BAC Information

Click to search

BAC

Clone NameB6Ng01-267D14
Chromosome11 (Build37)
Map Location 70,048,001 - 70,212,807
singlet/doubletdoublet
Overlap gene0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1
Upstream geneGucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b
Downstream geneArrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267D14.bB6Ng01-267D14.g
ACCGA070413GA070414
length1,0621,182
definitionB6Ng01-267D14.b B6Ng01-267D14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,048,001 - 70,049,043)(70,211,644 - 70,212,807)
sequence
gaattcctacagaggtgaagaatgctccaagcttatcacattggactcat
ctgccagggccctatcctttgcctgctaaactacttttgctggttcctga
ttgttccccccccccagcttttttggggggccatgtttgccattcacacc
tctgtctcactctaggtgggggtcttcacggcactgcctgtgctgtcttc
ctctcgacccaccccagtcctgcccccgccccagcagcacactgtggttt
gtacggcactgtggccacgtccaaaccacactgtggtgttagagcgaggg
tatgggaggcaccgatgagcctggccctgggaggccaccctggagaagca
acacacacacacacacacacacacacacacacacacacacaccgtctagg
gtattgtgatgaagttcttgcaaggtgggacaggagacactggaaagagc
ccctctgcaacccccaggttgtctgataccagttatcaggaaccctggta
atgagttctggccccacagagcaaagtagagtctttgttgcccacaccca
actctcctggctctagcagcacagaaatattggcatggggaagtgagtct
gccaatattggctgtgctgctccaggcagggtggtgagagctactgagaa
ggggccaagccccgagggcgaagcagaggagagggaacggcagctggcag
caccatgttgagagaatctttttttaattataattttctgtataaaaatg
tccatcacacagaaagtcaaagggcgagggcacatgggttatcaggaacg
aggtggatggctccagcagccctctgaccctcttctcaggcagtcttttg
cttagagtcccaggtgatccacaggtcccagggtgaacaatgagggtcag
aaggtggaagggcttcagcaggagaggagaggagcatcagcggaggtggt
gaggaggctagagtccagggttcaggcttgttctgaatagtaaaggaaaa
ccggaacaaagtatgagcaagcgtggaagtatttttactaaagaaaaccc
cctcacctcctc
gaattcactatagagctaggtggtgttaattctttgatttgaatttgtgg
tgcgtgtagctggtagggtaaggtgttccctttagacttggaaaggaaca
gtgagctcatcactgacagccacagtcctctcatgagcatagctgtttgc
agttaaaatgagagatacactacattttacttacaggtcactgaaactaa
tggtggccttttccctattactattcacacgttcatgagctccttttatt
ctaccccaaataaattgtggaccttaggttgaacacttactctaggctct
ctcgtatcaggcagaggtttgctgatagacagtggaaactctgagattga
ttgccttcgttttgctgtctagcctgtccttgtgacccagtcctctatcc
atccccctgggtagtgcattcattttagctgggcctcatttatgctcatc
atgcagagttagtctgtaggcagttctgtttttcagaactgtcattttga
cttcagaaagaaaggtgactgtcacttgcaaaaactagcagagggagccc
agttgtttttatggcaggaaggaggttctttctcccagtaaggaggctta
gaaccagagctcatgtgctgggtctctaccccagaaacatactgttaatg
gctgtcatcaccccatggatgcatcatgtctataggaaagtcaaacctca
ggtagaaggactgctatggacactcggcattgttccatggcctcttcctt
tctcccctcctccaggggaaagctggcttcctttttcctgtctcgattgg
attccctgaaccctcagctccaacaggtaaagggaagggagaggcactaa
gtacggggatctggttctgaggcatcgtttacagcttattcttagctgtt
aattgcacagcattgggacccttctttccattttcttcttcctaacacac
acaattactggcctttcgtactctaagggattctggctcactgttacttg
aacttggttgagcctttggttttctgggcccattagtgggggtggggaga
accatggccctaggctatagtcctcttctgaacaagcctttcttgccctt
ctgcagcttggccctgcgatgtttacttcagattggcctgcgtaagggct
ggcttcccaagtactgtagccacacagagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70048001_70049043
seq2: B6Ng01-267D14.b_44_1105

