BAC Information

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BAC

Clone NameB6Ng01-265E21
Chromosome11 (Build37)
Map Location 46,657,591 - 46,785,754
singlet/doubletdoublet
Overlap geneTimd4
Upstream geneClint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1
Downstream geneSgcd, LOC628753, LOC100039647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265E21.bB6Ng01-265E21.g
ACCGA068990GA068991
length1,014796
definitionB6Ng01-265E21.b B6Ng01-265E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,784,739 - 46,785,754)(46,657,591 - 46,658,386)
sequence
gaattcttatcactttttggctatcagcaccaattctcatgagctggaaa
tgaaaggcattctacaccttagccaaagcacctcttttacattagcattc
ttcagccttgaaactataggcatcccaactggaaagtaaaaagtgagtac
atctgcagctcattgtaactgggtagctttggaacattggcgtcttctga
acacagaattggaggttggtccataggagttaatagacaagatcttgttt
tgaaattttaactcagccaaagtctgtctagataaattacatactaccat
gtccttgtaaaaagccttgctgttggcttgcccctcccagatccgagatg
ctaagagttaaggccaattgcatccttctcgggacagtggagggtctgga
tactctcaaacttattcccaaggctagagcttatttgcttccactgctca
taaaaccttaggaatggttgggtcagtcatggatttcccatctactggtg
tcagtttccaaatggcaaaacatgtatgtgtacctttaatgggtctcatg
taaccaacctaacagaaccctgaaagagattggagactataacaaatagg
aaccgatggcatatttataatggagtaacacaaaagcaatttccatccaa
tattttcatgaagaggtgggatagattttcttatctctcttagtcaacat
tttgcccacaaaagcatacctgatgtggtcatactttagataggaggtag
gacatccctcatgatggataccctttggagaagacactctgggactctta
acaacaacaaaaaaaaaaatgtggtcataaaagttcaattgttctgtgat
tatgaactttgaaaaaggaaccacatctggatgaataaagcaatggagta
tttactttgtgttattttaggttttattttattttgtttcgttttgtttt
ctctgggtttgggtgtgagatgagagagtgttttaggttttgttaaataa
catcattcttgcac
gaattctgcagtcaagtgaggagtttttaaaacaggaatctctaggttcc
agtcctctagctattcttttatgcttagtccaggtaatgagttgaacatc
caagtattttttaaggacccaaagaaatgcaaccagagctattaccagaa
ttttggagtggtcctcctagagttgccgcatgttgctgggaaaattgggg
tcttagagttcttagtctacttaataaaagaattttaaaaaatggactca
aaaggaagcatgaagacaatttcattggaggtttttttttttataagaaa
aatgtactggacctggtgacacatgtcttcaatccctgtcatgagcaggc
aaaagcaggtgggtctctgtgagttggaggctggcctggtctatatagca
catttgaggacagccagaactatatagtgagaatttgtctcaaaactaac
aaaacgaacaaacaagcaaacaactctcaaactctggagcaggacagttc
taaatctccactgctgactgtaggaaggagattgtgaggataaagcgaca
aagcaaagacgtgaactttgagttaggcctgaatgcaagctagccaagtg
atgggcaaacagccacttggggaaatgcactttaaagagagagaagctgt
ttccctaactgagcagccttgtctggcctcagtggaagagaatgcatgta
gtccctacagtgacttgtgcaggggtggactgatacccagggagggcctc
ccctttctcagaggagataggaagagtagaagggggaggggctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_46784739_46785754
seq2: B6Ng01-265E21.b_46_1059 (reverse)

seq1  GTGCAAGGATTGATGTTATTTAAACAAAACTAAAACACTCTTCTCATCTC  50
      |||||| || |||||||||||||  ||| ||||||||||| |||||||||
seq2  GTGCAA-GAATGATGTTATTTAACAAAACCTAAAACACTC-TCTCATCTC  48

