BAC Information

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BAC

Clone NameB6Ng01-265F13
Chromosome2 (Build37)11 (Build37)
Map Location 77,235,063 - 77,235,39643,535,303 - 43,536,115
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOsbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1, LOC623706, LOC667906
Downstream geneZfp533, BC003993, LOC667920, OTTMUSG00000016703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265F13.bB6Ng01-265F13.g
ACCGA069022GA069023
length6321,130
definitionB6Ng01-265F13.b B6Ng01-265F13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,235,063 - 77,235,396)(43,535,303 - 43,536,115)
sequence
gaattcacccacacacacaatttttaaaaagtgtccaatttgtgttgttc
ataccctcactggagtatgatcaactcccagtgctatatccaccaaagga
tattaagtccttctcctgcacctccactagcagccaccagctcttgagag
ctacactcaagcatccctgtcaaaaatttgaactgttctctttgattgct
ttctttctaaatttttacatttggctgttggggggtacaaaggggtttta
gaaaccttccatgtctgtcttccttatttgtcaaatcatccatttaactg
ccatagtagctttcatgctctttataatcagttggagctcagatcatggt
cttttttatgacttctagcaaaagcatagactgtaaacacagcctcaact
gcagtaggaccacaacatggcctcaggtggcagcggaagaaaatagtaac
cgctgggcagtggtggcacacgcctttaatcccagcacttgggaggcaga
agcaggcagatttctgagttcgaggccaacctggtctacagagtgagttc
taggacagccagggttacacagagaaaccctttctcgaaaaaaaaaaaag
caaaaaaatgaaaatcatatcaatatgatgtg
gaattctttttaatcatgagcataagtatgtttaatttttttcaaaaatt
ttttacccaaccggaatgaaaaaaagatcaaagcttcttcaatttttttc
tgataatttcttttagttttttgagataataatataattttgtcattccc
cagttttctttcccttctcttcttttttcttttcttttcttttcttttct
tttcttttctttcctttttttttcttttctctcttttttttaaagcatag
aatagagtttatttagatcatggggaggggagataagagggtagtatttt
ttgagacagggtttctctgtatagtcctggctgtcctggaactcactctg
tagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccaa
gtgctaggattaaaggtgtgcgccaccacgcccggctcaaaagctacttt
taaaggtaacccctacacagtaaaacagttcttaaataaattaaaaaaaa
aaaaaacaaagactttattggataacgttacacaacattctttaacattt
aactctgagcagatggaaggtgagaaacaattcaagtctacaaatgaaat
aggcctgtgaagattttaatacagacaaaaggtagcatgaagcagagctt
aaatattaagcaactaaagcaataaaaatgaagttgtaacatggtaggcc
tagatcttaaataccaccaagtatcctttatttttttaatgaaaatctaa
tttgtaataaaaggcccttaaggatttgccatgaggaaaaaaaaaaaatg
tagatttctttacaaccctgatctctcccagtgcttttgcctttttaatt
ttttggtcatttcatcactctaccaattaaaaatttctaaagcttagagg
tctttctgaatacgatccatgcattgattccaacatggcttggggagata
cctgggtttcttgaagtgagcgtgagaggtactgctggtgtgggggtctt
aagacgaagaggtgaccccagagcctgagctggtgattcattcttctcca
ccagcttcccctgctgttaacaggtcctggagcccagcttgataacgatg
acgccaatgatgtgaaagtcctcaaagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_77235063_77235396
seq2: B6Ng01-265F13.b_94_609 (reverse)

seq1  GTAGCCCTGACTGTCCTAGAATTCACTCTGTAGACCAGGCTGGCCTCGAA  50
      ||| ||||| ||||||||||| ||||||||||||||||| ||||||||||
seq2  GTAACCCTGGCTGTCCTAGAACTCACTCTGTAGACCAGGTTGGCCTCGAA  50

seq1  CTCAGAAATTCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAGGGCGTG  100
      |||||||||   ||||| ||||||||||||||||||||||||| ||||||
seq2  CTCAGAAATCTGCCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTG  100

seq1  CGCCACCAC-GCC---TGGCTAGGCTTTCTTAACACAGCGA--TG-GGTA  143
       |||||||| |||    || ||   |||  |  | | || |  || ||  
seq2  TGCCACCACTGCCCAGCGGTTACTATTTTCTTCCGCTGCCACCTGAGGCC  150

seq1  AGGAT-------TACAGCA--TGA-GCGCTGGTGAC-----------TTT  172
      | | |       ||| |||  ||| ||  || | ||           || 
seq2  ATGTTGTGGTCCTACTGCAGTTGAGGCTGTGTTTACAGTCTATGCTTTTG  200

seq1  CAAGTAGTCA--------------CTCTG----------------GAAG-  191
      | || |||||               ||||                 ||| 
seq2  CTAGAAGTCATAAAAAAGACCATGATCTGAGCTCCAACTGATTATAAAGA  250

seq1  GCATG-----TGCT----CAGT---GTGGATG------------------  211
      |||||     | ||    ||||    ||||||                  
seq2  GCATGAAAGCTACTATGGCAGTTAAATGGATGATTTGACAAATAAGGAAG  300

seq1  ----------------------ACGCC----TACCCC---AGGGC----T  228
                            || ||    ||||||   |  ||    |
seq2  ACAGACATGGAAGGTTTCTAAAACCCCTTTGTACCCCCCAACAGCCAAAT  350

