BAC Information

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BAC

Clone NameB6Ng01-269M02
Chromosome11 (Build37)
Map Location 46,554,435 - 46,726,496
singlet/doubletdoublet
Overlap geneHavcr1, Timd4
Upstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678
Downstream geneSgcd, LOC628753, LOC100039647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269M02.bB6Ng01-269M02.g
ACCGA072267GA072268
length1,1881,054
definitionB6Ng01-269M02.b B6Ng01-269M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,725,304 - 46,726,496)(46,554,435 - 46,555,494)
sequence
gaattctatgattcacttgcttgggttcttatctccataattaaaatgtc
aaattggtggctgcaaaatgtaacagcaggttagacgagatgctgtattt
cattttctcatagcagttcggaatatgtgcagcctgtgcacactgtgatt
tttctgtggtgtctgggagcaatatttcccccttctgtgtcatcatgaac
ctgccatcaggcatccattagctaagacagaactcaggattcctgaaggg
agatgggctactggttcatgccagcttgtctcacttgaattctaaacact
taggacagaaactaagacatattctttccacatacaccacacagtgtcta
gtcaaatgtaaaatctgcatggctaaccacatgccgtttattgtagaagg
taatatattaggccacaaaacaaatcttcacccattcaaaagtttgaagt
aacatactatatcatttctgatgataatcaaatgaaaatggaagttacca
tcagaagaaactttcttttcaccttttttaattgaacttacaacactctg
tgtgttagtagttgagtagtctagcactgagctactgtccaggccgagaa
actttagaaaaacacacaaatatgtggagaccacacatcacacctttgag
caaagaaagcaaagagatgttacatggttcaaaacaaagtgaaaaaaaat
agtatattatctataatacatagaactgagcgaaattcataccagtacat
acatatatccaagaggaaaaaagtaagacaatgccatcaaacgatccatg
attctgttagccaaaggctgcaaggatgatttgacatgtgcaaaccaaat
caagacaattatttgaacttctagccaaaaaaaaaaaaaaaagctagaat
catctcagaagtaatatttgacagaattcaacagtctgtcataatcaagg
ctctgaacagctaaggaataaaaggaatgtactttcaacataaaaacaag
ggctataatataacaaatgcagagcacacacacacacacaccactacaca
ctcacacacactctgctgtgtctgcaagaataacactgggtcactcacga
gtcaatagcagtaggttttggctcatttagcattttattacctattcatc
cttagtctgcagcctagtgtagtaattacccaaggtct
gaattctttctgtgttgggggagatatttagaggcaagcttgagaacata
tttttaaatgtgtgtatttatgtcaagcagaacaggtgcagccctcctcc
agaaagcagcctcatcctcttcggccattgcatgtctgatcggtacttca
catactttggcatgtgctttcatgccccaaagaatcctcccccaagcctc
tcccccacctacactgtaagtttttaaaatgagccacgagtcagacagtg
taggaaatacatcatagtgaacactcatcaggtttttacaacgcagttgt
gaaacctcactggcctagatctccagtcttcccctgagttctgggattcc
aagcataaagctctgtgactggttcttactgtcactgtctgtgagacagg
gcctcttgtgtcaggatttcctcagaatagaagctttgctgaggatgggc
ttgaacttctggtcctcccttccccagtcgctgtgatttctggcactaac
tctagaccctgtttatctgatgacaaacattgtactcagggctctggctt
gcttagcaaggtgtctaccatctaagctgtaccccagcttctagtctgct
catttagtcatgaaaataccaaagtcccaaagcaagttgacaaacactta
taatcctaaccctggcaattccagtccttgggagacagacacagtagcac
tggttcaagcccaactttgctacagggtcagaggctagccttgctacttg
agagtttgaatttaaataaataaataaatagagagagagagagagagaga
gagaggtccccagtggaggagtcagagaaaggactgaaggagctgaaggg
ctttgcaaccccataagaagaacacaatgtcagccaaccagaccctccag
agctcccagggactaaaccaccaaccaaagactacatacacaggagggag
gggacccatggctccagccgtatgtagcaaagatggcccttgtcagcatc
aattggggagagggccttggtcctgtgagattcaatgctcagtataggga
atgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_46725304_46726496
seq2: B6Ng01-269M02.b_47_1234 (reverse)

seq1  AGACTTTGGGTAATTTACTTACATTAAGCCTGCAAGAACTAAGGAAGGGA  50
      |||| |||||||| |||| |||| | || |||||   ||||||| | | |
seq2  AGACCTTGGGTAA-TTAC-TACACT-AGGCTGCA--GACTAAGG-ATGAA  44

seq1  TA-GTAATAAAATGCT-AATGAGGCAAAAACTAACTGCTAATGACTTCGG  98
      || ||||||||||||| |||||| ||||| || ||||||| |||||   |
seq2  TAGGTAATAAAATGCTAAATGAGCCAAAACCT-ACTGCTATTGACT--CG  91

seq1  TGAGTGACCCAAGTGTTAT--CTGCAGACACCAGCCAGGAGTGTGTGTGT  146
      |||||||||| ||||||||   |||||||| ||||   ||||||||||| 
seq2  TGAGTGACCC-AGTGTTATTCTTGCAGACA-CAGC--AGAGTGTGTGTGA  137

