BAC Information

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BAC

Clone NameB6Ng01-265M19
Chromosome11 (Build37)
Map Location 53,600,499 - 53,650,241
singlet/doubletdoublet
Overlap geneLOC622459
Upstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1
Downstream geneSlc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265M19.bB6Ng01-265M19.g
ACCGA069357GA069358
length1,2051,130
definitionB6Ng01-265M19.b B6Ng01-265M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,649,051 - 53,650,241)(53,600,499 - 53,601,633)
sequence
gaattcactctacagactgggctggcctcaaactcagagatctgctcacc
caggattaaaggcgtgtgccaccactactcaataataaatgtagagttta
ttccccttggtctccacccaactactgtatccttccccttggagcccaca
gctcctgccaggtgcccgttacagcagctcccttacccacccctccctca
caccatcaccatcatgcagctacaggtcataactgcttcccatggaagag
ccccacttcagtccgctacctagttcctaccacctgactttgatgaggcg
aggactctgtcatccccatctgaagacagcaatgccaaggctcagaggtt
tcacagcatgtgtgagggagggcacacggctggcgaacagcagagcgggt
ctccatttcagctgttccaaagtgtgtgtgcttgtcattaggctagatta
catcccacatactagaattcacctccccggactcggtgcgtctgtttact
ctggtcttccgtttctcagtccacaaccatttaatacgagaattgtaggg
cagtgctagacagcaggtctcctggaaaaatagtggaagtgaaggtggct
ggttatggtggagaaagggcacaaaagcctgtgacgctaggctggtgtga
atttgagtgtcccacatgaactcacttgcgatgcctcacctgtcctttgc
tctgaagggcaggcacacccctgacatcatagaccctgggggctgtagtg
aagtgctcagtcagccaaagaggtaacctggggttatctaatacctttcc
ccacttctcagcaccgctcttacccttgattctagctaacagacagagac
agacaggatacagtgttggcccttcaatggctggctttcatgatctaggg
tgatactgaaactgctgactcagtctgcaggaggatattactttttattt
taaggaactttcaaaaacacctaaaatttaatggtacatgcatcttagcc
ctggagtatccttggtacaagtttcctagcagtttacgtcacttgggaat
aagaacaaggccaggaagttgcctgttcagtccctgagacctaacttagg
taggcaataaagcagcttgtgtctgtcttatcctcaaccaggcccttctt
ggaaggaaatacaatgaaaggcgtgaacctttaaactctcttacacttgc
ctggc
gaattcacagcaatcctcctgccttagtcttctgaatgataggattacaa
gtgtgcaaatgtgtgtttctaagcctggctctttttttttcccccttctt
ccttttttttttttttttcccccggagacagagtttctctgtgtagccct
ggctgtcctggaactcactttgtagaccaggctggcctcgaactcagaaa
tccacctgcctctgcctcccaagtgctctattaaagcgtgcgccaccact
gcccagaaccaccttcttttaaggaatgtttttttgtgcactcatgaact
ctccacatcccacaccatggatgcctgtactaggaaggctgcaaagacca
caccagtcgttttcagaagccatcactcctagatgcagggccacatgcag
tcagtggcaggcaggggagtctttagggagaagcaaacctctaatcctaa
aaggtcagccctaattgcatgtgactcctgtattcaggaggggagagagg
gcgggaaaggaactggagagaggagaggagggttagatgaagatacagtc
aacttgtatacgaaattctttttttttcgagacagggtttctctgtatag
ccctggaactcactttgtagaccaggctggcctcgaactcagaaatccgc
ctgcctctgcctcccgagtgctgggattaaaggcgtgcgccaccacgccc
agctgcatacaaaatacttaaataaaaaaagaaaatactgctttctagag
ttcgtctgcattaaaatcagcacttccagagaaaacataagacattttac
aggggcaaaggaaaggacttaaagctgctcatcagttgtaccctttaagg
gctacctgattgcctacggatggccactgttcaacgggaaatgcagctaa
cacttatgtccacctttcgagtggacagagtgacaggttcttttgtgttt
gttggattaactttccagttcttgtgtttgttaggttaaccttcctggat
aataagaacgaatgctatgacctgctcccaactcagtcatagtcaagatg
cctattccacgctgctccagcataggtcacgagtcagcaggctccttctg
gaagtcaatacttgaggagattctgtgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53649051_53650241
seq2: B6Ng01-265M19.b_43_1247 (reverse)

