BAC Information

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BAC

Clone NameB6Ng01-265G03
Chromosome11 (Build37)
Map Location 63,948,977 - 64,084,021
singlet/doubletdoublet
Overlap geneEG544785
Upstream genePmp22, LOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik
Downstream geneHs3st3a1, LOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265G03.bB6Ng01-265G03.g
ACCGA069050GA069051
length1,078816
definitionB6Ng01-265G03.b B6Ng01-265G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,082,954 - 64,084,021)(63,948,977 - 63,949,786)
sequence
gaattcagttgaataataataagccttcaaattgatcagaactgctcttg
tccatttctggttttgtaacaaaacccgtgagactgactaatttatgaag
agcaaaagtttacatggttcatggctggggagctgggaattccaagagca
cagtgctagtgtttactctagaggcagcccctggaaagacagagcaaagt
tatcagctatggtgggttgaaaatggcctccataggctcataggtttgaa
tacttggtcctcagttggtaggtgaaactatttgagaaggattaggaggt
gtgtccttgttatagggggtgtattactggagagtgggctttgagttttc
aaaagcccatagcatccccagtcagctctctctgccccatgctagtcagc
tctctctgccccatgctagtggatgaagctgtaaggtctcggctaccgct
ccactgcaatgtttacctgcctgctgccaagatggtcatgggctctaacc
ctatggaactgtgatcaccaaatcaaacacgttcttttataagttgtctt
agtcagagctctttctcatcttacaaactttgcacaccatcacttggatt
ctatttctaattacctcccaaaggtcctgcttccaaactggaagacactt
ggttgagagagttgccactatatccccaaattctgtcagtcgtgacaaag
acatttcatgtcatcaattgcattgcattccaatcaaagtaactgtcagc
atctgcatgcaaacctagttccaagacaagccttctgttgctccctccac
ctcaaaaggctctccgagggcagtcaccttagcgttgtctgcaggctttt
aataccactgaactagcatcataaggccgcattcataagtcctcctaatc
cacagtaaaatttacgaaagcatttccttgctttcatcctcccaagaaca
caaccaattttgtactgtaaacgcccccccatacccttctatacttcaaa
ataattcctgaggttcttctacgaaacccgaggtctggaagctgaattga
ggaatagacactaaagtaggtcccgcat
gaattccctttctgcagtgattatcccatccttccttgtgtctctgacca
catgaggtttctttctttctctgtttcttcctagctttctccataagaag
tatgtcacctgagtttcacaaccctgcactgaaatggaggccccttctga
cctggagttgagaaggaaaagagggctttaagtcatattaaatcttgaaa
ttatgggggaaattgaagatttaaaaaccatcactgagcccaaggccctc
cctctgaagatgaggaaggggcccagagtttgaagtcactcgcccaggtt
cccacggttccagttggcactgtgtggcccgattctcctcactttcgtgc
caaggctctctctgtgacacccacagactcattttttttctcccttattt
gtggggaaacttgagttattggcagagcttattcagagccacagacagct
ggagccaatgatcagcgctaagccttgctttttttctccccagatgccag
ggctggggaagaagaggtgggacttcagagtcctacctctccccttcatg
ctgcataaaagctgtgccatggccttggcattggtgttggatttgctacc
tccgtcagtcaatcttttgttgctatagcaaaatgtcagaggctgggcat
gtatgtgtgtgtgtgtgtgtgtgtgtgtgagtaaatattcacttagccca
ttgcatttggagaaatgaaagaacatggcccccgttgtcttttgaagttc
aggagagggactttatgtcagatagcatcatggtgggagtgttggaaaga
cagaatatcccatggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_64082954_64084021
seq2: B6Ng01-265G03.b_45_1122 (reverse)

seq1  ATGC-GGACTTACTTT--GGTCTTTTCCTC-ACTCAGCTTCTAGA-CTTG  45
      |||| |||| ||||||   |||| |||||| | |||||||| ||| || |
seq2  ATGCGGGACCTACTTTAGTGTCTATTCCTCAATTCAGCTTCCAGACCTCG  50

seq1  GGTTTCGTAG-AGGACCTCA-GAATTATTTTGAAGTATAGAAGGGTAT-G  92
      |||||||||| || |||||| ||||||||||||||||||||||||||| |
seq2  GGTTTCGTAGAAGAACCTCAGGAATTATTTTGAAGTATAGAAGGGTATGG  100

