BAC Information

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BAC

Clone NameB6Ng01-265A23
Chromosome11 (Build37)
Map Location 8,572,585 - 8,711,713
singlet/doubletdoublet
Overlap geneLOC638720
Upstream geneLOC665380, Tns3
Downstream genePkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13, LOC665435
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265A23.bB6Ng01-265A23.g
ACCGA068808GA068809
length1,154665
definitionB6Ng01-265A23.b B6Ng01-265A23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,710,555 - 8,711,713)(8,572,585 - 8,573,249)
sequence
gaattctttttactctaatttttcaaagcaaaggagtcaacccagtggct
gagccctggtggggtcccctctgtgtgtgtcctgcctctttgtcttggaa
caattccagcaattacagatcaggaaacacagaaactgtctccaggactg
tcaactgcaagtggcaaggtttcccatgccatcatagccaagggatgcct
ctctgccttggggaaggctgggggtggacagctggtcagctgtgaaatgg
acataagttggttcagagacagctagtggtcagcactgagagaggataca
tctgatcaacctgtggcttaaagcatggacattgtcgtcagagggagcat
aagggagctaggcagacttcctcatccagatgcaggggctggctgtgaaa
ggcagtgtcttccaggacactggtgacaatagaaccacctctgccatcgc
tgctgcaggcagggattgtggtcacatggataccacggaaatttccaagg
gttcacgtatctttgaacaaggatttgtacgagaagtgaaaataggaatg
gaggagaaaatagttcaataaaggcacttctgaaagtagaagaagaccag
gagaaacgccagaggctctcaggcacagtgcctggccctgggacattagt
agatctcacactttttctgtacattctgttctgtgtcaggttcagtagag
aagaggtcccagtctgaactattttatatgttaatttttacctcattcat
ctcgccaaacctgcatccaaacctcagcctagctgttcccaaggacaatg
ggcaacaaaatgaagagtcacttcccaaagctgagggcagcccagacacc
tccagcagccttggttaccagagttgttaggggcagagcctggtttcctg
gcagcctaatactctaggtttgggcaccatagtaatgggacggtaaggag
atggctcagtaggtaaagtgcttactgtatagcatgaggatctgaatgtg
actcccatctaaaagccagcactattagcacagaccttgggaagaatgag
ggctctcttggtcagtcattcaactgaaacagttagcttccagcttcagt
tggaaagccatgtcttaaacagaggtgtgggctggagaattgaatggctc
atca

gaattcagaaaccacttccccaaggctccataggtcttaatcatacgtga
gaaaattggtgtagtagagcaggtgacctaagagacctggctcctggatc
ttttttttttttttaaagatttacttatttattatatgtaagtacactgt
agctgtcctcagatactccagaagagggcatcagatttcattacggatgg
ttgtgagccaccatgtggttgctgggatttgaactcgggaccttcggaag
agcagtcggcactcttaaccactgagccatcttgcaagccccctggatct
ttctccaggtacagtcaagtccttcatcacactaggcttttgtccaagtt
ctagctacatcctgaaggtccagtgtctagtcagagatttactgtgggtg
tccctagtctcattcataccatttaagcagtatttgccccaatagacctt
cagcagagaaagactgcccatgggctcctttgttataatctaagagtgtt
attagaaacccaaaaaatgataaaggggctataccacaataccaaaaatg
acacaatgttaacatcccctagaggtgaggggaaaaaaaataattttgag
ggcaggagcaggggaagggaagttgagaagggagtagagacagaggaaga
aaggggacagagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_8710555_8711713
seq2: B6Ng01-265A23.b_44_1197 (reverse)

seq1  TGATGAGCCATTTCAATATCCTCCCAGCCCCAACACCTTCTGTTTTAGGA  50
      |||||||||| |||||| ||   |||||||  ||||| |||| |||| ||
seq2  TGATGAGCCA-TTCAAT-TC--TCCAGCCC--ACACC-TCTG-TTTAAGA  42

