BAC Information

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BAC

Clone NameB6Ng01-265L01
Chromosome11 (Build37)
Map Location 96,187,928 - 96,320,582
singlet/doubletdoublet
Overlap geneHoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775
Upstream gene5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4
Downstream geneSkap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265L01.bB6Ng01-265L01.g
ACCGA069274GA069275
length1,116815
definitionB6Ng01-265L01.b B6Ng01-265L01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,187,928 - 96,189,040)(96,319,768 - 96,320,582)
sequence
gaattcaatactagtctgtgttctggatctggacaatcaaagctgaccac
cccccccccctacagagtctgggccccgccggcgccccctccccgtgggg
caggggcaggcttccagcactttccgcaggggtcctgctgcctcgaaacc
tccgaggcacacgtagggaggctgtttctttggggtgtggtacaagaaga
ggtccttaaccttcattgagtcgcttttggttcagacccttctaaacaaa
ccagaggaggcccttctcctcattccccggctcccctaccctattggctt
tattcttctccattacacggatgccctgtcggcctggtcgcagctacccc
agagctgctgaggtagataagactgggaatgtgcaacgcggggcttctta
ggaatgcctttctacttccctttgtatcctccctcccatccccctgcccc
agctatggactaagattcatacttataacttgtggagtttggggtttgtt
tagctatgtttattcttgaaaggaaagagtccgtatacccctccccctca
gtccacctcccggcttagggcatggatttctcctatcctaatgtttaaca
cttttgacacgtatcacccccatcttttcctcattgatcagtctccattg
tctgctgattggaagcttaggacactaacacctggaaatatagaccgcag
gctgccaggcaggcttcaaggcttctctatccgttcttgtcagctcttgt
ttcaccacttcaggtaccgtcattggtggttttcaaagactgggatggga
tgggcataggtagagtcccgctatccactttcttttgtatggaatctttg
gtccctaggtctttgtctctgggagcttattatcaaatcagtagcagcat
ttgggctccttaggagagtaacaatgctaaggggaaaagtcccctcctga
ttattctctcaatcctgggagatccagtcaatcccttcactatgtttgcc
cctgactttcaaaggcacacacaaagatcagaaagtgaattaaagcaagg
aagaagtcccactcttgaatatgtacagttagccaaggacttggcatgag
tcttcctttcctgtct
gaattcaggatctgggcagtgaaattcaaagtgagagaaattgattattt
aaaatctggtaagacattctggccagtgtctcacagtgctctagaagaac
tggggttccctgaccagggtcaccatacctgcaaatctcatcaaaagcac
tactgggtcagaggggaaaacagcaaagaaagaatatctcagtacagcac
acagggaagagtccctttgctctactgagcgtgactcaggatgacactac
acagaatagcgtgtgaagtcatgttcctcctattgcatattttcttctga
agaaacaactgcccctccccttccactgtcttccagatctccagtctcac
cattttcttgtctcttccatctttctgtctatctgttaaagcaaaatgaa
aaggcttccttctggtttgcagacctcctcaacctttcttctcctttcct
gtctgtcaacttcagtcagctcttcctcctttggctgttagggctttctc
tcagcagtccagcccactcctagtctcacgagtgattttccttccttaat
aatctgtcctttggggcatggtgacacatgcctttaatctcagcactcag
gaagcagaggcaggtggatttctgtgaattcaaggccagcctgggctaca
taacaagttttaggccagcctggactacatagtgagaccttggctcaaac
aacaaaaataagtaaactgtctctcttccagatggccttatcctcaaaac
tgttacttggacaaattgctaattttcccctgagagagagagagagagag
ggagagggagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96187928_96189040
seq2: B6Ng01-265L01.b_46_1161

seq1  GAATTCAATACTAGTCTGTGTTCTGGATCTGGACAATCAAAGCTGACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATACTAGTCTGTGTTCTGGATCTGGACAATCAAAGCTGACCAC  50

seq1  CCCCCCCCCCTACAGAGTCTGGGCCCCGCCGGCGCCCCCTCCCCGTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCTACAGAGTCTGGGCCCCGCCGGCGCCCCCTCCCCGTGGGG  100

seq1  CAGGGGCAGGCTTCCAGCACTTTCCGCAGGGGTCCTGCTGCCTCGAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCAGGCTTCCAGCACTTTCCGCAGGGGTCCTGCTGCCTCGAAACC  150

