BAC Information

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BAC

Clone NameB6Ng01-271J08
Chromosome11 (Build37)
Map Location 37,238,541 - 37,303,346
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz2
Downstream geneLOC100039148, LOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271J08.bB6Ng01-271J08.g
ACCGA073624GA073625
length1,1521,173
definitionB6Ng01-271J08.b B6Ng01-271J08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,238,541 - 37,239,719)(37,302,157 - 37,303,346)
sequence
gaattcattcctttgatgttaattaccaaattgctttcagaaaatcaatt
gagtttcccttcttccttctaaatgtttgtgagatgttttttagtacttt
ctaaggtaaggtgctggagagacagacactgaacactgaaaccggaaggg
ttctaactttccaggtaaaatacagatgagatgtgggagtatgcattttt
agggatagaggtgctaatcaaatgcatgcttccattctgtacaagttacc
ttttctctcagaactgttgtctgcctacttcctgaggaaagggatgaata
aaaatgataagcaaaagtctatgacaaaggaaggttgcaagaactcgtac
ttcaataccactattcttctagtctgttgcactgtcaagtttcccaaggg
caatttgttgagatatatctacagatctatatacctgtctatgtctctac
ctatctatgtaaaagatgcctaccttttggttacattgggtacatataca
taagtttgtagtttccatgttgatgttaataagtgtttgaagatggcaat
atttattcagcaaaggtgcaacattttgaatggccatggaggttttagca
gatgtaaagatgtgtttagaagaatcaaagacagtttataaactctaagc
aagtaaactaatgcaagttgatgaacagtctctaagatgttatatttaaa
gacagctcacaatcttcaagcaaatttcagaaaattggccaaaggatcaa
cagacctcacatgaagggctttcttttctcttcatgtgtcttcctgaggt
ttgctcctgttttactgtgtagatgtagcacgttttaagatgaaattgat
ggaaagacatgaaggatccaagttcatgtgaaggcattcctatctccctg
actagatgacaatttttcaaggtatatattgatgttacccaattctccct
atcaccacaatgaatgggagaaagaattcatgaaataatgtttaaattgg
tttattagttattgataaagattaaactgacatttccaatattgagaacg
aaaactcattaataaacctttattctatttatagtaccaaaataccttag
ataattgaattacggtcaggaatgctaactgtgtcgaaatcctttcagct
ca

gaattccccctttgccctatcagcccacaaaagaaaaattgaatggaaca
ggaaagaatgaactgaatggaagtgtatcttttgcatgtttatacattta
tgtgtatatatgactttgatcacaaaccttcaaaagcaattataccacca
gcaactttgagcccaggcagtggcagaggaggcatcccaaattgtgtcaa
acctgctggtattaagcacacatttaatatgcccaaataaaatggaattc
ataaataagttttgaaaagttagagtaatttttagaatctgaatgcaaag
tgtcggtaggtgtagatttaacttttcatcaatatatctgtttttttgtt
tctgctgtgagaccataatagttattaatctcaatatttctaatgttttt
ttattcttggctacttttctgacatattagttcttagcaagaaaaaaaat
ggcttagtaatagtagacaggaacgtcactatctcttcacagctcactag
gttccgtaatagataatagcgtaattacttttttgagttaaaaaaaaatc
caattggaatgcctgcaggtgtatgtacatttatttggtttggaacttat
ttttttagcataattcatttactatatttggtatgacgggtccaaatgaa
accaagcatccagaggaaattattttttaatacagactcataacccaggt
attaagaatgcttctatttctctcacccacaggcagtaaggcagtttttc
ttctcaaacccattaacttcatctataaagcatatttattctctttctcc
taagatttactcagtttctgtggtagtgttctgtgccttaaaacagaaag
ctaagctgtccacattggtcattcattcactcactgaaaactgacaattg
ctacttgatatcagctatgactttaagcactggggatatagccatgaata
gaggcaaatgcacatctcctgccttctgacactgtcattcaagtagcatt
gcaaagcagaaatgcacgtagtctttccatactgcctcagtatatggcct
catctctgtgtcaattccttgctgaccaccttgtcaggatgcacattatt
ccatatgtgttactaagaagggccattgctggacttcataactatgttca
gcagcagaccatagtaatttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_37238541_37239719
seq2: B6Ng01-271J08.b_44_1195

