BAC Information

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BAC

Clone NameB6Ng01-271C09
Chromosome11 (Build37)
Map Location 104,134,363 - 104,288,000
singlet/doubletdoublet
Overlap geneMapt, 1700081L11Rik
Upstream geneArhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik
Downstream geneCdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271C09.bB6Ng01-271C09.g
ACCGA073309GA073310
length1,155982
definitionB6Ng01-271C09.b B6Ng01-271C09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,134,363 - 104,135,506)(104,287,024 - 104,288,000)
sequence
gaattctgttcctgctgccaccacttagaaggaagggggtgcgggcaacc
agatatggtggcacgcatctgtactctgagcacttgagaggctcaggaag
ggttcagagccaacctgggctacatagtgatgccctgctcccacccctcc
gctgaagagagaactcaaacctcagtgcccttgacccagggggtcatttc
ttcctttccgtgtgtttgtgatggacactgtttattttctgtctgtccaa
ggctacaccaagttcagggcattcattacagagggacaactgctccttag
ccacagctcctgacactgccctgcctccacacccttcatgacatgtcctc
agactcaaaaaataggaatgaagacatctaaaaaaattgctaccttccct
cccccaattctcctcttccttccccagcttccttgttatccccatctaat
gaaatgtcttccccaaaaagagccaatttcggcctgtttcctgtggcctt
tcaagcccctgcctcccccacggcttgtgggcaaatccccagcaagctga
gactccggtggaacaaagttccagactcagtttgtccccccagatctgct
tcctctttcctgtgctcacccaaggacagcactaggagtgaggggccagt
accctaatcttccccggggttgccctttaccctacctctgctgaaaccac
cccagaggtcccccacttcccctcccctccaactgacccacccggccctt
ggatgccatctctcacctctatctaagcagagttcacgttagccctgaat
gagtctcttctggataatccttatcgtctctattttctttattatttctt
tattttttatttatattagtacactgtagatgtcttcagacacacaccag
aagaaggcatcggaccccattacagatggtggtgagccaccatgtggttg
ctgggaattgaactcaggacctctggaagagcagtcagtgctcttaaccg
ctgagccattctcttccagccccttctctagttttcttttttgaagtcct
cctttatttgggtgtccatggtgtccatggtggaacaaggtctcttcagg
ctacttgcagttgcaagccacctaatgtgcacacttcttcacaagccagt
atttt
gaattccatcccctgaatgtactgtggaaaggaagaaccagtttttaaaa
gttattctctgatcgtcacacacataagatgtaccaccacaaccaacacc
cctgccaacaaccaaataatttggggagggcatcttttgagatctccagg
ggtgcaagagattgtgcttttagggatagttggtgtagttctttatatag
gtttccctttgtttccagacccaaatagatgaatcaggaatgaagaagaa
gcagttaattgaggtatgtcattaatgggttagggtttaagaaaatgaag
caggaggagaaaagaaaaaagtacctcgaagaagaaagtcaattctgagg
tttcaaggactagaggattagaaagttaatgcagcccagaaaaccttttt
ctgagagttagtggtcctcatgctagtagttgttgctaaggaagtgaatt
gaggagaaggcaaaaggaagagatgtttggctataccagcattttaggag
gattgcaaagaagagaataaaatagttccaagaatatcaggaaagaaaat
ttcatagaagtccacactacctattgcttagaaaaaagtcagaatatgac
tgttggttgaataactggttagctttcctagagtgataggaaattctaga
gagtggaatataaaggcaactgtaactattattttgaagtgctttgggat
gggggaagtgagagagttatgttggactcttaaagacacagatttactct
gaaaatgaagagcccagtagaaaagatacatgctgaatgaaagaaaactg
atactacagcatgattatagttagcctagtaatacaatataaatttgtaa
aagaagaaactgaatgaaaactagattcctgggcagaaataatatcctta
ggtgccttattcagttattaatagaagcatgtgtggtccccagtcctccc
tcccccaccagggttcttccttgaatccctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104134363_104135506
seq2: B6Ng01-271C09.b_45_1199

seq1  GAATTCTGTTCCTGCTGCCACCACTTAGAAGGAAGGGGGTGCGGGCAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCCTGCTGCCACCACTTAGAAGGAAGGGGGTGCGGGCAACC  50

seq1  AGATATGGTGGCACGCATCTGTACTCTGAGCACTTGAGAGGCTCAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGGTGGCACGCATCTGTACTCTGAGCACTTGAGAGGCTCAGGAAG  100

seq1  GGTTCAGAGCCAACCTGGGCTACATAGTGATGCCCTGCTCCCACCCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGAGCCAACCTGGGCTACATAGTGATGCCCTGCTCCCACCCCTCC  150

