BAC Information

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BAC

Clone NameB6Ng01-266N11
Chromosome11 (Build37)
Map Location 25,721,604 - 25,903,619
singlet/doubletdoublet
Overlap gene5730522E02Rik
Upstream geneLOC100042282
Downstream geneLOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266N11.bB6Ng01-266N11.g
ACCGA070133GA070134
length1,1451,128
definitionB6Ng01-266N11.b B6Ng01-266N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,902,461 - 25,903,619)(25,721,604 - 25,722,749)
sequence
gaattctaaatgaccttatatagtttgaaataactttatgctgaaaggac
aggacaggacaggacaggacaggacaggagccatatttccaaacaggtaa
cttgatccccaaaggctcaaaatcccagatttgtcattttacccttctga
catgaaaatatctgattggcataacagttgatatgtgtagcattttctct
tccaaatgtcttttctttaaaaaaaattgactcagactaagtgatacagt
tatttttgtaataggtcaaaggtagggttgtatgaagtttacacaggcag
gtctacaatcccttacccagaacccctggggcaggtgtatttctgcattc
aggatttttttttttttttagaaaggtaaaatggtacacatactacagat
tatgcaatattccagctgggtctggggcagcaccctataatcaaacacat
tcatgtttcggcattgaaatgtatgaatattcacactgagtgggataaat
aaagattcaaaataatcttcttgaaattagttcaggtctggttttgctgc
cacatgagttatgaaaagccttttaaagctttttgtttttagtgttgcag
atggaagaccgtgggccagtacttctatacttgttcattccctccagtta
cctttgctgacacagtttctaagttttatttcatgtggtccaaaatgagt
ttctgtaatcaaacaaacaagtgagggcaaataacttgctgataaacccg
ttcttcttttgcagagctgggaatcaatcccagaagcttacacatgctac
acaagggctctaccaatgaaatatactcccagcctcagattttttttttt
taaagtaaaaagtcaagaagtgttcttggttaaaaaatatgggcaaaact
ttgtgctgggtgccaggggagtgctagagtaataggatagtctgtatcct
ggcagaagaaatcgtgaatcatgcagatgagacatatagaatctcagtgt
gtgtccctttcccacatagtctcatcgtcttttctttctccctctttggt
gcatatgtgtgcacatatgcatatcacaatactatagaaatagcaagcat
ataataagtactagataaggttcaatagtcaatgctctctcgtca

gaattcactccatatcagtttggttgacagagttccaaagatcaggtgga
caaatggccttctttccaactaccactttcctgggatctgatattgctaa
tttcaaggggcgcttgccaaagtagctcacaacacactggctatgattta
tgcaagacgtgggagaacttccttctctctaagtgtctagtgattagtaa
aatatcaattcatcttattctgaattattttgatcaaggctgttgagaga
cactataaatttttttctttttcttctattattgtttcagactttgcaaa
aatgattcaaagaatctaagtacaacttttacccaaatttcctaaatatt
agcatatatcaaatatttattaatgttaataagtttgtcaaaatgaagga
gttaatattaaaattcagtcactctataataaacagagtttacccaatat
taccttatctgagtggtctaagattaccaacaatggtttacctgatattc
ataattttttccttaatttcctctagtctcatcagaatatctatgtcctc
catagtgcccagactgtggagtgcttcaagatagcagagatcatattagt
ctttcaaacgcccatagtttaatatgaaataaaaataaacctaaaagtta
gatattagaaaacatgcggaagttattttggattagaaagaagaacattg
tttatatttttaaaaatcaaacctggaatgatgctgtgccatactctcca
tacccaaataccatcaggagagagcctgtctctgaggaatgaaaatacac
ctgtgagcacagctaggacccccacttctgctgaaattcctggcccaaga
ggaacttgcccagtgccatcagggcacaggatccaaggaacagctgagac
aggatacttcatgtttccctctgcatcctggagctgaacctgtgccacag
gtctccatacccaaattcttctgagagactggtctcacaggagtactgac
acacagcttgcagaggacagccacagtcagagagagcagacatctacacc
agagaaatcagatgcagagcaagacccaaacaacggaaattcagtctact
gcatcatcagcaatcagctttcctacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25902461_25903619
seq2: B6Ng01-266N11.b_44_1188 (reverse)