seq1  GCCAGGCAAAGTG-AAGAGAGTTTTAAAGGGTCA-GCCTTTCATGGTA--  46
      ||||||| ||||| ||||||| |||||||| ||| ||||||||| |||  
seq2  GCCAGGC-AAGTGTAAGAGAG-TTTAAAGGTTCACGCCTTTCATTGTATT  48

seq1  TCCT--CCAGAAGGG-CTGG-TGA-GATAAGACAGGACAC-AGCTGCTTT  90
      ||||  | ||||||| |||| ||| ||||||||| ||||| |||||||||
seq2  TCCTTCCAAGAAGGGCCTGGTTGAGGATAAGACA-GACACAAGCTGCTTT  97

seq1  A-TGCCTAC--TAGGTAG--CTCAGGGACTGAACA-GCAACTTCCTGGCC  134
      | |||||||   || |||  ||||||||||||||| ||||||||||||||
seq2  ATTGCCTACCTAAGTTAGGTCTCAGGGACTGAACAGGCAACTTCCTGGCC  147

seq1  -TGT--CTAATCCCAAGTGACGTAAACTGCTAGGAAACTTTGTACCCAAG  181
       |||   || |||||||||||||||||||||||||||| ||||| |||||
seq2  TTGTTCTTATTCCCAAGTGACGTAAACTGCTAGGAAAC-TTGTA-CCAAG  195

seq1  GATACTCCAGGGCTAAGATGCATGTACCATTAAATTTTAGGTGTTTTTGA  231
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTCCAGGGCTAAGATGCATGTACCATTAAATTTTAGGTGTTTTTGA  245

seq1  AAGTTCCTTAAAATAAAAAGTAATATCCTCCTGCAGACTGAGTCAGCAGT  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTTAAAATAAAAAGTAATATCCTCCTGCAGACTGAGTCAGCAGT  295

seq1  TTCAGTATCACCCTAGATCATGAAAGCCAGCCATTGAAGGGCCAACACTG  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATCACCCTAGATCATGAAAGCCAGCCATTGAAGGGCCAACACTG  345

seq1  TATCCTGTCTGTCTCTGTCTGTTAGCTAGAATCAAGGGTAAGAGCGGTGC  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGTCTGTCTCTGTCTGTTAGCTAGAATCAAGGGTAAGAGCGGTGC  395

seq1  TGAGAAGTGGGGAAAGGTATTAGATAACCCCAGGTTACCTCTTTGGCTGA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTGGGGAAAGGTATTAGATAACCCCAGGTTACCTCTTTGGCTGA  445

seq1  CTGAGCACTTCACTACAGCCCCCAGGGTCTATGATGTCAGGGGTGTGCCT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACTTCACTACAGCCCCCAGGGTCTATGATGTCAGGGGTGTGCCT  495

seq1  GCCCTTCAGAGCAAAGGACAGGTGAGGCATCGCAAGTGAGTTCATGTGGG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCAGAGCAAAGGACAGGTGAGGCATCGCAAGTGAGTTCATGTGGG  545

seq1  ACACTCAAATTCACACCAGCCTAGCGTCACAGGCTTTTGTGCCCTTTCTC  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAAATTCACACCAGCCTAGCGTCACAGGCTTTTGTGCCCTTTCTC  595

seq1  CACCATAACCAGCCACCTTCACTTCCACTATTTTTCCAGGAGACCTGCTG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATAACCAGCCACCTTCACTTCCACTATTTTTCCAGGAGACCTGCTG  645

seq1  TCTAGCACTGCCCTACAATTCTCGTATTAAATGGTTGTGGACTGAGAAAC  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCACTGCCCTACAATTCTCGTATTAAATGGTTGTGGACTGAGAAAC  695

