BAC Information

Click to search

BAC

Clone NameB6Ng01-268J22
Chromosome11 (Build37)
Map Location 110,864,482 - 111,018,010
singlet/doubletdoublet
Overlap geneKcnj16, Kcnj2
Upstream geneAbca8a, Abca9, Abca6, Abca5, Map2k6, LOC100041523
Downstream geneLOC667003, LOC100041539, LOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268J22.bB6Ng01-268J22.g
ACCGA071431GA071432
length810401
definitionB6Ng01-268J22.b B6Ng01-268J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,864,482 - 110,865,291)(111,017,604 - 111,018,010)
sequence
gaattcttcattctctaattttgtctgacagtgtctcctcagttatctgt
tagggtgtaaatttgtttttatttaaatgatgctaggctgacactgacag
agaaaaccctaataagtccagctaaaacattattgaatatagctagaagg
tatacaatacaatttgagaatgtccgtggagaagaaaggtgattatcttc
ttagtttagtgaaaatggccttggctagtcacagaaaatctcagattatg
tggaggaggactgagatgttaattgatttacttcttcgttgaaactcaca
agtaaagatgaatgaatcagaggcttgatagcccggggatctaggataaa
actaaacatgactggcaaagaaatggtcaatgaaatgattcctaatgata
tcctgctatactcattcactggcacataccacaatcatcatcagagaggc
tagatccagcaactgatgggggtagatgcagagatccacagccaccaaag
attaaactgagttcagggtaccccaaagaagaaggggaaaaagaaccgta
agatccagagaggttgaggcaccccaagaacacgccccacaggatccact
aagcaaggctcacgggggttaacacaaattagaccaacaaccaaggagcc
tataagggtctgaactaagtactgggcatatatgttatggttgtttagtg
tttttattgaactcataacagtggacatgtgagggtgtctctgactcttt
tgcctgcttttgggactccttttctcctaccaggtcttagtgtaacatgt
tatgttaatg
aactcttcacatgattttcaatggtcatccaattcttacaatgatgcgtt
gtgatttctttatccatttattttatgaactccctgcaaagcccatacac
atttggtgcttacagattagaatggacagattccccaaattaaaaaaaaa
aaacaatgcttttgagttgaagtcttcattctccctcttatagtcatatc
atttattattaaaactcatatcctgaattttgttttactttgtttttgaa
aggctgagcaaactaaccctggttctaaggctatatatgccaactctgta
tgccctctatagcttacaataggaagaatagagaaggatgcctagtctaa
gatgggggagaggtaggtaaaagtatttgtggttaatatttaggattttg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_110864482_110865291
seq2: B6Ng01-268J22.b_50_859

seq1  GAATTCTTCATTCTCTAATTTTGTCTGACAGTGTCTCCTCAGTTATCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTCTCTAATTTTGTCTGACAGTGTCTCCTCAGTTATCTGT  50

seq1  TAGGGTGTAAATTTGTTTTTATTTAAATGATGCTAGGCTGACACTGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGTAAATTTGTTTTTATTTAAATGATGCTAGGCTGACACTGACAG  100

seq1  AGAAAACCCTAATAAGTCCAGCTAAAACATTATTGAATATAGCTAGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCCTAATAAGTCCAGCTAAAACATTATTGAATATAGCTAGAAGG  150

seq1  TATACAATACAATTTGAGAATGTCCGTGGAGAAGAAAGGTGATTATCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATACAATTTGAGAATGTCCGTGGAGAAGAAAGGTGATTATCTTC  200

seq1  TTAGTTTAGTGAAAATGGCCTTGGCTAGTCACAGAAAATCTCAGATTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTAGTGAAAATGGCCTTGGCTAGTCACAGAAAATCTCAGATTATG  250

seq1  TGGAGGAGGACTGAGATGTTAATTGATTTACTTCTTCGTTGAAACTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGGACTGAGATGTTAATTGATTTACTTCTTCGTTGAAACTCACA  300