seq1  GAATTCATTCCTTTGATGTTAATTACCAAATTGCTTTCAGAAAATCAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCTTTGATGTTAATTACCAAATTGCTTTCAGAAAATCAATT  50

seq1  GAGTTTCCCTTCTTCCTTCTAAATGTTTGTGAGATGTTTTTTAGTACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCCCTTCTTCCTTCTAAATGTTTGTGAGATGTTTTTTAGTACTTT  100

seq1  CTAAGGTAAGGTGCTGGAGAGACAGACACTGAACACTGAAACCGGAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTAAGGTGCTGGAGAGACAGACACTGAACACTGAAACCGGAAGGG  150

seq1  TTCTAACTTTCCAGGTAAAATACAGATGAGATGTGGGAGTATGCATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTTTCCAGGTAAAATACAGATGAGATGTGGGAGTATGCATTTTT  200

seq1  AGGGATAGAGGTGCTAATCAAATGCATGCTTCCATTCTGTACAAGTTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAGAGGTGCTAATCAAATGCATGCTTCCATTCTGTACAAGTTACC  250

seq1  TTTTCTCTCAGAACTGTTGTCTGCCTACTTCCTGAGGAAAGGGATGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTCAGAACTGTTGTCTGCCTACTTCCTGAGGAAAGGGATGAATA  300

seq1  AAAATGATAAGCAAAAGTCTATGACAAAGGAAGGTTGCAAGAACTCGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATAAGCAAAAGTCTATGACAAAGGAAGGTTGCAAGAACTCGTAC  350

seq1  TTCAATACCACTATTCTTCTAGTCTGTTGCACTGTCAAGTTTCCCAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATACCACTATTCTTCTAGTCTGTTGCACTGTCAAGTTTCCCAAGGG  400

seq1  CAATTTGTTGAGATATATCTACAGATCTATATACCTGTCTATGTCTCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGTTGAGATATATCTACAGATCTATATACCTGTCTATGTCTCTAC  450

seq1  CTATCTATGTAAAAGATGCCTACCTTTTGGTTACATTGGGTACATATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATGTAAAAGATGCCTACCTTTTGGTTACATTGGGTACATATACA  500

seq1  TAAGTTTGTAGTTTCCATGTTGATGTTAATAAGTGTTTGAAGATGGCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTGTAGTTTCCATGTTGATGTTAATAAGTGTTTGAAGATGGCAAT  550

seq1  ATTTATTCAGCAAAGGTGCAACATTTTGAATGGCCATGGAGGTTTTAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCAGCAAAGGTGCAACATTTTGAATGGCCATGGAGGTTTTAGCA  600

seq1  GATGTAAAGATGTGTTTAGAAGAATCAAAGACAGTTTATAAACTCTAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAAAGATGTGTTTAGAAGAATCAAAGACAGTTTATAAACTCTAAGC  650

seq1  AAGTAAACTAATGCAAGTTGATGAACAGTCTCTAAGATGTTATATTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAACTAATGCAAGTTGATGAACAGTCTCTAAGATGTTATATTTAAA  700

seq1  GACAGCTCACAATCTTCAAGCAAATTTCAGAAAATTGGCCAAAGGATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTCACAATCTTCAAGCAAATTTCAGAAAATTGGCCAAAGGATCAA  750

seq1  CAGACCTCACATGAAGGGCTTTCTTTTCTCTTCATGTGTCTTCCTGAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTCACATGAAGGGCTTTCTTTTCTCTTCATGTGTCTTCCTGAGGT  800

seq1  TTGCTCCTGTTTTACTGTGTAGATGTAGCAGGTTTTAAGATGAAATTGAT  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGCTCCTGTTTTACTGTGTAGATGTAGCACGTTTTAAGATGAAATTGAT  850

seq1  GGAAAGACATGAAGGATCCAAGTTCATGTGAAGGCATTCCTATCTCCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACATGAAGGATCCAAGTTCATGTGAAGGCATTCCTATCTCCCTG  900