seq1  GGAAGACCAGAGTAAACAGACGCACCGAGTCCGGGGAGGTGAATTCTAGT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACCAGAGTAAACAGACGCACCGAGTCCGGGGAGGTGAATTCTAGT  745

seq1  ATGTGGGATGTAATCTAGCCTAATGACAAGCACACACACTTTGGAACAGC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGATGTAATCTAGCCTAATGACAAGCACACACACTTTGGAACAGC  795

seq1  TGAAATGGAGACCCGCTCTGCTGTTCGCCAGCCGTGTGCCCTCCCTCACA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGGAGACCCGCTCTGCTGTTCGCCAGCCGTGTGCCCTCCCTCACA  845

seq1  CATGCTGTGAAACCTCTGAGCCTTGGCATTGCTGTCTTCAGATGGGGATG  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGTGAAACCTCTGAGCCTTGGCATTGCTGTCTTCAGATGGGGATG  895

seq1  ACAGAGTCCTCGCCTCATCAAAGTCAGGTGGTAGGAACTAGGTAGCGGAC  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTCCTCGCCTCATCAAAGTCAGGTGGTAGGAACTAGGTAGCGGAC  945

seq1  TGAAGTGGGGCTCTTCCATGGGAAGCAGTTATGACCTGTAGCTGCATGAT  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGGGCTCTTCCATGGGAAGCAGTTATGACCTGTAGCTGCATGAT  995

seq1  GGTGATGGTGTGAGGGAGGGGTGGGTAAGGGAGCTGCTGTAACGGGCACC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGGTGTGAGGGAGGGGTGGGTAAGGGAGCTGCTGTAACGGGCACC  1045

seq1  TGGCAGGAGCTGTGGGCTCCAAGGGGAAGGATACAGTAGTTGGGTGGAGA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGAGCTGTGGGCTCCAAGGGGAAGGATACAGTAGTTGGGTGGAGA  1095

seq1  CCAAGGGGAATAAACTCTACATTTATTATTGAGTAGTGGTGGCACACGCC  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGGAATAAACTCTACATTTATTATTGAGTAGTGGTGGCACACGCC  1145

seq1  TTTAATCCTGGGTGAGCAGATCTCTGAGTTTGAGGCCAGCCCAGTCTGTA  1181
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCTGGGTGAGCAGATCTCTGAGTTTGAGGCCAGCCCAGTCTGTA  1195

seq1  GAGTGAATTC  1191
      ||||||||||
seq2  GAGTGAATTC  1205

seq1: chr11_53600499_53601633
seq2: B6Ng01-265M19.g_71_1200

seq1  GAATTCACAGCAATCCTCCTGCCTTAGTCTTCTGAATGATAGGATTACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCAATCCTCCTGCCTTAGTCTTCTGAATGATAGGATTACAA  50

seq1  GTGTGCAAATGTGTGTTTCTAAGCCTGGCTCTTTTTTTTTCCCCCTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAAATGTGTGTTTCTAAGCCTGGCTCTTTTTTTTTCCCCCTTCTT  100

seq1  CCTTTTTTTTTTTTTTTTCCCCCGGAGACAGAGTTTCTCTGTGTAGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTTTTTTTTTTCCCCCGGAGACAGAGTTTCTCTGTGTAGCCCT  150

seq1  GGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAA  200

seq1  TCCACCTGCCTCTGCCTCCCAAGTGCTCTATTAAAGCGTGCGCCACCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGCCTCTGCCTCCCAAGTGCTCTATTAAAGCGTGCGCCACCACT  250

seq1  GCCCAGAACCACCTTCTTTTAAGGAATGTTTTTTTGTGCACTCATGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAACCACCTTCTTTTAAGGAATGTTTTTTTGTGCACTCATGAACT  300

seq1  CTCCACATCCCACACCATGGATGCCTGTACTAGGAAGGCTGCAAAGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATCCCACACCATGGATGCCTGTACTAGGAAGGCTGCAAAGACCA  350