seq1  GAATTCCTACAGAGGTGAAGAATGCTCCAAGCTTATCACATTGGACTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACAGAGGTGAAGAATGCTCCAAGCTTATCACATTGGACTCAT  50

seq1  CTGCCAGGGCCCTATCCTTTGCCTGCTAAACTACTTTTGCTGGTTCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGGCCCTATCCTTTGCCTGCTAAACTACTTTTGCTGGTTCCTGA  100

seq1  TTGTTCCCCCCCCCCAGCTTTTTTGGGGGGCCATGTTTGCCATTCACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCCCCCCCCAGCTTTTTTGGGGGGCCATGTTTGCCATTCACACC  150

seq1  TCTGTCTCACTCTAGGTGGGGGTCTTCACGGCACTGCCTGTGCTGTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCACTCTAGGTGGGGGTCTTCACGGCACTGCCTGTGCTGTCTTC  200

seq1  CTCTCGACCCACCCCAGTCCTGCCCCCGCCCCAGCAGCACACTGTGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGACCCACCCCAGTCCTGCCCCCGCCCCAGCAGCACACTGTGGTTT  250

seq1  GTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGG  300

seq1  TATGGGAGGCACCGATGAGCCTGGCCCTGGGAGGCCACCCTGGAGAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAGGCACCGATGAGCCTGGCCCTGGGAGGCCACCCTGGAGAAGCA  350

seq1  ACACACACACACACACACACACACACACACACACACACACACCGTCTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACCGTCTAGG  400

seq1  GTATTGTGATGAAGTTCTTGCAAGGTGGGACAGGAGACACTGGAAAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTGATGAAGTTCTTGCAAGGTGGGACAGGAGACACTGGAAAGAGC  450

seq1  CCCTCTGCAACCCCCAGGTTGTCTGATACCAGTTATCAGGAACCCTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCAACCCCCAGGTTGTCTGATACCAGTTATCAGGAACCCTGGTA  500

seq1  ATGAGTTCTGGCCCCACAGAGCAAAGTAGAGTCTTTGTTGCCCACACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCTGGCCCCACAGAGCAAAGTAGAGTCTTTGTTGCCCACACCCA  550

seq1  ACTCTCCTGGCTCTAGCAGCACAGAAATATTGGCATGGGGAAGTGAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCTGGCTCTAGCAGCACAGAAATATTGGCATGGGGAAGTGAGTCT  600

seq1  GCCAATATTGGCTGTGCTGCTCCAGGCAGGGTGGTGAGAGCTACTGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATATTGGCTGTGCTGCTCCAGGCAGGGTGGTGAGAGCTACTGAGAA  650

seq1  GGGGCCAAGCCCCGAGGGCGAAGCAGAGGAGAGGGAACGGCAGCTGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCAAGCCCCGAGGGCGAAGCAGAGGAGAGGGAACGGCAGCTGGCAG  700

seq1  CACCATGTTGAGAGAATC-TTTTTTAATTATAATTTTCTGTATAAAAATG  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CACCATGTTGAGAGAATCTTTTTTTAATTATAATTTTCTGTATAAAAATG  750

seq1  TCCATCACACAG-AAGTCAAAGGGCGAGGGCACAT-GGTTATCAGGAACG  797
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  TCCATCACACAGAAAGTCAAAGGGCGAGGGCACATGGGTTATCAGGAACG  800

seq1  AGGTGGATGGCTCCAGCAGCCCTCTGACCCTC-TCTCAGGCAGTC-CTTG  845
      |||||||||||||||||||||||||||||||| ||||||||||||  |||
seq2  AGGTGGATGGCTCCAGCAGCCCTCTGACCCTCTTCTCAGGCAGTCTTTTG  850

