BAC Information

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BAC

Clone NameB6Ng01-264E15
Chromosome9 (Build37)11 (Build37)
Map Location 54,860,033 - 54,861,19294,124,107 - 94,124,203
singlet/doubletsingletsinglet
Overlap geneChrna3
Upstream geneTnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5
Downstream geneChrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264E15.bB6Ng01-264E15.g
ACCGA068232GA068233
length1,165911
definitionB6Ng01-264E15.b B6Ng01-264E15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,860,033 - 54,861,192)(94,124,107 - 94,124,203)
sequence
gaattcacagagatccaacctgcctctgactctacctcttgagtgctggg
attaaaaagtctttcagggctctatgggatgtttttctaaattagcaact
tgaacagactatggtagtttactaacaatgagtgtgagaccaggcgtcac
atctcagggtatgatatgtggggtttagcagcaacaaaattgaggtggaa
gcctttgaaaaaatagtaaagaatggaagtgatggggtgctgctggaata
ctttataacttcaagtggtttatgggctgaacaaatgagttctatagaga
ttctgagctaatggatttaatatttatgaacagaaaaaatttctatctag
ttttcaatcatggggatagtgaaatgttcatttatccttagtaaataact
agatgtttttctcccacatttctttttaacaacaacaacaaaaaaagatc
aagatgagtggaaaataacccttgaaatagcaaactccaagcagtgatcg
gataaagtgtggggctattgagaaagtgcccttgcatcagcacaggtgag
cgagccttggcgaacaggtcacagtttatgtgtcatctctggccatcaag
ggttgcagaaataatcctgcagttcctaaaatgcacaccaggatgaaaac
ccagagaaaaatgcgatcaatcaccatggcaacatacttccaatcatctt
gaatctggaaaacaaaaaataagagaaaatggaacatgaaggagaagggt
cagttttcagtattaagtcttataaggtaaagaatccattttatttaata
tataagaaatattttttacttattgatatgatctgaggaaatctatggtg
atggttaataccatagatttgtcatcttgacaggatctacaatcacctag
gagacaagccactgggcgtactcaggggagattatctaattaggtttgcc
tctggaggtgaccatgagggactatctagattagactgatgaagtggaaa
gacctaccctaaccatgggtcggcatcctttccttgtgctaaggttctta
gaagagtacagattgaagagtaaattgaatggtggcttccatctctctgc
ctcatggactttgggtgcactggtgacagcctgcctcacacctcctggcc
acatgactgcatgat
gaattccaggatagccagagatacacagagaaaccctgtctcaaaaaacc
aaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaagaaaagaaaagaaaaag
aaagcaagcaggaggagcaagccagcaagcagcactcatccatggcttat
gcatcatttcttgcctccaggattctgccttgacttcctttcctgatttc
catgggtaatggactagaaattgtaaactgaagtaaaccctttcctccct
aagttgcttttggtcacagtgttttatcacagcagtagaaagctaaccag
gaaaccaacgccccccccccccaaaatcatagtttttaaaagccaaatgt
agtagtgcatgcttgtaacctcatcactaggggattggggcaagcagatc
tctgggggtcaccagctagccacaggccaatgaaagactattaaaatata
tatatattatatattaaatatatatatataatgacaactcctgatgaaca
acagcgaggtttgtctgtatcttattttttcaaaccttagttttaatcat
ggttcttaaacactttaacctcccttgtagcccaccagaggtagtggaaa
agaaaggataggggggaagtagacctgtttagaaaggttctttggagcaa
ctcccgtccatgttgtctggaaatcagcagttcagttcacaggttagcag
gcagcaggttgatccacgcccaaacacttgacagatacaccagcagtcca
atttggtagagctgggatagcaaacacgaatcagcagccgaggcactgac
tagcagagccaactcggactcagcctcagcagtgggccagcagcaaggac
caagaggaacaccagaagtttctcagctatgcctctctcaaggaagcaaa
atcagcgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_54860033_54861192
seq2: B6Ng01-264E15.b_49_1213

seq1  GAATTCACAGAGATCCAACCTGCCTCTGACTCTACCTCTTGAGTGCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGATCCAACCTGCCTCTGACTCTACCTCTTGAGTGCTGGG  50

seq1  ATTAAAAAGTCTTTCAGGGCTCTATGGGATGTTTTTCTAAATTAGCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAGTCTTTCAGGGCTCTATGGGATGTTTTTCTAAATTAGCAACT  100

seq1  TGAACAGACTATGGTAGTTTACTAACAATGAGTGTGAGACCAGGCGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGACTATGGTAGTTTACTAACAATGAGTGTGAGACCAGGCGTCAC  150

seq1  ATCTCAGGGTATGATATGTGGGGTTTAGCAGCAACAAAATTGAGGTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGGTATGATATGTGGGGTTTAGCAGCAACAAAATTGAGGTGGAA  200

seq1  GCCTTTGAAAAAATAGTAAAGAATGGAAGTGATGGGGTGCTGCTGGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGAAAAAATAGTAAAGAATGGAAGTGATGGGGTGCTGCTGGAATA  250