seq1  ACACCCAAACCCAGAGAAAACAAAACGAAACAAAATAAAATAAAACCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAAACCCAGAGAAAACAAAACGAAACAAAATAAAATAAAACCTAA  98

seq1  AATAACACAAAGTAAATACTCCATTGCTTTATTCATCCAGATGTGGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACACAAAGTAAATACTCCATTGCTTTATTCATCCAGATGTGGTTCC  148

seq1  TTTTTCAAAGTTCATAATCACAGAACAATTGAACTTTTATGACCACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAAGTTCATAATCACAGAACAATTGAACTTTTATGACCACATTT  198

seq1  TTTTTTTTGTTGTTGTTAAGAGTCCCAGAGTGTCTTCTCCAAAGGGTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGTTGTTGTTAAGAGTCCCAGAGTGTCTTCTCCAAAGGGTATC  248

seq1  CATCATGAGGGATGTCCTACCTCCTATCTAAAGTATGACCACATCAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGAGGGATGTCCTACCTCCTATCTAAAGTATGACCACATCAGGTA  298

seq1  TGCTTTTGTGGGCAAAATGTTGACTAAGAGAGATAAGAAAATCTATCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGTGGGCAAAATGTTGACTAAGAGAGATAAGAAAATCTATCCCA  348

seq1  CCTCTTCATGAAAATATTGGATGGAAATTGCTTTTGTGTTACTCCATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCATGAAAATATTGGATGGAAATTGCTTTTGTGTTACTCCATTAT  398

seq1  AAATATGCCATCGGTTCCTATTTGTTATAGTCTCCAATCTCTTTCAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGCCATCGGTTCCTATTTGTTATAGTCTCCAATCTCTTTCAGGGT  448

seq1  TCTGTTAGGTTGGTTACATGAGACCCATTAAAGGTACACATACATGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAGGTTGGTTACATGAGACCCATTAAAGGTACACATACATGTTTT  498

seq1  GCCATTTGGAAACTGACACCAGTAGATGGGAAATCCATGACTGACCCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGGAAACTGACACCAGTAGATGGGAAATCCATGACTGACCCAAC  548

seq1  CATTCCTAAGGTTTTATGAGCAGTGGAAGCAAATAAGCTCTAGCCTTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTAAGGTTTTATGAGCAGTGGAAGCAAATAAGCTCTAGCCTTGGG  598

seq1  AATAAGTTTGAGAGTATCCAGACCCTCCACTGTCCCGAGAAGGATGCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTTGAGAGTATCCAGACCCTCCACTGTCCCGAGAAGGATGCAAT  648

seq1  TGGCCTTAACTCTTAGCATCTCGGATCTGGGAGGGGCAAGCCAACAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTAACTCTTAGCATCTCGGATCTGGGAGGGGCAAGCCAACAGCAA  698

seq1  GGCTTTTTACAAGGACATGGTAGTATGTAATTTATCTAGACAGACTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTACAAGGACATGGTAGTATGTAATTTATCTAGACAGACTTTGG  748

seq1  CTGAGTTAAAATTTCAAAACAAGATCTTGTCTATTAACTCCTATGGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTAAAATTTCAAAACAAGATCTTGTCTATTAACTCCTATGGACCA  798

seq1  ACCTCCAATTCTGTGTTCAGAAGACGCCAATGTTCCAAAGCTACCCAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAATTCTGTGTTCAGAAGACGCCAATGTTCCAAAGCTACCCAGTT  848

seq1  ACAATGAGCTGCAGATGTACTCACTTTTTACTTTCCAGTTGGGATGCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGCTGCAGATGTACTCACTTTTTACTTTCCAGTTGGGATGCCTA  898

seq1  TAGTTTCAAGGCTGAAGAATGCTAATGTAAAAGAGGTGCTTTGGCTAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCAAGGCTGAAGAATGCTAATGTAAAAGAGGTGCTTTGGCTAAGG  948

