BAC Information

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BAC

Clone NameB6Ng01-271G16
Chromosome11 (Build37)
Map Location 99,086,083 - 99,203,651
singlet/doubletdoublet
Overlap geneSmarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26
Upstream geneCrkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7
Downstream geneKrt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271G16.bB6Ng01-271G16.g
ACCGA073504GA073505
length1,1321,083
definitionB6Ng01-271G16.b B6Ng01-271G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,086,083 - 99,087,217)(99,202,562 - 99,203,651)
sequence
gaattctacatttgtttacatatatagtatgagcattaagggtccaaggc
tttatccctactgatcaccaagtagaatgggatttcttttcttccaggta
catatccagactgcactttttttttcagtgtaagactgtacaaaatagtt
gaaaagtcaggttaaattttttaaatggctgtgcttctgattcaaaagga
cctagctctggaggcatttctggtcaattccagttgtttgccggaggctg
taatagttgattctcctaccgtgacccggctgttggtgcccgggttccct
cccagcctgtagttgttgtaggcgagatgactgtatggattgtatcccac
aaaccctggtgtgctgggcatttgctgatggaaacaaatgagacaaaaac
acgaatgagaaatgagctcaaacgagggaaacacagaaatgaaaaatgat
ctgcatatggcatgcaaaagcaacctgagtttaaacaagcaatgatggtt
ctaactggtatttgttactgtttcttttttccactgtgaacccagcctgc
aagtctgcacgtgcatgcgtgtatgcatgtctcttctctttcctgctttt
ccttggtgggggttagggatgcttgggagactgagtatgttctgtttcgt
tctgaggaaagcatcacactaccgttgcaaacatctacaactatttcatg
gtcaacagtatgagataatttagcaatctgtgatgtttgagataggaaag
cttcaagtatgataaactttaaagtctgaaaacactacatgcaaacaaaa
catgatttatttgacagttatgtggatgtcaccagtgccctcatttacta
aaaacaaaacaaggaatggatctgctttttccaagacagcgttaaataat
tttctatgtgacaaatgagaagagactgaaatcaggaggccaggactgtc
aataggatagaacatatgctcgattcaatggatgtcacatgcatggtttt
aaaacaaggacttgtaagaaatgcatagatcctcataatggtgctatctg
atcctctaaccacgtcattctttcaatagactttctcttcaatctcttct
tgatcatctcatagtatcatcaacggtttatg
gaattccattgtgagttaaaaccattcctaaaaaattctttacagctttt
atttttttaatgactaaagagttagctcagatttcctcaatggctgggat
gtctgatcaccaagtcacccaaatgaagggaacagactctttctactgga
accaagtagagagaataggtgagcgtactgggtgtacttgtggcttttaa
actgtaacttctaaggaagagtcagtgataacagatcatcggcacctgct
gtgtgctaagcactaggctaagctcttggtccccacaacagcccgatagg
gtggatactgtggtcatcaccggttcatgagtaaggaaactgagtcagag
agcagtggattcattttcccagagtcacacaactaataaccggaggtgct
ggaatccaggcagtctgactcaccgcccgtgcttagccacgacctcacac
catgccggtgagaccaagagctccttggctccccctcctagtggaaaagg
ggttgctagccctaattgtcttctctttcccagaccagagaagccatttg
ggaaggggcttacacaacacaatctgattctcagaagaaatcttgtccca
aagcaaaccactcatgttcaagaagagcattttcctgggcaggcaaggag
gctcagtaggtaaaggcgcttgcagtcaagtctgatagcctgagttggat
ccccagggtctacatggcagaaaggagaaaactgacacccaaaagttatc
ctgtgatctccacatgcctattgcagcactcgaatgcatgctcacatgca
cacacataaacacacacactaaatttatacatacatacaaacataaaatg
ttttttaataaaaatgctcttctagaagagccaacagaaatttaaaatta
tgcatctttaaagttttaattattttctattcatttggagtgagggtgat
atggggtgtagggactcataataccatggaatatgatgtaaatcagagga
caactggctgaacttgctgatgtagtctcttcctccaccatctggattga
actaatatctcaggcttgcatcaagtgccttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_99086083_99087217
seq2: B6Ng01-271G16.b_50_1181

seq1  GAATTCTACATTTGTTTACATATATAGTATGAGCATTAAGGGTCCAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATTTGTTTACATATATAGTATGAGCATTAAGGGTCCAAGGC  50

seq1  TTTATCCCTACTGATCACCAAGTAGAATGGGATTTCTTTTCTTCCAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCCTACTGATCACCAAGTAGAATGGGATTTCTTTTCTTCCAGGTA  100

seq1  CATATCCAGACTGCACTTTTTTTTTCAGTGTAAGACTGTACAAAATAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCAGACTGCACTTTTTTTTTCAGTGTAAGACTGTACAAAATAGTT  150

