BAC Information

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BAC

Clone NameB6Ng01-265C08
Chromosome11 (Build37)
Map Location 53,154,267 - 53,279,728
singlet/doubletdoublet
Overlap geneAff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1
Upstream geneVdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205, Hspa4, Zcchc10
Downstream geneENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265C08.bB6Ng01-265C08.g
ACCGA068872GA068873
length1,1191,100
definitionB6Ng01-265C08.b B6Ng01-265C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,154,267 - 53,155,411)(53,278,629 - 53,279,728)
sequence
gaattctcataggatatcccatcataactgaatttctttacagaaagtaa
aaaagaaggctgctttctttctatcctcctcctttttttttttttttttt
tgagacagggtctcattacatagcccaggctaccctaacttcttatgtag
tccaggttgccttcaaactctccatcttcctacctcagcctaccaagtcc
tggaatgatgggtgtacaccacagtaagtttctgggtttttgttttgttt
tgttttgttgtttttttttttttttttttttttcgagataggggttctct
gtatagccctggctgtcctggaactcactttgtaaaccaggctggcctcg
aactcggaaatctgcctgcctctgcctcccgagtgctgggactaaaggcg
tgtgccaccacgccctactcacagtaagtttctgaatgactcacttggta
gtcaaataaagacagccatttactgacgcaaagttaatcattaaatcata
ctaaattgcagcagccagaaaatacatgtcgagcatgatattcttattaa
cggcaggccaaatctaaaagtgtcctggcagaaaagttaatatatttgtt
ttgaaactgctgctctttggctataataaataatgcgagatctgaaattc
ttaggagaactacctcaccactgttacttgatcctagataactgtggaaa
ttagcttttgctgaagatacgaaacttttttttaaggacttccgtctatg
aatcaaaatattcctctgttgtctaagcttcttgtcacagtcacaagatt
atgtccatgccacacagtcactacaggcatgtttttcagagcctacacta
tgggcgcacatagccctgttttaggcataaaggaggtgggtggactaggg
aatcagaattcgaggccatttggactatgtagacctcctcacagagccag
gaaaaaatcattagctacataaggatgttattattatttattttgcagcc
ctgctgctctggcctgtcagcatattatgcattatgtgggtacctgtcct
gctcgacaagccgagatgcatcgaatgcatacctcggatctgctgctctt
cgagtgctgggcggatgcc
gaattcctggccacttgattggtcagggtcgggggtagagttttcagacc
ttgatgcctcttgggaagtctgcaggtcctgcgtgaggtggtgtccacaa
gacctgaggacaaagccaaagttctctgaatctttctgccttagactgca
gatactcagaatcaggagtccttaatgctcacccttcctccgatgcgcca
gcagccttctctcccatctcctcaagggctggcctcatcgcacttcggat
ctcttcgacaggaaaaagcccatccagcaggccctgcggtggctctggac
cgggctgggcggcaagagtacggctcaaagagggatccagtctggccagc
tcttgaaccagcgcctcaaaatgccgactaggccaagtagtcttggaatc
aaactggccccaagtcagggaagtgtggtgaggggaccctggagtctcag
agtctgaaggtctcaagacatcgactgggggaggcttgaggggttttttc
tctgtagctgcagaggggtcagtggtcccattagtgtcaaaggttgggat
gtcgtcatttgtagtctctggaatgcttgtgggtctggagagatccacag
agccgttcaccgcttgcccacagtcctctgtacccgtgatccctggagtc
tcatggaggggtctctctgctgaaactgcaatctgaccagcttttttgct
taagtcgttttcatactgccggtaggaggtgctggaagtagacgggatac
tgaatcagaaaaggctctggtgcagacaagagctcaaggtctggctgctt
gccgccatcccccaacacctgggcattacctgagagagttcccagccctt
tggcattttttagatgtatatgtgttaggagagtgtctctctgtgtttgg
acacaggaagggattcacctggtggggagcccttgggaatcttgaggtga
cgttgttttggcttcttctcaggatcacgtcatcttcagggagggagggg
cccgaagtagacacggagttctcagagattctccgaccacagcagccgtt
tggtcttggagggcctctctcagggacacactctgtgacctcttctgagt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53154267_53155411
seq2: B6Ng01-265C08.b_48_1166

seq1  GAATTCTCATAGGATATCCCATCATAACTGAATTTCTTTACAGAAAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAGGATATCCCATCATAACTGAATTTCTTTACAGAAAGTAA  50

seq1  AAAAGAAGGCTGCTTTCTTTCTATCCTCCTCCTTTTTTTTTTTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGGCTGCTTTCTTTCTATCCTCCTCCTTTTTTTTTTTTTTTTTT  100

seq1  TGAGACAGGGTCTCATTACATAGCCCAGGCTACCCTAACTTCTTATGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGGTCTCATTACATAGCCCAGGCTACCCTAACTTCTTATGTAG  150

seq1  TCCAGGTTGCCTTCAAACTCTCCATCTTCCTACCTCAGCCTACCAAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTGCCTTCAAACTCTCCATCTTCCTACCTCAGCCTACCAAGTCC  200