seq1  TGTAGAATGCCTTTCATTTCCAGCTCATGAGAATTGGTGCTGATAGCCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATGCCTTTCATTTCCAGCTCATGAGAATTGGTGCTGATAGCCAA  998

seq1  AAAGTGATAAGAATTC  1016
      ||||||||||||||||
seq2  AAAGTGATAAGAATTC  1014

seq1: chr11_46657591_46658386
seq2: B6Ng01-265E21.g_67_862

seq1  GAATTCTGCAGTCAAGTGAGGAGTTTTTAAAACAGGAATCTCTAGGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGTCAAGTGAGGAGTTTTTAAAACAGGAATCTCTAGGTTCC  50

seq1  AGTCCTCTAGCTATTCTTTTATGCTTAGTCCAGGTAATGAGTTGAACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTAGCTATTCTTTTATGCTTAGTCCAGGTAATGAGTTGAACATC  100

seq1  CAAGTATTTTTTAAGGACCCAAAGAAATGCAACCAGAGCTATTACCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATTTTTTAAGGACCCAAAGAAATGCAACCAGAGCTATTACCAGAA  150

seq1  TTTTGGAGTGGTCCTCCTAGAGTTGCCGCATGTTGCTGGGAAAATTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGTGGTCCTCCTAGAGTTGCCGCATGTTGCTGGGAAAATTGGGG  200

seq1  TCTTAGAGTTCTTAGTCTACTTAATAAAAGAATTTTAAAAAATGGACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGTTCTTAGTCTACTTAATAAAAGAATTTTAAAAAATGGACTCA  250

seq1  AAAGGAAGCATGAAGACAATTTCATTGGAGGTTTTTTTTTTTATAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGCATGAAGACAATTTCATTGGAGGTTTTTTTTTTTATAAGAAA  300

seq1  AATGTACTGGACCTGGTGACACATGTCTTCAATCCCTGTCATGAGCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACTGGACCTGGTGACACATGTCTTCAATCCCTGTCATGAGCAGGC  350

seq1  AAAAGCAGGTGGGTCTCTGTGAGTTGGAGGCTGGCCTGGTCTATATAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGGTGGGTCTCTGTGAGTTGGAGGCTGGCCTGGTCTATATAGCA  400

seq1  CATTTGAGGACAGCCAGAACTATATAGTGAGAATTTGTCTCAAAACTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGGACAGCCAGAACTATATAGTGAGAATTTGTCTCAAAACTAAC  450

seq1  AAAACGAACAAACAAGCAAACAACTCTCAAACTCTGGAGCAGGACAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGAACAAACAAGCAAACAACTCTCAAACTCTGGAGCAGGACAGTTC  500

seq1  TAAATCTCCACTGCTGACTGTAGGAAGGAGATTGTGAGGATAAAGCGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCCACTGCTGACTGTAGGAAGGAGATTGTGAGGATAAAGCGACA  550

seq1  AAGCAAAGACGTGAACTTTGAGTTAGGCCTGAATGCAAGCTAGCCAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGACGTGAACTTTGAGTTAGGCCTGAATGCAAGCTAGCCAAGTG  600

seq1  ATGGGCAAACAGCCACTTGGGGAAATGCACTTTAAAGAGAGAGAAGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAAACAGCCACTTGGGGAAATGCACTTTAAAGAGAGAGAAGCTGT  650

seq1  TTCCCTAACTGAGCAGCCTTGTCTGGCCTCAGTGGAAGAGAATGCATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAACTGAGCAGCCTTGTCTGGCCTCAGTGGAAGAGAATGCATGTA  700

seq1  GTCCCTACAGTGACTTGTGCAGGGGTGGACTGATACCCAGGGAGGGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTACAGTGACTTGTGCAGGGGTGGACTGATACCCAGGGAGGGCCTC  750

seq1  CCCTTTCTCAGAGGAGATAGGAAGAGTAGAAGGGGGAGGGGCTGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTCAGAGGAGATAGGAAGAGTAGAAGGGGGAGGGGCTGTG  796