATAAGACAAAAAGGCCACCAACAGATTGGGA  797
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  GCCTTATGGACACCTTTCAATAAGACAAAAAGGCCACC-ACAGATTGGGA  799

seq1  AAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATAT  849

seq1  -ATAAAGAATTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAA  896
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATAAAGAATTCAAGAAGGTGGACTCTAGAAAATCAAATAACCCCATTAA  899

seq1  AAAATGGGGCTCAGAGCT-AAACAAAGAATTCTTACC-TGAGAAATAC-C  943
      ||||||||||||| |||| ||||||  |||||||||| |||| ||||| |
seq2  AAAATGGGGCTCAAAGCTAAAACAAGAAATTCTTACCTTGAG-AATACTC  948

seq1  GAATGGCTGAGAAACACCTGAAAAA  968
      |||||||||| |||||||||| |||
seq2  GAATGGCTGA-AAACACCTGATAAA  972