seq1  GTGTGT-GTGTGTGTGTTGTGTGTGTTGGCTCTGCATTTGTTATA-TATA  194
      |||||| ||| ||||| |||||||||  ||||||||||||||||| ||||
seq2  GTGTGTAGTG-GTGTG-TGTGTGTGTGTGCTCTGCATTTGTTATATTATA  185

seq1  GCCCTTGTTTTTATGTTG-AAGTACATTCCTTTTATTCC-TAGCTGTTCA  242
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  GCCCTTGTTTTTATGTTGAAAGTACATTCCTTTTATTCCTTAGCTGTTCA  235

seq1  GAGCCTTGATTATGACAGACTGTTGAATTCTGTCAAATATTACTTCTGAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTGATTATGACAGACTGTTGAATTCTGTCAAATATTACTTCTGAG  285

seq1  ATGATTCTAGC--TTTTTTTTTTTTTTGGCTAGAAGTTCAAATAATTGTC  340
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTAGCTTTTTTTTTTTTTTTTGGCTAGAAGTTCAAATAATTGTC  335

seq1  TTGATTTGGTTTGCACATGTCAAATCATCCTTGCAGCCTTTGGCTAACAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTGGTTTGCACATGTCAAATCATCCTTGCAGCCTTTGGCTAACAG  385

seq1  AATCATGGATCGTTTGATGGCATTGTCTTACTTTTTTCCTCTTGGATATA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGGATCGTTTGATGGCATTGTCTTACTTTTTTCCTCTTGGATATA  435

seq1  TGTATGTACTGGTATGAATTTCGCTCAGTTCTATGTATTATAGATAATAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTACTGGTATGAATTTCGCTCAGTTCTATGTATTATAGATAATAT  485

seq1  ACTATTTTTTTTCACTTTGTTTTGAACCATGTAACATCTCTTTGCTTTCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTTTTTCACTTTGTTTTGAACCATGTAACATCTCTTTGCTTTCT  535

seq1  TTGCTCAAAGGTGTGATGTGTGGTCTCCACATATTTGTGTGTTTTTCTAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAAAGGTGTGATGTGTGGTCTCCACATATTTGTGTGTTTTTCTAA  585

seq1  AGTTTCTCGGCCTGGACAGTAGCTCAGTGCTAGACTACTCAACTACTAAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCGGCCTGGACAGTAGCTCAGTGCTAGACTACTCAACTACTAAC  635

seq1  ACACAGAGTGTTGTAAGTTCAATTAAAAAAGGTGAAAAGAAAGTTTCTTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGTGTTGTAAGTTCAATTAAAAAAGGTGAAAAGAAAGTTTCTTC  685

seq1  TGATGGTAACTTCCATTTTCATTTGATTATCATCAGAAATGATATAGTAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTAACTTCCATTTTCATTTGATTATCATCAGAAATGATATAGTAT  735

seq1  GTTACTTCAAACTTTTGAATGGGTGAAGATTTGTTTTGTGGCCTAATATA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTCAAACTTTTGAATGGGTGAAGATTTGTTTTGTGGCCTAATATA  785

seq1  TTACCTTCTACAATAAACGGCATGTGGTTAGCCATGCAGATTTTACATTT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTCTACAATAAACGGCATGTGGTTAGCCATGCAGATTTTACATTT  835

seq1  GACTAGACACTGTGTGGTGTATGTGGAAAGAATATGTCTTAGTTTCTGTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGACACTGTGTGGTGTATGTGGAAAGAATATGTCTTAGTTTCTGTC  885

seq1  CTAAGTGTTTAGAATTCAAGTGAGACAAGCTGGCATGAACCAGTAGCCCA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGTTTAGAATTCAAGTGAGACAAGCTGGCATGAACCAGTAGCCCA  935

seq1  TCTCCCTTCAGGAATCCTGAGTTCTGTCTTAGCTAATGGATGCCTGATGG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTCAGGAATCCTGAGTTCTGTCTTAGCTAATGGATGCCTGATGG  985

seq1  CAGGTTCATGATGACACAGAAGGGGGAAATATTGCTCCCAGACACCACAG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCATGATGACACAGAAGGGGGAAATATTGCTCCCAGACACCACAG  1035

seq1  AAAAATCACAGTGTGCACAGGCTGCACATATTCCGAACTGCTATGAGAAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCACAGTGTGCACAGGCTGCACATATTCCGAACTGCTATGAGAAA  1085

seq1  ATGAAATACAGCATCTCGTCTAACCTGCTGTTACATTTTGCAGCCACCAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATACAGCATCTCGTCTAACCTGCTGTTACATTTTGCAGCCACCAA  1135

seq1  TTTGACATTTTAATTATGGAGATAAGAACCCAAGCAAGTGAATCATAGAA  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATTTTAATTATGGAGATAAGAACCCAAGCAAGTGAATCATAGAA  1185