seq1  GCTGAAGAGAGAACTCAAACCTCAGTGCCCTTGACCCAGGGGGTCATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGAGAGAACTCAAACCTCAGTGCCCTTGACCCAGGGGGTCATTTC  200

seq1  TTCCTTTCCGTGTGTTTGTGATGGACACTGTTTATTTTCTGTCTGTCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCCGTGTGTTTGTGATGGACACTGTTTATTTTCTGTCTGTCCAA  250

seq1  GGCTACACCAAGTTCAGGGCATTCATTACAGAGGGACAACTGCTCCTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACACCAAGTTCAGGGCATTCATTACAGAGGGACAACTGCTCCTTAG  300

seq1  CCACAGCTCCTGACACTGCCCTGCCTCCACACCCTTCATGACATGTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTCCTGACACTGCCCTGCCTCCACACCCTTCATGACATGTCCTC  350

seq1  AGACTCAAAAAATAGGAATGAAGACATCTAAAAAAATTGCTACCTTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAAAAAATAGGAATGAAGACATCTAAAAAAATTGCTACCTTCCCT  400

seq1  CCCCCAATTCTCCTCTTCCTTCCCCAGCTTCCTTGTTATCCCCATCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAATTCTCCTCTTCCTTCCCCAGCTTCCTTGTTATCCCCATCTAAT  450

seq1  GAAATGTCTTCCCCAAAAAGAGCCAATTTCGGCCTGTTTCCTGTGGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTCTTCCCCAAAAAGAGCCAATTTCGGCCTGTTTCCTGTGGCCTT  500

seq1  TCAAGCCCCTGCCTCCCCCACGGCTTGTGGGCAAATCCCCAGCAAGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCCCTGCCTCCCCCACGGCTTGTGGGCAAATCCCCAGCAAGCTGA  550

seq1  GACTCCGGTGGAACAAAGTTCCAGACTCAGTTTGTCCCCCCAGATCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCGGTGGAACAAAGTTCCAGACTCAGTTTGTCCCCCCAGATCTGCT  600

seq1  TCCTCTTTCCTGTGCTCACCCAAGGACAGCACTAGGAGTGAGGGGCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTCCTGTGCTCACCCAAGGACAGCACTAGGAGTGAGGGGCCAGT  650

seq1  ACCCTAATCTTCCCCGGGGTTGCCCTTTACCCTACCTCTGCTGAAACCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAATCTTCCCCGGGGTTGCCCTTTACCCTACCTCTGCTGAAACCAC  700

seq1  CCCAGAGGTCCCCCACTTCCCCTCCCCTCCAACTGACCCACCCGGCCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGTCCCCCACTTCCCCTCCCCTCCAACTGACCCACCCGGCCCTT  750

seq1  GGATGCCATCTCTCACCTCTATCTAAGCAGAGTTCAGGTTAGCCCTGAAT  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGATGCCATCTCTCACCTCTATCTAAGCAGAGTTCACGTTAGCCCTGAAT  800

seq1  GAGTCTCTTCTGGATAATCCTTATCGTCTCTATTTTCTTTATTATTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCTTCTGGATAATCCTTATCGTCTCTATTTTCTTTATTATTTCTT  850

seq1  TATTTTTTATTTATATTAGTACACTGTAGATGTCTTCAGACACACACCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTATTTATATTAGTACACTGTAGATGTCTTCAGACACACACCAG  900

seq1  AAGAAGGCATCGGACCCCATTACAGATGGTGGTGAGCCACCATGTGGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGCATCGGACCCCATTACAGATGGTGGTGAGCCACCATGTGGTTG  950

seq1  CTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCG  1000

seq1  CTGAGCCA-TCTC-TCCAGCCCCTTCTCTATTTTTTTTTTTTTTTTTGAA  1048
      |||||||| |||| ||||||||||||||||      |||| |||||||||
seq2  CTGAGCCATTCTCTTCCAGCCCCTTCTCTA-----GTTTTCTTTTTTGAA  1045

seq1  GT-CTCCTT--ATTGGGTGTCCAT-GTGT-CATGGTG--AC-AGGTCTCT  1090
      || ||||||   |||||||||||| |||| |||||||  || ||||||||
seq2  GTCCTCCTTTATTTGGGTGTCCATGGTGTCCATGGTGGAACAAGGTCTCT  1095

seq1  TCAGGCTAC-TGCAGTTGC-AGCCA-CTAATGTGC-CACCTC-TCACAAG  1135
      ||||||||| ||||||||| ||||| ||||||||| ||| || |||||||
seq2  TCAGGCTACTTGCAGTTGCAAGCCACCTAATGTGCACACTTCTTCACAAG  1145

seq1  -CAGTATTTT  1144
       |||||||||
seq2  CCAGTATTTT  1155

seq1: chr11_104287024_104288000
seq2: B6Ng01-271C09.g_66_1047 (reverse)