seq1  TGAC-AGAGAGCATGGACTATTTGGAACACCTAATCTAGTACTTATTTAT  49
      |||| ||||||||| |||||||  ||  |||| |||||||||||| ||||
seq2  TGACGAGAGAGCATTGACTATT--GA--ACCTTATCTAGTACTTA-TTAT  45

seq1  ATGGTTTGGGTA-TTCTATAAGTA-TGTGATATGCATATGTGCACACATA  97
      ||| ||  | || |||||| |||| |||||||||||||||||||||||||
seq2  ATGCTT--GCTATTTCTAT-AGTATTGTGATATGCATATGTGCACACATA  92

seq1  TGCACCAAAGAGGGAGAAAGAAAAGACGATGAGAAACTATGTTGGGGAAA  147
      |||||||||||||||||||||||||||||||||  |||||||   || ||
seq2  TGCACCAAAGAGGGAGAAAGAAAAGACGATGAG--ACTATGT---GGGAA  137

seq1  AGGGACCAACACAACTGAGAATTCTATATGTCTCATCTGCATGATTCCAC  197
      ||||||  |||| |||||| |||||||||||||||||||||||||| |||
seq2  AGGGAC--ACAC-ACTGAG-ATTCTATATGTCTCATCTGCATGATT-CAC  182

seq1  GATTTCTTCTGCCAGGATACAGACTATCCTATTACTCTAGCACTCCCCTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTCTGCCAGGATACAGACTATCCTATTACTCTAGCACTCCCCTG  232

seq1  GCACCCAGCACAAAGTTTTGCCCATATTTTTTAACCAAGAACACTTCTTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAGCACAAAGTTTTGCCCATATTTTTTAACCAAGAACACTTCTTG  282

seq1  ACTTTTTACTTT-AAAAAAAAAAATCTGAGGCTGGGAGTATATTTCATTG  346
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTACTTTAAAAAAAAAAAATCTGAGGCTGGGAGTATATTTCATTG  332

seq1  GTAGAGCCCTTGTGTAGCATGTGTAAGCTTCTGGGATTGATTCCCAGCTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCCCTTGTGTAGCATGTGTAAGCTTCTGGGATTGATTCCCAGCTC  382

seq1  TGCAAAAGAAGAACGGGTTTATCAGCAAGTTATTTGCCCTCACTTGTTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAGAAGAACGGGTTTATCAGCAAGTTATTTGCCCTCACTTGTTTG  432

seq1  TTTGATTACAGAAACTCATTTTGGACCACATGAAATAAAACTTAGAAACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTACAGAAACTCATTTTGGACCACATGAAATAAAACTTAGAAACT  482

seq1  GTGTCAGCAAAGGTAACTGGAGGGAATGAACAAGTATAGAAGTACTGGCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGCAAAGGTAACTGGAGGGAATGAACAAGTATAGAAGTACTGGCC  532

seq1  CACGGTCTTCCATCTGCAACACTAAAAACAAAAAGCTTTAAAAGGCTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTCTTCCATCTGCAACACTAAAAACAAAAAGCTTTAAAAGGCTTTT  582

seq1  CATAACTCATGTGGCAGCAAAACCAGACCTGAACTAATTTCAAGAAGATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTCATGTGGCAGCAAAACCAGACCTGAACTAATTTCAAGAAGATT  632

seq1  ATTTTGAATCTTTATTTATCCCACTCAGTGTGAATATTCATACATTTCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAATCTTTATTTATCCCACTCAGTGTGAATATTCATACATTTCAA  682