seq1  CTTAGAGTCCCAGGTGATCCACAGGT-CCAGGGTGAACAATGAGGGTCAG  894
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTAGAGTCCCAGGTGATCCACAGGTCCCAGGGTGAACAATGAGGGTCAG  900

seq1  -AGGTGGAAGG--CTCAGCAGGAGAGGAGAGGAGCATCAGCGGAGGTGGT  941
       ||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGAAGGGCTTCAGCAGGAGAGGAGAGGAGCATCAGCGGAGGTGGT  950

seq1  GAGGAGGCCAGAGTCCAGGG-TCAGGC-TGTCTGGAACAG-GAAGGAAAA  988
      |||||||| ||||||||||| |||||| |||   ||| ||  ||||||||
seq2  GAGGAGGCTAGAGTCCAGGGTTCAGGCTTGTTCTGAATAGTAAAGGAAAA  1000

seq1  C--GGACAGAGATGGAGCAAGCGTGG-AGGATTTTTCC--AAGAAAA--C  1031
      |  | ||| ||   |||||||||||| || |||||| |  |||||||  |
seq2  CCGGAACAAAGTATGAGCAAGCGTGGAAGTATTTTTACTAAAGAAAACCC  1050

seq1  CCTCACCTCCTC  1043
      ||||||||||||
seq2  CCTCACCTCCTC  1062

seq1: chr11_70211644_70212807
seq2: B6Ng01-267D14.g_69_1250 (reverse)

seq1  GTTCTCTGTGT-GCTTCAGTCCCTGGGAAAAGCCAGCACCTAACG-AGGG  48
      ||||||||||| ||| |||| | ||||  |||||||| ||| ||| ||| 
seq2  GTTCTCTGTGTGGCTACAGTACTTGGG--AAGCCAGC-CCTTACGCAGGC  47

seq1  CAACCTGGAGTAACACTCGCAGG--CCAGCTGCAGAAGGGC-AGAAAG--  93
      ||| ||| |||||   |||||||  | |||||||||||||| ||||||  
seq2  CAATCTGAAGTAAACATCGCAGGGCCAAGCTGCAGAAGGGCAAGAAAGGC  97

seq1  CTGGTCAGAGAGGGAC--TAGCTT--GGCCATGGGTCTCCC--ACCCCAC  137
       || |||||   ||||  |||| |  |||||||| ||||||   ||||||
seq2  TTGTTCAGAAGAGGACTATAGCCTAGGGCCATGGTTCTCCCCACCCCCAC  147

seq1  TAAT-GGCCCAGAAAAC--AAAGCTCAA-CAAGTTCAAGTAACAGTGAGG  183
      |||| ||||||||||||  || |||||| |||||||||||||||||||| 
seq2  TAATGGGCCCAGAAAACCAAAGGCTCAACCAAGTTCAAGTAACAGTGAGC  197

seq1  CAGAATCCCTAAGAGTACGAAA-GCCAGTAATTGTGTGTGTTAGGAGGAA  232
      |||||||||| ||||||||||| ||||||||||||||||||||||| |||
seq2  CAGAATCCCTTAGAGTACGAAAGGCCAGTAATTGTGTGTGTTAGGAAGAA  247

seq1  GAAATTGAAAAG-AGGGTCCAAATGCTGTGCAATTAACAGCTAAGAATAA  281
      |||| || |||| ||||||| |||||||||||||||||||||||||||||
seq2  GAAAATGGAAAGAAGGGTCCCAATGCTGTGCAATTAACAGCTAAGAATAA  297

seq1  GCTGTAAACGATGCCTCAG-ACCAGATCCCCGTACTTAGTGCCTCTCCCT  330
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTGTAAACGATGCCTCAGAACCAGATCCCCGTACTTAGTGCCTCTCCCT  347