seq1  CCAGGGCTACAAGGAGAAACCCTGGTTGGGGAGGGAGGACTGGGGGACAC  50
      |||||| | ||||||  ||||||||| ||||||||||||||||||  |||
seq2  CCAGGGATTCAAGGAAGAACCCTGGTGGGGGAGGGAGGACTGGGGACCAC  50

seq1  AACTGC-TCTATTATTAACTGAATATGGC-CCTAAGGTTATTTTTTCTGC  98
      |  ||| ||||||| |||||||||| ||| ||||||| |||| |||||||
seq2  ACATGCTTCTATTAATAACTGAATAAGGCACCTAAGGATATTATTTCTGC  100

seq1  CCAGGAATCTAGTTTTCA-TCAGTTTCTTC-TTTACAAATTTATATTGTA  146
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  CCAGGAATCTAGTTTTCATTCAGTTTCTTCTTTTACAAATTTATATTGTA  150

seq1  TTACTAGGCTAACTAT-ATCATGCTGTAGTATCAGTTTTCTTTCATTCAG  195
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTACTAGGCTAACTATAATCATGCTGTAGTATCAGTTTTCTTTCATTCAG  200

seq1  CATGTATCTTTTCTACTGGGCTCTTCATTTTCAGAGTAAATCTGTGTCTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATCTTTTCTACTGGGCTCTTCATTTTCAGAGTAAATCTGTGTCTT  250

seq1  TAAGAGTCCAACATAACTCTCTCACTTCCCCCATCCCAAAGCACTTCAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTCCAACATAACTCTCTCACTTCCCCCATCCCAAAGCACTTCAAA  300

seq1  ATAATAGTTACAGTTGCCTTTATATTCCACTCTCTAGAATTTCCTATCAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGTTACAGTTGCCTTTATATTCCACTCTCTAGAATTTCCTATCAC  350

seq1  TCTAGGAAAGCTAACCAGTTATTCAACCAACAGTCATATTCTGACTTTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAAAGCTAACCAGTTATTCAACCAACAGTCATATTCTGACTTTTT  400

seq1  TCTAAGCAATAGGTAGTGTGGACTTCTATGAAATTTTCTTTCCTGATATT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCAATAGGTAGTGTGGACTTCTATGAAATTTTCTTTCCTGATATT  450

seq1  CTTGGAACTATTTTATTCTCTTCTTTGCAATCCTCCTAAAATGCTGGTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAACTATTTTATTCTCTTCTTTGCAATCCTCCTAAAATGCTGGTAT  500

seq1  AGCCAAACATCTCTTCCTTTTGCCTTCTCCTCAATTCACTTCCTTAGCAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACATCTCTTCCTTTTGCCTTCTCCTCAATTCACTTCCTTAGCAA  550

seq1  CAACTACTAGCATGAGGACCACTAACTCTCAGAAAAAGGTTTTCTGGGCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACTAGCATGAGGACCACTAACTCTCAGAAAAAGGTTTTCTGGGCT  600

seq1  GCATTAACTTTCTAATCCTCTAGTCCTTGAAACCTCAGAATTGACTTTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAACTTTCTAATCCTCTAGTCCTTGAAACCTCAGAATTGACTTTCT  650

seq1  TCTTCGAGGTACTTTTTTCTTTTCTCCTCCTGCTTCATTTTCTTAAACCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGAGGTACTTTTTTCTTTTCTCCTCCTGCTTCATTTTCTTAAACCC  700

seq1  TAACCCATTAATGACATACCTCAATTAACTGCTTCTTCTTCATTCCTGAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCATTAATGACATACCTCAATTAACTGCTTCTTCTTCATTCCTGAT  750

seq1  TCATCTATTTGGGTCTGGAAACAAAGGGAAACCTATATAAAGAACTACAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATTTGGGTCTGGAAACAAAGGGAAACCTATATAAAGAACTACAC  800

seq1  CAACTATCCCTAAAAGCACAATCTCTTGCACCCCTGGAGATCTCAAAAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATCCCTAAAAGCACAATCTCTTGCACCCCTGGAGATCTCAAAAGA  850

seq1  TGCCCTCCCCAAATTATTTGGTTGTTGGCAGGGGTGTTGGTTGTGGTGGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCCCCAAATTATTTGGTTGTTGGCAGGGGTGTTGGTTGTGGTGGT  900

seq1  ACATCTTATGTGTGTGACGATCAGAGAATAACTTTTAAAAACTGGTTCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTATGTGTGTGACGATCAGAGAATAACTTTTAAAAACTGGTTCTT  950

seq1  CCTTTCCACAGTACATTCAGGGGATGGAATTC  977
      ||||||||||||||||||||||||||||||||
seq2  CCTTTCCACAGTACATTCAGGGGATGGAATTC  982