seq1  G------TGTAGATGGATCTCCTTC----------CTTC-----------  251
      |      | ||||  ||   |  ||           |||           
seq2  GTAAAAATTTAGAAAGAAAGCAATCAAAGAGAACAGTTCAAATTTTTGAC  400

seq1  ----ATCCTT--------CCCTGAAGACCAGG-CGCAATTAAGGCAGGAC  288
          || |||        | || |||| | ||  ||   ||  | |||  
seq2  AGGGATGCTTGAGTGTAGCTCTCAAGAGCTGGTGGCTGCTAGTGGAGG--  448

seq1  TGCA-TACAATGTGTTCAGA----GGGGTG--------ACTGG-------  318
      ||||  | || |  || | |      ||||        |||||       
seq2  TGCAGGAGAAGGACTTAATATCCTTTGGTGGATATAGCACTGGGAGTTGA  498

seq1  --ATACTCCAGTGAGGGT  334
        ||||||||||||||||
seq2  TCATACTCCAGTGAGGGT  516

seq1: chr11_43535303_43536115
seq2: B6Ng01-265F13.g_356_1191 (reverse)

seq1  TCTCTTTGGAGAC-TTCACATCA-TGGCGTCATCG-TATC-AGCTGGGCT  46
      ||||||||  ||| ||||||||| ||||||||||| |||| |||||||||
seq2  TCTCTTTGAGGACTTTCACATCATTGGCGTCATCGTTATCAAGCTGGGCT  50

seq1  -CAGGAACTG-TAACAGCAGGG--AGCT-GTGGAGAAG-ATGAATCA-CA  89
       ||||| ||| |||||||||||  |||| ||||||||| |||||||| ||
seq2  CCAGGACCTGTTAACAGCAGGGGAAGCTGGTGGAGAAGAATGAATCACCA  100

seq1  GCTCCAGGCTCTGGGGTCA-CTC-TCGTCTT-AGACCCCCACACCAGCAG  136
      ||| ||||||||||||||| ||| ||||||| ||||||||||||||||||
seq2  GCT-CAGGCTCTGGGGTCACCTCTTCGTCTTAAGACCCCCACACCAGCAG  149

seq1  TACCTCTCACGCTCAC-TCAGGAA--CCAGGTATCT-CCCAAGCCATG-T  181
      |||||||||||||||| ||| |||  |||||||||| ||||||||||| |
seq2  TACCTCTCACGCTCACTTCAAGAAACCCAGGTATCTCCCCAAGCCATGTT  199

seq1  GGAATC-ATGCATGGATCGTA-TCAGGAAGACCTCTAAGCTTTAGAAATT  229
      |||||| |||||||||||||| |||| |||||||||||||||||||||||
seq2  GGAATCAATGCATGGATCGTATTCAGAAAGACCTCTAAGCTTTAGAAATT  249

seq1  TTT-ATTTGTAGAGTGATGGAATTGACCAAAAAATTAAAAAGGCAAAAGC  278
      ||| ||| |||||||||| ||| |||||||||||||||||||||||||||
seq2  TTTAATTGGTAGAGTGAT-GAAATGACCAAAAAATTAAAAAGGCAAAAGC  298

seq1  ACTGGGAGAGATCA-GGTTGTAA--GAATCTACATTTTTTTTTTTTCCTC  325
      |||||||||||||| ||||||||   ||||||||||||||||||||||||
seq2  ACTGGGAGAGATCAGGGTTGTAAAGAAATCTACATTTTTTTTTTTTCCTC  348

seq1  ATGGCAAATCCTTAAGGGCCTTTTATTACAAATTAGATTTTCATTAAAAA  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAATCCTTAAGGGCCTTTTATTACAAATTAGATTTTCATTAAAAA  398

seq1  AATAAAGGATACTTGGTGGTATTTAAGATCTAGGCCTACCATGTTACAAC  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGATACTTGGTGGTATTTAAGATCTAGGCCTACCATGTTACAAC  448

seq1  TTCATTTTTATTGCTTTAGTTGCTTAATATTTAAGCTCTGCTTCATGCTA  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTATTGCTTTAGTTGCTTAATATTTAAGCTCTGCTTCATGCTA  498

seq1  CCTTTTGTCTGTATTAAAATCTTCACAGGCCTATTTCATTTGTAGACTTG  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTCTGTATTAAAATCTTCACAGGCCTATTTCATTTGTAGACTTG  548

seq1  AATTGTTTCTCACCTTCCATCTGCTCAGAGTTAAATGTTAAAGAATGTTG  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTCTCACCTTCCATCTGCTCAGAGTTAAATGTTAAAGAATGTTG  598

seq1  TGTAACGTTATCCAATAAAGTCTTTGTTTTTTTTTTTTTTAATTTATTTA  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACGTTATCCAATAAAGTCTTTGTTTTTTTTTTTTTTAATTTATTTA  648

seq1  AGAACTGTTTTACTGTGTAGGGGTTACCTTTAAAAGTAGCTTTTGAGCCG  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGTTTTACTGTGTAGGGGTTACCTTTAAAAGTAGCTTTTGAGCCG  698

seq1  GGCGTGGTGGCGCACACCTTTAATCCTAGCACTTGGGAGGCAGAGGCAGG  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGTGGCGCACACCTTTAATCCTAGCACTTGGGAGGCAGAGGCAGG  748

seq1  CGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGAC  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGAC  798

seq1  AGCCAGGACTATACAGAGAAACCCTGTCTCAAAAAATA  813
      ||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGACTATACAGAGAAACCCTGTCTCAAAAAATA  836