seq1  TCCCTTTACCTGTTGGAGCTGAGGGTTCAGGGAATCCAATCGAGACAGGA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTACCTGTTGGAGCTGAGGGTTCAGGGAATCCAATCGAGACAGGA  397

seq1  AAAAGGAAGCCAGCTTT-CCCTGGAGGAGGGGAGAAAGGAAGAGGCCATG  429
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGCCAGCTTTCCCCTGGAGGAGGGGAGAAAGGAAGAGGCCATG  447

seq1  GAACAATGCCGAGTGTCCATAGCAGTCCTTCTACCTGAGGTTTGACTTTC  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGCCGAGTGTCCATAGCAGTCCTTCTACCTGAGGTTTGACTTTC  497

seq1  CTATAGACATGATGCATCCATGGGGTGATGACAGCCATTAACAGTATGTT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGACATGATGCATCCATGGGGTGATGACAGCCATTAACAGTATGTT  547

seq1  TCTGGGGTAGAGACCCAGCACATGAGCTCTGGTTCTAAGCCTCCTTACTG  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGTAGAGACCCAGCACATGAGCTCTGGTTCTAAGCCTCCTTACTG  597

seq1  GGAGAAAGAACCTCCTTCCTGCCATAAAAACAACTGGGCTCCCTCTGCTA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGAACCTCCTTCCTGCCATAAAAACAACTGGGCTCCCTCTGCTA  647

seq1  GTTTTTGCAAGTGACAGTCACCTTTCTTTCTGAAGTCAAAATGACAGTTC  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGCAAGTGACAGTCACCTTTCTTTCTGAAGTCAAAATGACAGTTC  697

seq1  TGAAAAACAGAACTGCCTACAGACTAACTCTGCATGATGAGCATAAATGA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACAGAACTGCCTACAGACTAACTCTGCATGATGAGCATAAATGA  747

seq1  GGCCCAGCTAAAATGAATGCACTACCCAGGGGGATGGATAGAGGACTGGG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCTAAAATGAATGCACTACCCAGGGGGATGGATAGAGGACTGGG  797

seq1  TCACAAGGACAGGCTAGACAGCAAAACGAAGGCAATCAATCTCAGAGTTT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGGACAGGCTAGACAGCAAAACGAAGGCAATCAATCTCAGAGTTT  847

seq1  CCACTGTCTATCAGCAAACCTCTGCCTGATACGAGAGAGCCTAGAGTAAG  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTCTATCAGCAAACCTCTGCCTGATACGAGAGAGCCTAGAGTAAG  897

seq1  TGTTCAACCTAAGGTCCACAATTTATTTGGGGTAGAATAAAAGGAGCTCA  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACCTAAGGTCCACAATTTATTTGGGGTAGAATAAAAGGAGCTCA  947

seq1  TGAACGTGTGAATAGTAATAGGGAAAAGGCCACCATTAGTTTCAGTGACC  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACGTGTGAATAGTAATAGGGAAAAGGCCACCATTAGTTTCAGTGACC  997

seq1  TGTAAGTAAAATGTAGTGTATCTCTCATTTTAACTGCAAACAGCTATGCT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTAAAATGTAGTGTATCTCTCATTTTAACTGCAAACAGCTATGCT  1047

seq1  CATGAGAGGACTGTGGCTGTCAGTGATGAGCTCACTGTTCCTTTCCAAGT  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAGGACTGTGGCTGTCAGTGATGAGCTCACTGTTCCTTTCCAAGT  1097

seq1  CTAAAGGGAACACCTTACCCTACCAGCTACACGCACCACAAATTCAAATC  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGGAACACCTTACCCTACCAGCTACACGCACCACAAATTCAAATC  1147

seq1  AAAGAATTAACACCACCTAGCTCTATAGTGAATTC  1164
      |||||||||||||||||||||||||||||||||||
seq2  AAAGAATTAACACCACCTAGCTCTATAGTGAATTC  1182