seq1  CATGGC-TTCCCACTGAAGCTGG-AGCTCACTGTTTCAGTTG-ATGACTG  97
      |||||| |||| ||||||||||| |||| ||||||||||||| |||||||
seq2  CATGGCTTTCCAACTGAAGCTGGAAGCTAACTGTTTCAGTTGAATGACTG  92

seq1  ACC-AGAGAGCC--CCTTCATCTCCCAGGTCTGTGCTTATAGGTGCTGGC  144
      ||| ||||||||  | ||| || || ||||||||||| ||| ||||||||
seq2  ACCAAGAGAGCCCTCATTCTTC-CCAAGGTCTGTGCTAATA-GTGCTGGC  140

seq1  TTTTAGATGGGAGTCACATTCAGATCCTCATGCCTATACAGTAAGCACTT  194
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTTAGATGGGAGTCACATTCAGATCCTCATG-CTATACAGTAAGCACTT  189

seq1  TACCTACTGAGCCATCTCCTTACCGTCCCATTACTATGGTGCCCAAACCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACTGAGCCATCTCCTTACCGTCCCATTACTATGGTGCCCAAACCT  239

seq1  AGAGTATTAGGGCTGCCAGG-AACCAGGCTCTGCCCCTAACAACTCTGGT  293
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  AGAGTATTA-GGCTGCCAGGAAACCAGGCTCTGCCCCTAACAACTCTGGT  288

seq1  AACCAAGGCTGCTGGAGGTGTCTGGGCTGCCCTCAGCTTTGGGAAGTGAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGGCTGCTGGAGGTGTCTGGGCTGCCCTCAGCTTTGGGAAGTGAC  338

seq1  TCTTCATTTTGTTGCCCATTGTCCTTGGGAACAGCTAGGCTGAGGTTTGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTTTGTTGCCCATTGTCCTTGGGAACAGCTAGGCTGAGGTTTGG  388

seq1  ATGCAGGTTTGGCGAGATGAATGAGGTAAAAATTAACATATAAAATAGTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGTTTGGCGAGATGAATGAGGTAAAAATTAACATATAAAATAGTT  438

seq1  CAGACTGGGACCTCTTCTCTACTGAACCTGACACAGAACAGAATGTACAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGGACCTCTTCTCTACTGAACCTGACACAGAACAGAATGTACAG  488

seq1  AAAAAGTGTGAGATCTACTAATGTCCCAGGGCCAGGCACTGTGCCTGAGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGTGAGATCTACTAATGTCCCAGGGCCAGGCACTGTGCCTGAGA  538

seq1  GCCTCTGGCGTTTCTCCTGGTCTTCTTCTACTTTCAGAAGTGCCTTTATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGCGTTTCTCCTGGTCTTCTTCTACTTTCAGAAGTGCCTTTATT  588

seq1  GAACTATTTTCTCCTCCATTCCTATTTTCACTTCTCGTACAAATCCTTGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATTTTCTCCTCCATTCCTATTTTCACTTCTCGTACAAATCCTTGT  638

seq1  TCAAAGATACGTGAACCCTTGGAAATTTCCGTGGTATCCATGTGACCACA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATACGTGAACCCTTGGAAATTTCCGTGGTATCCATGTGACCACA  688

seq1  ATCCCTGCCTGCAGCAGCGATGGCAGAGGTGGTTCTATTGTCACCAGTGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGCCTGCAGCAGCGATGGCAGAGGTGGTTCTATTGTCACCAGTGT  738

seq1  CCTGGAAGACACTGCCTTTCACAGCCAGCCCCTGCATCTGGATGAGGAAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGACACTGCCTTTCACAGCCAGCCCCTGCATCTGGATGAGGAAG  788

seq1  TCTGCCTAGCTCCCTTATGCTCCCTCTGACGACAATGTCCATGCTTTAAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTAGCTCCCTTATGCTCCCTCTGACGACAATGTCCATGCTTTAAG  838

seq1  CCACAGGTTGATCAGATGTATCCTCTCTCAGTGCTGACCACTAGCTGTCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGTTGATCAGATGTATCCTCTCTCAGTGCTGACCACTAGCTGTCT  888