seq1  GAAAAGTCAGGTTAAATTTTTTAAATGGCTGTGCTTCTGATTCAAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCAGGTTAAATTTTTTAAATGGCTGTGCTTCTGATTCAAAAGGA  200

seq1  CCTAGCTCTGGAGGCATTTCTGGTCAATTCCAGTTGTTTGCCGGAGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTCTGGAGGCATTTCTGGTCAATTCCAGTTGTTTGCCGGAGGCTG  250

seq1  TAATAGTTGATTCTCCTACCGTGACCCGGCTGTTGGTGCCCGGGTTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTTGATTCTCCTACCGTGACCCGGCTGTTGGTGCCCGGGTTCCCT  300

seq1  CCCAGCCTGTAGTTGTTGTAGGCGAGATGACTGTATGGATTGTATCCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTGTAGTTGTTGTAGGCGAGATGACTGTATGGATTGTATCCCAC  350

seq1  AAACCCTGGTGTGCTGGGCATTTGCTGATGGAAACAAATGAGACAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGGTGTGCTGGGCATTTGCTGATGGAAACAAATGAGACAAAAAC  400

seq1  ACGAATGAGAAATGAGCTCAAACGAGGGAAACACAGAAATGAAAAATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATGAGAAATGAGCTCAAACGAGGGAAACACAGAAATGAAAAATGAT  450

seq1  CTGCATATGGCATGCAAAAGCAACCTGAGTTTAAACAAGCAATGATGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATGGCATGCAAAAGCAACCTGAGTTTAAACAAGCAATGATGGTT  500

seq1  CTAACTGGTATTTGTTACTGTTTCTTTTTTCCACTGTGAACCCAGCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGGTATTTGTTACTGTTTCTTTTTTCCACTGTGAACCCAGCCTGC  550

seq1  AAGTCTGCACGTGCATGCGTGTATGCATGTCTCTTCTCTTTCCTGCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGCACGTGCATGCGTGTATGCATGTCTCTTCTCTTTCCTGCTTTT  600

seq1  CCTTGGTGGGGGTTAGGGATGCTTGGGAGACTGAGTATGTTCTGTTTCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTGGGGGTTAGGGATGCTTGGGAGACTGAGTATGTTCTGTTTCGT  650

seq1  TCTGAGGAAAGCATCACACTACCGTTGCAAACATCTACAACTATTTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGAAAGCATCACACTACCGTTGCAAACATCTACAACTATTTCATG  700

seq1  GTCAACAGTATGAGATAATTTAGCAATCTGTGATGTTTGAGATAGGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACAGTATGAGATAATTTAGCAATCTGTGATGTTTGAGATAGGAAAG  750

seq1  CTTCAAGTATGATAAACTTTAAAGTCTGAAAACACTACATGCAAACAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTATGATAAACTTTAAAGTCTGAAAACACTACATGCAAACAAAA  800

seq1  CATGATTTATTTGACAGTTATGTGGATGTCACCAGTGCCCTCATTTACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTATTTGACAGTTATGTGGATGTCACCAGTGCCCTCATTTACTA  850

seq1  AAAACAAAACAAGGAATGGATCTGC-TTTTCCAAGACAGCGTTAAATAAT  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAACAAAACAAGGAATGGATCTGCTTTTTCCAAGACAGCGTTAAATAAT  900

seq1  TTTCTATGTGACAAATGAGAAGAGACTGAAATCAGGAGGCCAGGAACTGT  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTCTATGTGACAAATGAGAAGAGACTGAAATCAGGAGGCCAGG-ACTGT  949

seq1  CAATAGGATAGAACATATGCTCGATTCAATGGATGTCACATGCATGGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGATAGAACATATGCTCGATTCAATGGATGTCACATGCATGGTTT  999

seq1  TAAAACAAGGACTTGTAAGAAATGCATAGAT-CTCATAATGGTGCTATCT  1048
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAAAACAAGGACTTGTAAGAAATGCATAGATCCTCATAATGGTGCTATCT  1049

seq1  GAT-CTCTAACCACGTCATTCTTTC-ATAGACTTTCTCTTCCATCTCTTC  1096
      ||| ||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  GATCCTCTAACCACGTCATTCTTTCAATAGACTTTCTCTTCAATCTCTTC  1099

seq1  TTTGATCCATCTTCCATAGGTAATCATCAACAGTTTATG  1135
       ||||| |||||  |||||   ||||||||| |||||||
seq2  -TTGAT-CATCT--CATAG--TATCATCAACGGTTTATG  1132

seq1: chr11_99202562_99203651
seq2: B6Ng01-271G16.g_69_1151 (reverse)

seq1  TAAAGGCACTTGATGCCAAGCCTGAGGATATGAGTTCAATTCCAGATGGT  50
      ||||||||||||||| ||||||||| ||||| ||||||| ||||||||||
seq2  TAAAGGCACTTGATG-CAAGCCTGA-GATATTAGTTCAA-TCCAGATGGT  47