seq1  GGGGGCGGTTACAGGTACAAAATTGGTTGTG-TCTTGGGA-GATGGAAGC  140
      ||||||| ||||| ||||||||||||||||| |||||||| |||| ||||
seq2  GGGGGCGTTTACA-GTACAAAATTGGTTGTGTTCTTGGGAGGATGAAAGC  149

seq1  AAGGAAATGC-TTCGTAAATTTTACTGTGGATTAGGAGGACTTTATG-AT  188
      |||||||||| |||||||||||||||||||||||||||||| ||||| ||
seq2  AAGGAAATGCTTTCGTAAATTTTACTGTGGATTAGGAGGAC-TTATGAAT  198

seq1  GCGGCCTTATGATGCTAGTTCAGTGGTATTAAAAGCCTGCAGACAACGCT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCCTTATGATGCTAGTTCAGTGGTATTAAAAGCCTGCAGACAACGCT  248

seq1  AAGGTGACTGCCCTCGGAGAGCCTTTTGAGGTGGAGGGAGCAACAGAAGG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGACTGCCCTCGGAGAGCCTTTTGAGGTGGAGGGAGCAACAGAAGG  298

seq1  CTTGTCTTGGAACTAGGTTTGCATGCAGATGCTGACAGTTACTTTGATTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTGGAACTAGGTTTGCATGCAGATGCTGACAGTTACTTTGATTG  348

seq1  GAATGCAATGCAATTGATGACATGAAATGTCTTTGTCACGACTGACAGAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAATGCAATTGATGACATGAAATGTCTTTGTCACGACTGACAGAA  398

seq1  TTTGGGGATATAGTGGCAACTCTCTCAACCAAGTGTCTTCCAGTTTGGAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGATATAGTGGCAACTCTCTCAACCAAGTGTCTTCCAGTTTGGAA  448

seq1  GCAGGACCTTTGGGAGGTAATTAGAAATAGAATCCAAGTGATGGTGTGCA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACCTTTGGGAGGTAATTAGAAATAGAATCCAAGTGATGGTGTGCA  498

seq1  AAGTTTGTAAGATGAGAAAGAGCTCTGACTAAGACAACTTATAAAAGAAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTAAGATGAGAAAGAGCTCTGACTAAGACAACTTATAAAAGAAC  548

seq1  GTGTTTGATTTGGTGATCACAGTTCCATAGGGTTAGAGCCCATGACCATC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGATTTGGTGATCACAGTTCCATAGGGTTAGAGCCCATGACCATC  598

seq1  TTGGCAGCAGGCAGGTAAACATTGCAGTGGAGCGGTAGCCGAGACCTTAC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGCAGGCAGGTAAACATTGCAGTGGAGCGGTAGCCGAGACCTTAC  648

seq1  AGCTTCATCCACTAGCATGGGGCAGAGAGAGCTGACTAGCATGGGGCAGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCATCCACTAGCATGGGGCAGAGAGAGCTGACTAGCATGGGGCAGA  698

seq1  GAGAGCTGACTGGGGATGCTATGGGCTTTTGAAAACTCAAAGCCCACTCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGACTGGGGATGCTATGGGCTTTTGAAAACTCAAAGCCCACTCT  748

seq1  CCAGTAATACACCCCCTATAACAAGGACACACCTCCTAATCCTTCTCAAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAATACACCCCCTATAACAAGGACACACCTCCTAATCCTTCTCAAA  798

seq1  TAGTTTCACCTACCAACTGAGGACCAAGTATTCAAACCTATGAGCCTATG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCACCTACCAACTGAGGACCAAGTATTCAAACCTATGAGCCTATG  848

seq1  GAGGCCATTTTCAACCCACCATAGCTGATAACTTTGCTCTGTCTTTCCAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATTTTCAACCCACCATAGCTGATAACTTTGCTCTGTCTTTCCAG  898

seq1  GGGCTGCCTCTAGAGTAAACACTAGCACTGTGCTCTTGGAATTCCCAGCT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCCTCTAGAGTAAACACTAGCACTGTGCTCTTGGAATTCCCAGCT  948

seq1  CCCCAGCCATGAACCATGTAAACTTTTGCTCTTCATAAATTAGTCAGTCT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCATGAACCATGTAAACTTTTGCTCTTCATAAATTAGTCAGTCT  998