seq1  CTGAACCAACTTATGTCCATTTCACAGCTGACCAGCTGTCCACCCCCAGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCAACTTATGTCCATTTCACAGCTGACCAGCTGTCCACCCCCAGC  938

seq1  CTTCCCCAAGGCAGAGAGGCATCCCTTGGCTATGATGGCATGGGAAACCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCAAGGCAGAGAGGCATCCCTTGGCTATGATGGCATGGGAAACCT  988

seq1  TGCCACTTGCAGTTGACAGTCCTGGAGACAGTTTCTGTGTTTCCTGATCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTTGCAGTTGACAGTCCTGGAGACAGTTTCTGTGTTTCCTGATCT  1038

seq1  GTAATTGCTGGAATTGTTCCAAGACAAAGAGGCAGGACACACACAGAGGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGCTGGAATTGTTCCAAGACAAAGAGGCAGGACACACACAGAGGG  1088

seq1  GACCCCACCAGGGCTCAGCCACTGGGTTGACTCCTTTGCTTTGAAAAATT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCACCAGGGCTCAGCCACTGGGTTGACTCCTTTGCTTTGAAAAATT  1138

seq1  AGAGTAAAAAGAATTC  1159
      ||||||||||||||||
seq2  AGAGTAAAAAGAATTC  1154


seq1: chr11_8572585_8573249
seq2: B6Ng01-265A23.g_65_729

seq1  GAATTCAGAAACCACTTCCCCAAGGCTCCATAGGTCTTAATCATACGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAACCACTTCCCCAAGGCTCCATAGGTCTTAATCATACGTGA  50

seq1  GAAAATTGGTGTAGTAGAGCAGGTGACCTAAGAGACCTGGCTCCTGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGTGTAGTAGAGCAGGTGACCTAAGAGACCTGGCTCCTGGATC  100

seq1  TTTTTTTTTTTTTTAAAGATTTACTTATTTATTATATGTAAGTACACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTAAAGATTTACTTATTTATTATATGTAAGTACACTGT  150

seq1  AGCTGTCCTCAGATACTCCAGAAGAGGGCATCAGATTTCATTACGGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCCTCAGATACTCCAGAAGAGGGCATCAGATTTCATTACGGATGG  200

seq1  TTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGGGACCTTCGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGGGACCTTCGGAAG  250

seq1  AGCAGTCGGCACTCTTAACCACTGAGCCATCTTGCAAGCCCCCTGGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCGGCACTCTTAACCACTGAGCCATCTTGCAAGCCCCCTGGATCT  300

seq1  TTCTCCAGGTACAGTCAAGTCCTTCATCACACTAGGCTTTTGTCCAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGGTACAGTCAAGTCCTTCATCACACTAGGCTTTTGTCCAAGTT  350

seq1  CTAGCTACATCCTGAAGGTCCAGTGTCTAGTCAGAGATTTACTGTGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTACATCCTGAAGGTCCAGTGTCTAGTCAGAGATTTACTGTGGGTG  400

seq1  TCCCTAGTCTCATTCATACCATTTAAGCAGTATTTGCCCCAATAGACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGTCTCATTCATACCATTTAAGCAGTATTTGCCCCAATAGACCTT  450

seq1  CAGCAGAGAAAGACTGCCCATGGGCTCCTTTGTTATAATCTAAGAGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGAAAGACTGCCCATGGGCTCCTTTGTTATAATCTAAGAGTGTT  500

seq1  ATTAGAAACCCAAAAAATGATAAAGGGGCTATACCACAATACCAAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAACCCAAAAAATGATAAAGGGGCTATACCACAATACCAAAAATG  550

seq1  ACACAATGTTAACATCCCCTAGAGGTGAGGGGAAAAAAAATAATTTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGTTAACATCCCCTAGAGGTGAGGGGAAAAAAAATAATTTTGAG  600

seq1  GGCAGGAGCAGGGGAAGGGAAGTTGAGAAGGGAGTAGAGACAGAGGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAGCAGGGGAAGGGAAGTTGAGAAGGGAGTAGAGACAGAGGAAGA  650

seq1  AAGGGGACAGAGAAG  665
      |||||||||||||||
seq2  AAGGGGACAGAGAAG  665


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