seq1  GGAAGGAGAGGACTTACATCAGCAAGTTCAGCAAGTTGTCCTCTGATTTT  100
      ||| | ||| ||| |||||||||||||||||| |||||||||||||||| 
seq2  GGAGGAAGA-GAC-TACATCAGCAAGTTCAGCCAGTTGTCCTCTGATTTA  95

seq1  CACACATATGCCATGGTATATTGTGTCCCTACA-CCCATATCCACCCTCA  149
      ||  ||||| |||||||||  || ||||||||| ||||||| ||||||||
seq2  CA-TCATATTCCATGGTATTATGAGTCCCTACACCCCATAT-CACCCTCA  143

seq1  CTCCAAATGAATAGAAAATAATTTAAAACTTTAAAGATGCATAATTTTTA  199
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  CTCCAAATGAATAGAAAATAA-TTAAAACTTTAAAGATGCATAA-TTTTA  191

seq1  AATTTCTGTTGGCTCTTCTAGAAGAGCATTTTTATTAAAAAACATTTTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGTTGGCTCTTCTAGAAGAGCATTTTTATTAAAAAACATTTTAT  241

seq1  GTTTGTATGTATGTATAAATTTAGTGTGTGTGTTTATGTGTGTGCATGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATGTATGTATAAATTTAGTGTGTGTGTTTATGTGTGTGCATGTG  291

seq1  AGCATGCATTCGAGTGCTGCAATAGGCATGTGGAGATCACAGGATAACTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCATTCGAGTGCTGCAATAGGCATGTGGAGATCACAGGATAACTT  341

seq1  TTGGGTGTCAGTTTTCTCC-TTCTGCCATGTAGACCCTGGGGATCCAACT  398
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTGGGTGTCAGTTTTCTCCTTTCTGCCATGTAGACCCTGGGGATCCAACT  391

seq1  CAGGCTATCAGACTTGACTGCAAGCGCCTTTACCTACTGAGCCTCCTTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTATCAGACTTGACTGCAAGCGCCTTTACCTACTGAGCCTCCTTGC  441

seq1  CTGCCCAGGAAAATGCTCTTCTTGAACATGAGTGGTTTGCTTTGGGACAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAGGAAAATGCTCTTCTTGAACATGAGTGGTTTGCTTTGGGACAA  491

seq1  GATTTCTTCTGAGAATCAGATTGTGTTGTGTAAGCCCCTTCCCAAATGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTCTGAGAATCAGATTGTGTTGTGTAAGCCCCTTCCCAAATGGC  541

seq1  TTCTCTGGTCTGGGAAAGAGAAGACAATTAGGGCTAGCAACCCCTTTTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGTCTGGGAAAGAGAAGACAATTAGGGCTAGCAACCCCTTTTCC  591

seq1  ACTAGGAGGGGGAGCCAAGGAGCTCTTGGTCTCACCGGCATGGTGTGAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAGGGGGAGCCAAGGAGCTCTTGGTCTCACCGGCATGGTGTGAGG  641

seq1  TCGTGGCTAAGCACGGGCGGTGAGTCAGACTGCCTGGATTCCAGCACCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGCTAAGCACGGGCGGTGAGTCAGACTGCCTGGATTCCAGCACCTC  691

seq1  CGGTTATTAGTTGTGTGACTCTGGGAAAATGAATCCACTGCTCTCTGACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTATTAGTTGTGTGACTCTGGGAAAATGAATCCACTGCTCTCTGACT  741

seq1  CAGTTTCCTTACTCATGAACCGGTGATGACCACAGTATCCACCCTATCGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCTTACTCATGAACCGGTGATGACCACAGTATCCACCCTATCGG  791

seq1  GCTGTTGTGGGGACCAAGAGCTTAGCCTAGTGCTTAGCACACAGCAGGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGTGGGGACCAAGAGCTTAGCCTAGTGCTTAGCACACAGCAGGTG  841

seq1  CCGATGATCTGTTATCACTGACTCTTCCTTAGAAGTTACAGTTTAAAAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGATCTGTTATCACTGACTCTTCCTTAGAAGTTACAGTTTAAAAGC  891

seq1  CACAAGTACACCCAGTACGCTCACCTATTCTCTCTACTTGGTTCCAGTAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTACACCCAGTACGCTCACCTATTCTCTCTACTTGGTTCCAGTAG  941

seq1  AAAGAGTCTGTTCCCTTCATTTGGGTGACTTGGTGATCAGACATCCCAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCTGTTCCCTTCATTTGGGTGACTTGGTGATCAGACATCCCAGC  991

seq1  CATTGAGGAAATCTGAGCTAACTCTTTAGTCATTAAAAAAATAAAAGCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGGAAATCTGAGCTAACTCTTTAGTCATTAAAAAAATAAAAGCTG  1041

seq1  TAAAGAATTTTTTAGGAATGGTTTTAACTCACAATGGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATTTTTTAGGAATGGTTTTAACTCACAATGGAATTC  1083