seq1  CACGGGTTTTGTTACAAAACCAGAAATGGACAAGAGCAGTTCTGATCAAT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGTTTTGTTACAAAACCAGAAATGGACAAGAGCAGTTCTGATCAAT  1048

seq1  TTGAAGGCTTATTATTATTCAACTGAATTC  1068
      ||||||||||||||||||||||||||||||
seq2  TTGAAGGCTTATTATTATTCAACTGAATTC  1078

seq1: chr11_63948977_63949786
seq2: B6Ng01-265G03.g_66_881

seq1  GAATTCCCTTTCTGCAGTGATTATCCCATCCTTCCTTGTGTCTCTGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTCTGCAGTGATTATCCCATCCTTCCTTGTGTCTCTGACCA  50

seq1  CATGAGGTTTCTTTCTTTCTCTGTTTCTTCCTAGCTTTCTCCATAAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGTTTCTTTCTTTCTCTGTTTCTTCCTAGCTTTCTCCATAAGAAG  100

seq1  TATGTCACCTGAGTTTCACAACCCTGCACTGAAATGGAGGCCCCTTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCACCTGAGTTTCACAACCCTGCACTGAAATGGAGGCCCCTTCTGA  150

seq1  CCTGGAGTTGAGAAGGAAAAGAGGGCTTTAAGTCATATTAAATCTTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGTTGAGAAGGAAAAGAGGGCTTTAAGTCATATTAAATCTTGAAA  200

seq1  TTATGGGGGAAATTGAAGATTTAAAAACCATCACTGAGCCCAAGGCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGGGAAATTGAAGATTTAAAAACCATCACTGAGCCCAAGGCCCTC  250

seq1  CCTCTGAAGATGAGGAAGGGGCCCAGAGTTTGAAGTCACTCGCCCAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAAGATGAGGAAGGGGCCCAGAGTTTGAAGTCACTCGCCCAGGTT  300

seq1  CCCACGGTTCCAGTTGGCACTGTGTGGCCCGATTCTCCTCACTTTCGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGGTTCCAGTTGGCACTGTGTGGCCCGATTCTCCTCACTTTCGTGC  350

seq1  CAAGGCTCTCTCTGTGACACCCACAGACTCATTTTTTTTCTCCCTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCTCTCTGTGACACCCACAGACTCATTTTTTTTCTCCCTTATTT  400

seq1  GTGGGGAAACTTGAGTTATTGGCAGAGCTTATTCAGAGCCACAGACAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAAACTTGAGTTATTGGCAGAGCTTATTCAGAGCCACAGACAGCT  450

seq1  GGAGCCAATGATCAGCGCTAAGCCTTGCTTTTTTTCTCCCCAGATGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAATGATCAGCGCTAAGCCTTGCTTTTTTTCTCCCCAGATGCCAG  500

seq1  GGCTGGGGAAGAAGAGGTGGGACTTCAGAGTCCTACCTCTCCCCTTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGAAGAAGAGGTGGGACTTCAGAGTCCTACCTCTCCCCTTCATG  550

seq1  CTGCATAAAAGCTGTGCCATGGCCTTGGCATTGGTGTTGGATTTGCTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAAAAGCTGTGCCATGGCCTTGGCATTGGTGTTGGATTTGCTACC  600

seq1  TCCGTCAGTCAATCTTTTGTTGCTATAGCAAAATGTCAGAGGCTGGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCAGTCAATCTTTTGTTGCTATAGCAAAATGTCAGAGGCTGGGCAT  650

seq1  GTATGTGTGTGTGTGTGTGTGTGTGTGTGAATAAAGATTCACTTAGCCCA  700
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  GTATGTGTGTGTGTGTGTGTGTGTGTGTGAGTAAATATTCACTTAGCCCA  700

seq1  TTGCATTTGGAG-AATG-AAGAACATGGCCCCAG-TGTC-TTTGAAGTTC  746
      |||||||||||| |||| |||||||||||||| | |||| ||||||||||
seq2  TTGCATTTGGAGAAATGAAAGAACATGGCCCCCGTTGTCTTTTGAAGTTC  750

seq1  AGGAGA-GGACTTTATGTCAGATAGCATCATGGTGGGAGTGTGGGAAAGA  795
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  AGGAGAGGGACTTTATGTCAGATAGCATCATGGTGGGAGTGTTGGAAAGA  800

seq1  CAG-ATATCCCATGGT  810
      ||| ||||||||||||
seq2  CAGAATATCCCATGGT  816