seq1  TGCCGAAACATGAATGTGTTTGATTATAGGGTGCTGCCCCAGACCCAGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGAAACATGAATGTGTTTGATTATAGGGTGCTGCCCCAGACCCAGCT  732

seq1  GGAATATTGCATAATCTGTAGTATGTGTACCATTTTACCTTTCTAAAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTGCATAATCTGTAGTATGTGTACCATTTTACCTTTCTAAAAAA  782

seq1  AAAAAAAAATCCTGAATGCAGAAATACACCTGCCCCAGGGGTTCTGGGTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATCCTGAATGCAGAAATACACCTGCCCCAGGGGTTCTGGGTA  832

seq1  AGGGATTGTAGACCTGCCTGTGTAAACTTCATACAACCCTACCTTTGACC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTGTAGACCTGCCTGTGTAAACTTCATACAACCCTACCTTTGACC  882

seq1  TATTACAAAAATAACTGTATCACTTAGTCTGAGTCAATTTTTTTTAAAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAAAAATAACTGTATCACTTAGTCTGAGTCAATTTTTTTTAAAGA  932

seq1  AAAGACATTTGGAAGAGAAAATGCTACACATATCAACTGTTATGCCAATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATTTGGAAGAGAAAATGCTACACATATCAACTGTTATGCCAATC  982

seq1  AGATATTTTCATGTCAGAAGGGTAAAATGACAAATCTGGGATTTTGAGCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTCATGTCAGAAGGGTAAAATGACAAATCTGGGATTTTGAGCC  1032

seq1  TTTGGGGATCAAGTTACCTGTTTGGAAATATGGCTCCTGTCCTGTCCTGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGATCAAGTTACCTGTTTGGAAATATGGCTCCTGTCCTGTCCTGT  1082

seq1  CCTGTCCTGTCCTGTCCTTTCAGCATAAAGTTATTTCAAACTATATAAGG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTGTCCTGTCCTTTCAGCATAAAGTTATTTCAAACTATATAAGG  1132

seq1  TCATTTAGAATTC  1159
      |||||||||||||
seq2  TCATTTAGAATTC  1145


seq1: chr11_25721604_25722749
seq2: B6Ng01-266N11.g_68_1195

seq1  GAATTCACTCCATATCAGTTTGGTTGACAGAGTTCCAAAGATCAGGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCATATCAGTTTGGTTGACAGAGTTCCAAAGATCAGGTGGA  50

seq1  CAAATGGCCTTCTTTCCAACTACCACTTTCCTGGGATCTGATATTGCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCCTTCTTTCCAACTACCACTTTCCTGGGATCTGATATTGCTAA  100

seq1  TTTCAAGGGGCGCTTGCCAAAGTAGCTCACAACACACTGGCTATGATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGGGCGCTTGCCAAAGTAGCTCACAACACACTGGCTATGATTTA  150

seq1  TGCAAGACGTGGGAGAACTTCCTTCTCTCTAAGTGTCTAGTGATTAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGACGTGGGAGAACTTCCTTCTCTCTAAGTGTCTAGTGATTAGTAA  200

seq1  AATATCAATTCATCTTATTCTGAATTATTTTGATCAAGGCTGTTGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAATTCATCTTATTCTGAATTATTTTGATCAAGGCTGTTGAGAGA  250

seq1  CACTATAAATTTTTTTCTTTTTCTTCTATTATTGTTTCAGACTTTGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAAATTTTTTTCTTTTTCTTCTATTATTGTTTCAGACTTTGCAAA  300

seq1  AATGATTCAAAGAATCTAAGTACAACTTTTACCCAAATTTCCTAAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTCAAAGAATCTAAGTACAACTTTTACCCAAATTTCCTAAATATT  350