seq1  TCCGAGGCACACGTAGGGAGGCTGTTTCTTTGGGGTGTGGTACAAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGGCACACGTAGGGAGGCTGTTTCTTTGGGGTGTGGTACAAGAAGA  200

seq1  GGTCCTTAACCTTCATTGAGTCGCTTTTGGTTCAGACCCTTCTAAACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTAACCTTCATTGAGTCGCTTTTGGTTCAGACCCTTCTAAACAAA  250

seq1  CCAGAGGAGGCCCTTCTCCTCATTCCCCGGCTCCCCTACCCTATTGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGAGGCCCTTCTCCTCATTCCCCGGCTCCCCTACCCTATTGGCTT  300

seq1  TATTCTTCTCCATTACACGGATGCCCTGTCGGCCTGGTCGCAGCTACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCTCCATTACACGGATGCCCTGTCGGCCTGGTCGCAGCTACCCC  350

seq1  AGAGCTGCTGAGGTAGATAAGACTGGGAATGTGCAACGCGGGGCTTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGCTGAGGTAGATAAGACTGGGAATGTGCAACGCGGGGCTTCTTA  400

seq1  GGAATGCCTTTCTACTTCCCTTTGTATCCTCCCTCCCATCCCCCTGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCCTTTCTACTTCCCTTTGTATCCTCCCTCCCATCCCCCTGCCCC  450

seq1  AGCTATGGACTAAGATTCATACTTATAACTTGTGGAGTTTGGGGTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGGACTAAGATTCATACTTATAACTTGTGGAGTTTGGGGTTTGTT  500

seq1  TAGCTATGTTTATTCTTGAAAGGAAAGAGTCCGTATACCCCTCCCCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATGTTTATTCTTGAAAGGAAAGAGTCCGTATACCCCTCCCCCTCA  550

seq1  GTCCACCTCCCGGCTTAGGGCATGGATTTCTCCTATCCTAATGTTTAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCTCCCGGCTTAGGGCATGGATTTCTCCTATCCTAATGTTTAACA  600

seq1  CTTTTGACACGTATCACCCCCATCTTTTCCTCATTGATCAGTCTCCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGACACGTATCACCCCCATCTTTTCCTCATTGATCAGTCTCCATTG  650

seq1  TCTGCTGATTGGAAGCTTAGGACACTAACACCTGGAAATATAGACCGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGATTGGAAGCTTAGGACACTAACACCTGGAAATATAGACCGCAG  700

seq1  GCTGCCAGGCAGGCTTCAAGGCTTCTCTATCCGTTCTTGTCAGCTCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAGGCAGGCTTCAAGGCTTCTCTATCCGTTCTTGTCAGCTCTTGT  750

seq1  TTCACCACTTCAGGTACCGTCATTGGTGGTTTTCAAAGACTGGGATGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCACTTCAGGTACCGTCATTGGTGGTTTTCAAAGACTGGGATGGGA  800

seq1  TGGGCATAGGTAGAGTCCCGCTATCCAC-TTCTTTTGTATGGAATCTTTG  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGGCATAGGTAGAGTCCCGCTATCCACTTTCTTTTGTATGGAATCTTTG  850

seq1  GTCCCTAGGTCTTTGTCTCT-GGAGCTTATTATCAAATCAGTAGCAGCAT  898
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTCCCTAGGTCTTTGTCTCTGGGAGCTTATTATCAAATCAGTAGCAGCAT  900

seq1  TT-GGCTCCTTAGGAGAGTAACAATGCTAAGGGGAAAAGTCCCCCTCCTG  947
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTGGGCTCCTTAGGAGAGTAACAATGCTAAGGGGAAAAGT-CCCCTCCTG  949

seq1  ATTAT--TCTCAATCCTGGGAGATCCAGTC-ATCCCTTCACTATGTTTGC  994
      |||||  ||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTATTCTCTCAATCCTGGGAGATCCAGTCAATCCCTTCACTATGTTTGC  999

seq1  CCCTGACCTTTCAAAGGCACAACACAAAAGATCAGAAAGTGAATTAAAGC  1044
      |||||| ||||||||||||| |||| ||||||||||||||||||||||||
seq2  CCCTGA-CTTTCAAAGGCAC-ACAC-AAAGATCAGAAAGTGAATTAAAGC  1046