seq1  CACCAGTCGTTTTCAGAAGCCATCACTCCTAGATGCAGGGCCACATGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTCGTTTTCAGAAGCCATCACTCCTAGATGCAGGGCCACATGCAG  400

seq1  TCAGTGGCAGGCAGGGGAGTCTTTAGGGAGAAGCAAACCTCTAATCCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGCAGGCAGGGGAGTCTTTAGGGAGAAGCAAACCTCTAATCCTAA  450

seq1  AAGGTCAGCCCTAATTGCATGTGACTCCTGTATTCAGGAGGGGAGAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGCCCTAATTGCATGTGACTCCTGTATTCAGGAGGGGAGAGAGG  500

seq1  GCGGGAAAGGAACTGGAGAGAGGAGAGGAGGGTTAGATGAAGATACAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAAAGGAACTGGAGAGAGGAGAGGAGGGTTAGATGAAGATACAGTC  550

seq1  AACTTGTATACGAAATTCTTTTTTTTTCGAGACAGGGTTTCTCTGTATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTATACGAAATTCTTTTTTTTTCGAGACAGGGTTTCTCTGTATAG  600

seq1  CCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGC  650

seq1  CTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCC  700

seq1  AGCTGCATACAAAATACTTAAATAAAAAAAGAAAATACTGCTTTCTAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATACAAAATACTTAAATAAAAAAAGAAAATACTGCTTTCTAGAG  750

seq1  TTCGTCTGCATTAAAATCAGCACTTCCAGAGAAAACATAAGACATTTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCTGCATTAAAATCAGCACTTCCAGAGAAAACATAAGACATTTTAC  800

seq1  A-GGGCAAAGG-AAGGACTTAAAGCTGCTCATCAGTTGTACCC-TTAAGG  847
      | ||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  AGGGGCAAAGGAAAGGACTTAAAGCTGCTCATCAGTTGTACCCTTTAAGG  850

seq1  GCTACCTGATTGCCTACGGATGG-CACTG-TCAAC-GGAAATGCAGCTAA  894
      ||||||||||||||||||||||| ||||| ||||| ||||||||||||||
seq2  GCTACCTGATTGCCTACGGATGGCCACTGTTCAACGGGAAATGCAGCTAA  900

seq1  CACTTATGT-CACC-TTCGAGT-GACAGAGTGACAGGTTC-TTTGTGTTT  940
      ||||||||| |||| ||||||| ||||||||||||||||| |||||||||
seq2  CACTTATGTCCACCTTTCGAGTGGACAGAGTGACAGGTTCTTTTGTGTTT  950

seq1  GTTGGATTAACTTTTCCAGGTTCTTTGTGTTTGTTAGGTTAACCTTTCCT  990
      ||||||||||| |||||| |||| |||||||||||||||||||| |||||
seq2  GTTGGATTAAC-TTTCCA-GTTC-TTGTGTTTGTTAGGTTAACC-TTCCT  996

seq1  GGTATAATAAGAACGAATGCCTATTGACCCTGCTCCCAACTCAGGGTCAT  1040
      || |||||||||||||||| ||| ||| |||||||||||||||  |||||
seq2  GG-ATAATAAGAACGAATG-CTA-TGA-CCTGCTCCCAACTCA--GTCAT  1040

seq1  AGTCAGGATGCTTATT-CACGCTGCTCCCAGCATAGGGTCAC-AGTCAGG  1088
      ||||| ||||| |||| ||||||||| |||||||| |||||| |||||  
seq2  AGTCAAGATGCCTATTCCACGCTGCT-CCAGCATA-GGTCACGAGTCA--  1086

seq1  GCAGGGGTTTCCTTCTGGGAGGTCATAACTTGAGGAG-TTCTGTGAAC  1135
      |||||    ||||||| ||| ||||  |||||||||| ||||||||||
seq2  GCAGG---CTCCTTCT-GGAAGTCAATACTTGAGGAGATTCTGTGAAC  1130