seq1  CTTTATAACTTCAAGTAGTTTATGGGCTGAACAAATGAGTTCTATAGAGA  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTTATAACTTCAAGTGGTTTATGGGCTGAACAAATGAGTTCTATAGAGA  300

seq1  TTCTGAGCTAATGGATTTAATATTTATGAACAGAAAAAATTTCTATCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGCTAATGGATTTAATATTTATGAACAGAAAAAATTTCTATCTAG  350

seq1  TTTTCAATCATGGGGATAGTGAAATGTTCATTTATCCTTAGTAAATAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATCATGGGGATAGTGAAATGTTCATTTATCCTTAGTAAATAACT  400

seq1  AGATGTTTTTCTCCCACATTTCTTTTTAACAACAACAACAAAAAAAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTTTCTCCCACATTTCTTTTTAACAACAACAACAAAAAAAGATC  450

seq1  AAGATGAGTGGAAAATAACCCTTGAAATAGCAAACTCCAAGCAGTGATCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGTGGAAAATAACCCTTGAAATAGCAAACTCCAAGCAGTGATCG  500

seq1  GATAAAGTGTGGGGCTATTGAGAAAGTGCCCTTGCATCAGCACAGGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGTGTGGGGCTATTGAGAAAGTGCCCTTGCATCAGCACAGGTGAG  550

seq1  CGAGCCTTGGCGAACAGGTCACAGTTTATGTGTCATCTCTGGCCATCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCTTGGCGAACAGGTCACAGTTTATGTGTCATCTCTGGCCATCAAG  600

seq1  GGTTGCAGAAATAATCCTGCAGTTCCTAAAATGCACACCAGGATGAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAGAAATAATCCTGCAGTTCCTAAAATGCACACCAGGATGAAAAC  650

seq1  CCAGAGAAAAATGCGATCAATCACCATGGCAACATACTTCCAATCATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAAAAATGCGATCAATCACCATGGCAACATACTTCCAATCATCTT  700

seq1  GAATCTGGAAAACAAAAAATAAGAGAAAATGGAACATGAAGGAGAAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGGAAAACAAAAAATAAGAGAAAATGGAACATGAAGGAGAAGGGT  750

seq1  CAGTTTTCAGTATTAAGTCTTATAAGGTAAAGAATCCATTTTATTTAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCAGTATTAAGTCTTATAAGGTAAAGAATCCATTTTATTTAATA  800

seq1  TATAAGAAATATTTTTTACTTATTGATATGATCTGAGGAAATCTATGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAAATATTTTTTACTTATTGATATGATCTGAGGAAATCTATGGTG  850

seq1  ATGGTTAATACCATAGATTTGTCATCTTGACAGGATCTACAATCACCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAATACCATAGATTTGTCATCTTGACAGGATCTACAATCACCTAG  900

seq1  GAGACAAGCCACTGGGCGTACTCAGGGGAGATTATCTAATTAGGTTTGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGCCACTGGGCGTACTCAGGGGAGATTATCTAATTAGGTTTGCC  950

seq1  TCTGGAGGTGACCATGAGGGACTATCTAGATTAGACTGATGAAGGTGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTGGAGGTGACCATGAGGGACTATCTAGATTAGACTGATGAA-GTGGAA  999

seq1  AGACCTACCCTAACCAT-GGTCGGCATCC-TTCCCTGTGCT-AGGGTCCT  1047
      ||||||||||||||||| ||||||||||| |||| |||||| ||| || |
seq2  AGACCTACCCTAACCATGGGTCGGCATCCTTTCCTTGTGCTAAGGTTCTT  1049

seq1  AGAAGAGTACAGATTGAAGAGTAAATTGAATGGTGGCCTTCATCTCTCTG  1097
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  AGAAGAGTACAGATTGAAGAGTAAATTGAATGGTGGCTTCCATCTCTCTG  1099

seq1  CTTCATGG-CCTTGGGTGCACT-GTGACCAGCTGCCTCACA-CTCCTGCC  1144
      | |||||| | ||||||||||| |||||   |||||||||| |||||| |
seq2  CCTCATGGACTTTGGGTGCACTGGTGACAGCCTGCCTCACACCTCCTGGC  1149

seq1  ACCATGACTGCATGAT  1160
        ||||||||||||||
seq2  CACATGACTGCATGAT  1165

seq1: chr11_94124107_94124203
seq2: B6Ng01-264E15.g_68_171

seq1  GAATTCCAGGACAGCCAGAGATATACAGAGAAACCCTGTCTCGAAAA---  47
      ||||||||||| ||||||||||| |||||||||||||||||| ||||   
seq2  GAATTCCAGGATAGCCAGAGATACACAGAGAAACCCTGTCTCAAAAAACC  50

seq1  AAAAAAAAAAAAAAAAAAAAAAGAAAAG-AAAAGAAAAGAA---AAAAGG  93
      |||||||||||||||||||||| ||||| ||||||||||||   |||| |
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAGAAAAGAAAAAG  100

seq1  AAAG  97
      ||||
seq2  AAAG  104