seq1  TGGAATGATGGGTGTACACCACAGTAAGTTTCTGGGTTTTTGTTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGATGGGTGTACACCACAGTAAGTTTCTGGGTTTTTGTTTTGTTT  250

seq1  TGTTTTGTTGTTTTTTTTTTTTTTTTTTTTTTTCGAGATAGGGGTTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTGTTTTTTTTTTTTTTTTTTTTTTTCGAGATAGGGGTTCTCT  300

seq1  GTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG  350
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAAACCAGGCTGGCCTCG  350

seq1  AACTCGGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGACTAAAGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGACTAAAGGCG  400

seq1  TGTGCCACCACGCCCTACTCACAGTAAGTTTCTGAATGACTCACTTGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACCACGCCCTACTCACAGTAAGTTTCTGAATGACTCACTTGGTA  450

seq1  GTCAAATAAAGACAGCCATTTACTGACGCAGAGTTAATCATTAAATCATA  500
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTCAAATAAAGACAGCCATTTACTGACGCAAAGTTAATCATTAAATCATA  500

seq1  CTAGATTGCAGCAGCCAGAAAATACATGTCGAGCATGATATTCTTATTAA  550
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTGCAGCAGCCAGAAAATACATGTCGAGCATGATATTCTTATTAA  550

seq1  CGGCAGGCCAAATCTAAAAGTGTCCTGGCAGAGAAGTTAATATATTTGTT  600
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CGGCAGGCCAAATCTAAAAGTGTCCTGGCAGAAAAGTTAATATATTTGTT  600

seq1  TTGAAACTGCTGCTCTTTGGCTATAATAAATAATGCGAGATCTGAAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTGCTGCTCTTTGGCTATAATAAATAATGCGAGATCTGAAATTC  650

seq1  TTAGGAGAACTACCTCACCACTGTTACTTGATCCTAGATAACTGTGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGAACTACCTCACCACTGTTACTTGATCCTAGATAACTGTGGAAA  700

seq1  TTAGCTTTTGCTGAAGATACGAAACTTTTTTTTAAGGACTTCCGTCTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTTGCTGAAGATACGAAACTTTTTTTTAAGGACTTCCGTCTATG  750

seq1  AATCAAAATATTCCTCTGTTGTCTAAGCTTCTTGTCACAGTCACAAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAATATTCCTCTGTTGTCTAAGCTTCTTGTCACAGTCACAAGATT  800

seq1  ATGTCCATGCCACACAGTCACTACAGGCATG-TTTTCAGAGCCTACACTA  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGTCCATGCCACACAGTCACTACAGGCATGTTTTTCAGAGCCTACACTA  850

seq1  T-GGCGCACATAG-CCTGTTTTAGGCATAAAGGAGGTGG--TGACTAGGG  895
      | ||||||||||| |||||||||||||||||||||||||   ||||||||
seq2  TGGGCGCACATAGCCCTGTTTTAGGCATAAAGGAGGTGGGTGGACTAGGG  900

seq1  AATCAGGAATTCGAGGCCAATTTGGACTATGTAAGACCT-CTCACAGAGC  944
      ||||| |||||||||||| ||||||||||||| |||||| ||||||||||
seq2  AATCA-GAATTCGAGGCC-ATTTGGACTATGT-AGACCTCCTCACAGAGC  947

seq1  CAGGAAAAAATCCATTTAGCTACATAAGATTGTTATTTATTTATTTATTT  994
      ||||||||||||   |||||||||||||  |||||||   ||||||||||
seq2  CAGGAAAAAATC--ATTAGCTACATAAGGATGTTATT--ATTATTTATTT  993

seq1  TTGCCAGCCCTGCTTGCTCTGGCCCTGTTCAGGCCATATTTATTGCATAT  1044
      |   ||||||||| |||||||| |||| ||||  ||||||   ||||| |
seq2  T--GCAGCCCTGC-TGCTCTGG-CCTG-TCAG--CATATT--ATGCAT-T  1033

seq1  ATGTGGGTACACTGTCACTGTCTTCAGACAAGCAGAAGATGGCATCGGAT  1094
      |||||||||| ||||| ||| ||   ||||||| | |||| |||||| ||
seq2  ATGTGGGTAC-CTGTC-CTG-CT--CGACAAGCCG-AGAT-GCATCGAAT  1076

seq1  GCCCATTACACTCGGAAATCTGCTTGCCTCTTCTGAGTGCT-GGCGGATG  1143
      ||    ||| |||||  |||||||   |||||| ||||||| ||||||||
seq2  GC---ATAC-CTCGG--ATCTGCT--GCTCTTC-GAGTGCTGGGCGGATG  1117

seq1  CC  1145
      ||
seq2  CC  1119

seq1: chr11_53278629_53279728
seq2: B6Ng01-265C08.g_66_1165 (reverse)

seq1  ACTCAGAAGGAGGTCACAGGAGTGTGT-CCTG-GAGAGGCCCTCC-AGAC  47
      |||||||| ||||||||| |||||||| |||| |||||||||||| ||||
seq2  ACTCAGAA-GAGGTCACA-GAGTGTGTCCCTGAGAGAGGCCCTCCAAGAC  48