seq1  -AGGAAGAAGTCCCACTCTTG-ATATGTACAAGGTAG-CAAGGACTT-GC  1090
       |||||||||||||||||||| |||||||| || ||| ||||||||| ||
seq2  AAGGAAGAAGTCCCACTCTTGAATATGTAC-AGTTAGCCAAGGACTTGGC  1095

seq1  ATGGAGTCTTCCTTTCCCTGTCT  1113
      || |||||||||||| |||||||
seq2  AT-GAGTCTTCCTTT-CCTGTCT  1116

seq1: chr11_96319768_96320582
seq2: B6Ng01-265L01.g_65_879 (reverse)

seq1  TCTCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTCAGGGGAAAATTAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTCAGGGGAAAATTAGCAA  50

seq1  TTTGTCCAAGTAACAGTTTTGAGGATAAGGCCATCTGGAAGAGAGACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCAAGTAACAGTTTTGAGGATAAGGCCATCTGGAAGAGAGACAGT  100

seq1  TTACTTATTTTTGTTGTTTGAGCCAAGGTCTCACTATGTAGTCCAGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTATTTTTGTTGTTTGAGCCAAGGTCTCACTATGTAGTCCAGGCTG  150

seq1  GCCTAAAACTTGTTATGTAGCCCAGGCTGGCCTTGAATTCACAGAAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAACTTGTTATGTAGCCCAGGCTGGCCTTGAATTCACAGAAATCC  200

seq1  ACCTGCCTCTGCTTCCTGAGTGCTGAGATTAAAGGCATGTGTCACCATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTCTGCTTCCTGAGTGCTGAGATTAAAGGCATGTGTCACCATGC  250

seq1  CCCAAAGGACAGATTATTAAGGAAGGAAAATCACTCGTGAGACTAGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGGACAGATTATTAAGGAAGGAAAATCACTCGTGAGACTAGGAGT  300

seq1  GGGCTGGACTGCTGAGAGAAAGCCCTAACAGCCAAAGGAGGAAGAGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGACTGCTGAGAGAAAGCCCTAACAGCCAAAGGAGGAAGAGCTGA  350

seq1  CTGAAGTTGACAGACAGGAAAGGAGAAGAAAGGTTGAGGAGGTCTGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTTGACAGACAGGAAAGGAGAAGAAAGGTTGAGGAGGTCTGCAAA  400

seq1  CCAGAAGGAAGCCTTTTCATTTTGCTTTAACAGATAGACAGAAAGATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGAAGCCTTTTCATTTTGCTTTAACAGATAGACAGAAAGATGGA  450

seq1  AGAGACAAGAAAATGGTGAGACTGGAGATCTGGAAGACAGTGGAAGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAAGAAAATGGTGAGACTGGAGATCTGGAAGACAGTGGAAGGGGA  500

seq1  GGGGCAGTTGTTTCTTCAGAAGAAAATATGCAATAGGAGGAACATGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGTTGTTTCTTCAGAAGAAAATATGCAATAGGAGGAACATGACTT  550

seq1  CACACGCTATTCTGTGTAGTGTCATCCTGAGTCACGCTCAGTAGAGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCTATTCTGTGTAGTGTCATCCTGAGTCACGCTCAGTAGAGCAAA  600

seq1  GGGACTCTTCCCTGTGTGCTGTACTGAGATATTCTTTCTTTGCTGTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCTTCCCTGTGTGCTGTACTGAGATATTCTTTCTTTGCTGTTTTC  650

seq1  CCCTCTGACCCAGTAGTGCTTTTGATGAGATTTGCAGGTATGGTGACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGACCCAGTAGTGCTTTTGATGAGATTTGCAGGTATGGTGACCCT  700

seq1  GGTCAGGGAACCCCAGTTCTTCTAGAGCACTGTGAGACACTGGCCAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGGAACCCCAGTTCTTCTAGAGCACTGTGAGACACTGGCCAGAAT  750

seq1  GTCTTACCAGATTTTAAATAATCAATTTCTCTCACTTTGAATTTCACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACCAGATTTTAAATAATCAATTTCTCTCACTTTGAATTTCACTGC  800

seq1  CCAGATCCTGAATTC  815
      |||||||||||||||
seq2  CCAGATCCTGAATTC  815