seq1  AGTAAAGATGAATGAATCAGAGGCTTGATAGCCCGGGGATCTAGGATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGATGAATGAATCAGAGGCTTGATAGCCCGGGGATCTAGGATAAA  350

seq1  ACTAAACATGACTGGCAAAGAAATGGTCAATGAAATGATTCCTAATGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACATGACTGGCAAAGAAATGGTCAATGAAATGATTCCTAATGATA  400

seq1  TCCTGCTATACTCATTCACTGGCACATACCACAATCATCATCAGAGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTATACTCATTCACTGGCACATACCACAATCATCATCAGAGAGGC  450

seq1  TAGATCCAGCAACTGATGGGGGTAGATGCAGAGATCCACAGCCACCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCAGCAACTGATGGGGGTAGATGCAGAGATCCACAGCCACCAAAG  500

seq1  ATTAAACTGAGTTCAGGGTACCCCAAAGAAGAAGGGGAAAAAGAACCGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACTGAGTTCAGGGTACCCCAAAGAAGAAGGGGAAAAAGAACCGTA  550

seq1  AGATCCAGAGAGGTTGAGGCACCCCAAGAACACGCCCCACAGGATCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGAGAGGTTGAGGCACCCCAAGAACACGCCCCACAGGATCCACT  600

seq1  AAGCAAGGCTCACGGGGGTTAACACAAATTAGACCAACAACCAAGGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGGCTCACGGGGGTTAACACAAATTAGACCAACAACCAAGGAGCC  650

seq1  TATAAGGGTCTGAACTAAGTACTGGGCATATATGTTATGGTTGTTTAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGGTCTGAACTAAGTACTGGGCATATATGTTATGGTTGTTTAGTG  700

seq1  TTTTTATTGAACTCATAACAGTGGACATGTGAGGGTGTCTCTGACTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTGAACTCATAACAGTGGACATGTGAGGGTGTCTCTGACTCTTT  750

seq1  TGCCTGCTTTTGGGACTCCTTTTCTCCTACCAGGTCTTAGTGTAACATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTTTTGGGACTCCTTTTCTCCTACCAGGTCTTAGTGTAACATGT  800

seq1  TATGTTAATG  810
      ||||||||||
seq2  TATGTTAATG  810

seq1: chr11_111017604_111018010
seq2: B6Ng01-268J22.g_66_472 (reverse)

seq1  ACAAAATCCTAAATATTAACCACAAATACTTTTACCTACCTCTCCCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCCTAAATATTAACCACAAATACTTTTACCTACCTCTCCCCCAT  50

seq1  CTTAGACTAGGCATCCTTCTCTATTCTTCCTATTGTAAGCTATAGAGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACTAGGCATCCTTCTCTATTCTTCCTATTGTAAGCTATAGAGGGC  100

seq1  ATACAGAGTTGGCATATATAGCCTTAGAACCAGGGTTAGTTTGCTCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGTTGGCATATATAGCCTTAGAACCAGGGTTAGTTTGCTCAGCC  150

seq1  TTTCAAAAACAAAGTAAAACAAAATTCAGGATATGAGTTTTAATAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAACAAAGTAAAACAAAATTCAGGATATGAGTTTTAATAATAAA  200

seq1  TGATATGACTATAAGAGGGAGAATGAAGACTTCAACTCAAAAGCATTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGACTATAAGAGGGAGAATGAAGACTTCAACTCAAAAGCATTGTT  250

seq1  TTTTTTTTTTAATTTGGGGAATCTGTCCATTCTAATCTGTAAGCACCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAATTTGGGGAATCTGTCCATTCTAATCTGTAAGCACCAAA  300

seq1  TGTGTATGGGCTTTGCAGGGAGTTCATAAAATAAATGGATAAAGAAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGGGCTTTGCAGGGAGTTCATAAAATAAATGGATAAAGAAATCA  350

seq1  CAACGCATCATTGTAAGAATTGGATGACCATTGAAAATCATGTGAAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCATCATTGTAAGAATTGGATGACCATTGAAAATCATGTGAAGAGT  400

seq1  TGAATTC  407
      |||||||
seq2  TGAATTC  407