seq1  CAAACCGGCTGGCTGTGGTCGGAGAATCTCTGAGACCTCGGTGTCTACTC  97
      |||| ||||| |||||||||||||||||||||||| ||| ||||||||| 
seq2  CAAA-CGGCT-GCTGTGGTCGGAGAATCTCTGAGAACTCCGTGTCTACTT  96

seq1  CGGGCCCCTCCCTCCCTGAAGATGACGTGTTCCTGAG-AGAAGCCAAAAC  146
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  CGGGCCCCTCCCTCCCTGAAGATGACGTGATCCTGAGAAGAAGCCAAAAC  146

seq1  ACCGTCACCTCAAGATTCCCAAGGGCTCCCCACCAGGTGAATCCCTTCCT  196
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCACCTCAAGATTCCCAAGGGCTCCCCACCAGGTGAATCCCTTCCT  196

seq1  GTGTCCAAACACAGAGAGACACTCTCCTAACACATATACATCTAAAAAAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAAACACAGAGAGACACTCTCCTAACACATATACATCTAAAAAAT  246

seq1  GCCAAAGGGCTGGGAACTCTCTCAGGTAATGCCCAGGTGTTGGGGGATGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGGGCTGGGAACTCTCTCAGGTAATGCCCAGGTGTTGGGGGATGG  296

seq1  CGGCAAGCAGCCAGACCTTGAGCTCTTGTCTGCACCAGAGCCTTTTCTGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAAGCAGCCAGACCTTGAGCTCTTGTCTGCACCAGAGCCTTTTCTGA  346

seq1  TTCAGTATCCCGTCTACTTCCAGCACCTCCTACCGGCAGTATGAAAACGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATCCCGTCTACTTCCAGCACCTCCTACCGGCAGTATGAAAACGA  396

seq1  CTTAAGCAAAAAAGCTGGTCAGATTGCAGTTTCAGCAGAGAGACCCCTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCAAAAAAGCTGGTCAGATTGCAGTTTCAGCAGAGAGACCCCTCC  446

seq1  ATGAGACTCCAGGGATCACGGGTACAGAGGACTGTGGGCAAGCGGTGAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACTCCAGGGATCACGGGTACAGAGGACTGTGGGCAAGCGGTGAAC  496

seq1  GGCTCTGTGGATCTCTCCAGACCCACAAGCATTCCAGAGACTACAAATGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTGGATCTCTCCAGACCCACAAGCATTCCAGAGACTACAAATGA  546

seq1  CGACATCCCAACCTTTGACACTAATGGGACCACTGACCCCTCTGCAGCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATCCCAACCTTTGACACTAATGGGACCACTGACCCCTCTGCAGCTA  596

seq1  CAGAGAAAAAACCCCTCAAGCCTCCCCCAGTCGATGTCTTGAGACCTTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAAAACCCCTCAAGCCTCCCCCAGTCGATGTCTTGAGACCTTCA  646

seq1  GACTCTGAGACTCCAGGGTCCCCTCACCACACTTCCCTGACTTGGGGCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGAGACTCCAGGGTCCCCTCACCACACTTCCCTGACTTGGGGCCA  696

seq1  GTTTGATTCCAAGACTACTTGGCCTAGTCGGCATTTTGAGGCGCTGGTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTCCAAGACTACTTGGCCTAGTCGGCATTTTGAGGCGCTGGTTC  746

seq1  AAGAGCTGGCCAGACTGGATCCCTCTTTGAGCCGTACTCTTGCCGCCCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGGCCAGACTGGATCCCTCTTTGAGCCGTACTCTTGCCGCCCAG  796

seq1  CCCGGTCCAGAGCCACCGCAGGGCCTGCTGGATGGGCTTTTTCCTGTCGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTCCAGAGCCACCGCAGGGCCTGCTGGATGGGCTTTTTCCTGTCGA  846

seq1  AGAGATCCGAAGTGCGATGAGGCCAGCCCTTGAGGAGATGGGAGAGAAGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCGAAGTGCGATGAGGCCAGCCCTTGAGGAGATGGGAGAGAAGG  896

seq1  CTGCTGGCGCATCGGAGGAAGGGTGAGCATTAAGGACTCCTGATTCTGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCGCATCGGAGGAAGGGTGAGCATTAAGGACTCCTGATTCTGAG  946

seq1  TATCTGCAGTCTAAGGCAGAAAGATTCAGAGAACTTTGGCTTTGTCCTCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCAGTCTAAGGCAGAAAGATTCAGAGAACTTTGGCTTTGTCCTCA  996

seq1  GGTCTTGTGGACACCACCTCACGCAGGACCTGCAGACTTCCCAAGAGGCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGTGGACACCACCTCACGCAGGACCTGCAGACTTCCCAAGAGGCA  1046

seq1  TCAAGGTCTGAAAACTCTACCCCCGACCCTGACCAATCAAGTGGCCAGGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTCTGAAAACTCTACCCCCGACCCTGACCAATCAAGTGGCCAGGA  1096

seq1  ATTC  1100
      ||||
seq2  ATTC  1100