seq1  TTC  1193
      |||
seq2  TTC  1188

seq1: chr11_46554435_46555494
seq2: B6Ng01-269M02.g_71_1124

seq1  GAATTCTTTCTGTGTTGGGGGAGATATTTAGAGGCAAGCTTGAGAACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGTGTTGGGGGAGATATTTAGAGGCAAGCTTGAGAACATA  50

seq1  TTTTTAAATGTGTGTATTTATGTCAAGCAGAACAGGTGCAGCCCTCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATGTGTGTATTTATGTCAAGCAGAACAGGTGCAGCCCTCCTCC  100

seq1  AGAAAGCAGCCTCATCCTCTTCGGCCATTGCATGTCTGATCGGTACTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAGCCTCATCCTCTTCGGCCATTGCATGTCTGATCGGTACTTCA  150

seq1  CATACTTTGGCATGTGCTTTCATGCCCCAAAGAATCCTCCCCCAAGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTTGGCATGTGCTTTCATGCCCCAAAGAATCCTCCCCCAAGCCTC  200

seq1  TCCCCCACCTACACTGTAAGTTTTTAAAATGAGCCACGAGTCAGACAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACCTACACTGTAAGTTTTTAAAATGAGCCACGAGTCAGACAGTG  250

seq1  TAGGAAATACATCATAGTGAACACTCATCAGGTTTTTACAACGCAGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATACATCATAGTGAACACTCATCAGGTTTTTACAACGCAGTTGT  300

seq1  GAAACCTCACTGGCCTAGATCTCCAGTCTTCCCCTGAGTTCTGGGATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTCACTGGCCTAGATCTCCAGTCTTCCCCTGAGTTCTGGGATTCC  350

seq1  AAGCATAAAGCTCTGTGACTGGTTCTTACTGTCACTGTCTGTGAGACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAAAGCTCTGTGACTGGTTCTTACTGTCACTGTCTGTGAGACAGG  400

seq1  GCCTCTTGTGTCAGGATTTCCTCAGAATAGAAGCTTTGCTGAGGATGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTGTGTCAGGATTTCCTCAGAATAGAAGCTTTGCTGAGGATGGGC  450

seq1  TTGAACTTCTGGTCCTCCCTTCCCCAGTCGCTGTGATTTCTGGCACTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTCTGGTCCTCCCTTCCCCAGTCGCTGTGATTTCTGGCACTAAC  500

seq1  TCTAGACCCTGTTTATCTGATGACAAACATTGTACTCAGGGCTCTGGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACCCTGTTTATCTGATGACAAACATTGTACTCAGGGCTCTGGCTT  550

seq1  GCTTAGCAAGGTGTCTACCATCTAAGCTGTACCCCAGCTTCTAGTCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCAAGGTGTCTACCATCTAAGCTGTACCCCAGCTTCTAGTCTGCT  600

seq1  CATTTAGTCATGAAAATACCAAAGTCCCAAAGCAAGTTGACAAACACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTCATGAAAATACCAAAGTCCCAAAGCAAGTTGACAAACACTTA  650

seq1  TAATCCTAACCCTGGCAATTCCAGTCCTTGGGAGACAGACACAGTAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTAACCCTGGCAATTCCAGTCCTTGGGAGACAGACACAGTAGCAC  700

seq1  TGGTTCAAGCCCAACTTTGCTACAGGGTCAGAGGCTAGCCTTGCTACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAAGCCCAACTTTGCTACAGGGTCAGAGGCTAGCCTTGCTACTTG  750

seq1  AGAGTTTGAATTTAAATAAATAAATAAATAGAGAGAGAGAGAGAGAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGAATTTAAATAAATAAATAAATAGAGAGAGAGAGAGAGAGAGA  800

seq1  GAGAGGTCCCCAGTGGAGGAGTCAGAGAAAGGACTGAAGGAGCTGAAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTCCCCAGTGGAGGAGTCAGAGAAAGGACTGAAGGAGCTGAAGGG  850

seq1  CTTTGCAACCCCATAAGAAGAACAACAATGTCAGCCAACCAGACCCTCCA  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTTGCAACCCCATAAGAAGAAC-ACAATGTCAGCCAACCAGACCCTCCA  899

seq1  GAGCTCCCAGGGACTAAACCACCAACCAAAGACTACATACACAGGGAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGCTCCCAGGGACTAAACCACCAACCAAAGACTACATACACA-GGAGGG  948

seq1  A-GGGACCCATGGCTCCAGCCGTATGTAGCAAAGGATGG-CCTTGTCAGG  998
      | ||||||||||||||||||||||||||||||| ||||| |||||||| |
seq2  AGGGGACCCATGGCTCCAGCCGTATGTAGCAAA-GATGGCCCTTGTCA-G  996

seq1  CATCAATGGGAGGAGGGGCCCTTGGCCCTGTGAAGATTCAATGCCCCAGT  1048
      ||||||| || |||| || |||||| |||||| |||||||||| | ||||
seq2  CATCAATTGG-GGAGAGGGCCTTGGTCCTGTG-AGATTCAATG-CTCAGT  1043

seq1  ATAGGGGAATGC  1060
      ||| ||||||||
seq2  ATA-GGGAATGC  1054