seq1  AGCATATATCAAATATTTATTAATGTTAATAAGTTTGTCAAAATGAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATATCAAATATTTATTAATGTTAATAAGTTTGTCAAAATGAAGGA  400

seq1  GTTAATATTAAAATTCAGTCACTCTATAATAAACAGAGTTTACCCAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATTAAAATTCAGTCACTCTATAATAAACAGAGTTTACCCAATAT  450

seq1  TACCTTATCTGAGTGGTCTAAGATTACCAACAATGGTTTACCTGATATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTATCTGAGTGGTCTAAGATTACCAACAATGGTTTACCTGATATTC  500

seq1  ATAATTTTTTCCTTAATTTCCTCTAGTCTCATCAGAATATCTATGTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTTTCCTTAATTTCCTCTAGTCTCATCAGAATATCTATGTCCTC  550

seq1  CATAGTGCCCAGACTGTGGAGTGCTTCAAGATAGCAGAGATCATATTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGCCCAGACTGTGGAGTGCTTCAAGATAGCAGAGATCATATTAGT  600

seq1  CTTTCAAACGCCCATAGTTTAATATGAAATAAAAATAAACCTAAAAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAACGCCCATAGTTTAATATGAAATAAAAATAAACCTAAAAGTTA  650

seq1  GATATTAGAAAACATGCGGAAGTTATTTTGGATTAGAAAGAAAGAAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  GATATTAGAAAACATGCGGAAGTTATTTTGGATTAGAAAGAA--GAACAT  698

seq1  TGTTTATATTTTTAAAAATCAAACCTGGAATGATGCTGTGCCATACTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATATTTTTAAAAATCAAACCTGGAATGATGCTGTGCCATACTCTC  748

seq1  CATACCCAAATACCATCAGGAGAGAGCCTGTCTCTGAGGAATGAAAATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCAAATACCATCAGGAGAGAGCCTGTCTCTGAGGAATGAAAATAC  798

seq1  ACCTGTGAGCACAGCTAGGACCCCCACTTCTGCTGAAATTCCTGGCCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGAGCACAGCTAGGACCCCCACTTCTGCTGAAATTCCTGGCCCAA  848

seq1  GAGGAACTTGCCCAGTGCCATCAGGGCACAGGATCCAAGGAACAGCTGAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAGGAACTTGCCCAGTGCCATCAGGGCACAGGATCCAAGGAACAGCTG-A  897

seq1  GACAGGATACTTCATGTTTCCCTCTGCATCCTGGAGCTGAACCTGTGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGATACTTCATGTTTCCCTCTGCATCCTGGAGCTGAACCTGTGCCA  947

seq1  CAGGTCTCCATACCCAAATTCCTTCTGAAGAGAACTGGTCTCACAGGAGT  1000
      |||||||||||||||||||| |||||| |||| |||||||||||||||||
seq2  CAGGTCTCCATACCCAAATT-CTTCTG-AGAG-ACTGGTCTCACAGGAGT  994

seq1  ACTGACACACAGGCTTGCAGGAGGGACAAGCCACAGTCAGAGAGAGCAAG  1050
      ||||||||||| ||||||||   |||| ||||||||||||||||||| ||
seq2  ACTGACACACA-GCTTGCAG--AGGAC-AGCCACAGTCAGAGAGAGC-AG  1039

seq1  ACCATCTAACACCAGAGAAACCAGATGGCAAGAGCAAGACCACAAACAAC  1100
      | ||||| |||||||||||| ||||||   ||||||||||| ||||||||
seq2  A-CATCT-ACACCAGAGAAATCAGATG--CAGAGCAAGACC-CAAACAAC  1084

seq1  AGAAATCAAGTCTACTTGGCATCATCAGCAACCAGTTCTCCTACCA  1146
       |||||  ||||||||  ||||||||||||| ||| | ||||||||
seq2  GGAAATTCAGTCTACT--GCATCATCAGCAATCAGCTTTCCTACCA  1128


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