seq1  ACTAGATGACAATTTTTCAAAGGTATATATTGATGTTACCCAAATTCTCC  950
      |||||||||||||||||| |||||||||||||||||||||| |||||| |
seq2  ACTAGATGACAATTTTTC-AAGGTATATATTGATGTTACCC-AATTCT-C  947

seq1  CCTATCAACCACAATGAATGGGAGAAAAGAATTCAATGAAATAATGTTTT  1000
      |||||| ||||||||||||||||| ||||||||| ||||||||||| |||
seq2  CCTATC-ACCACAATGAATGGGAG-AAAGAATTC-ATGAAATAATG-TTT  993

seq1  AAATTGGTTTAATTAAGTTATTGATAAAAGGATTAAAACTGACATTTTCA  1050
      |||||||||||  | |||||||||||||  |||| ||||||||| |||| 
seq2  AAATTGGTTTA--TTAGTTATTGATAAA--GATT-AAACTGACA-TTTCC  1037

seq1  AATATTGAGACAGAAAAACTCATTATTAAAACTTTTATCTATTTATAAGT  1100
      |||||||||| |  ||||||||||| |||| ||||  ||||||||| |||
seq2  AATATTGAGA-ACGAAAACTCATTAATAAACCTTTATTCTATTTAT-AGT  1085

seq1  AACAAAAATAACTTTTAGATAAAATGATATAAGGTCAGGAAAAAATGCAT  1150
       || |||||| |  |||||| || |||  || |||||||    ||||| |
seq2  -ACCAAAATACC--TTAGAT-AATTGAATTACGGTCAGG----AATGC-T  1126

seq1  AACTGTGGTCAGAATATCTTTTCAGCTCA  1179
      |||||| ||| ||| ||| ||||||||||
seq2  AACTGT-GTC-GAA-ATCCTTTCAGCTCA  1152


seq1: chr11_37302157_37303346
seq2: B6Ng01-271J08.g_63_1235 (reverse)

seq1  AAAAAATTACTA-GTCCTGCTGCTG-ACATAGTTTATTGGAGTCCCCACC  48
      |||||||||||| |  ||||||||| ||||||||   || |||  ||| |
seq2  AAAAAATTACTATGGTCTGCTGCTGAACATAGTT--ATGAAGT--CCAGC  46

seq1  CATGTGCCTTTCTTAAGTAACACATATGAAATAATGTGCCATCCTGGACA  98
       ||| ||| ||||| ||||||||||||| ||||||||| |||||| ||||
seq2  AATG-GCCCTTCTT-AGTAACACATATGGAATAATGTG-CATCCT-GACA  92

seq1  AAGGGTGGTCAGCAAAGAATTGGCCACAGAGATGAGGCCCATTAATACTG  148
      |  |||||||||||| ||||| | ||||||||||||| ||||  ||||||
seq2  A--GGTGGTCAGCAAGGAATT-GACACAGAGATGAGG-CCAT--ATACTG  136

seq1  AGGCCAGTATTGGAAAGACTACGTGCATTTCTGCTTTTGCAATGCTACTT  198
      ||| ||||| |||||||||||||||||||||||| |||||||||||||||
seq2  AGG-CAGTA-TGGAAAGACTACGTGCATTTCTGC-TTTGCAATGCTACTT  183

seq1  GAATGACAGTTGTCAGAAGGCAGGAGATGTGCATTTGCCTCTATTCATGG  248
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACAG-TGTCAGAAGGCAGGAGATGTGCATTTGCCTCTATTCATGG  232

seq1  CTATATCCCCAGTGCTTAAAGTCATAGCTGATATCAAGTAGCAATTGTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCCCCAGTGCTTAAAGTCATAGCTGATATCAAGTAGCAATTGTCA  282

seq1  GTTTTCAGTGAGTGAATGAATGACCAATGTGGACAGCCTTAGCCTTCTGT  348
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  GTTTTCAGTGAGTGAATGAATGACCAATGTGGACAG-CTTAGCTTTCTGT  331

seq1  TTTAAGGCACAGAACACTACCACAGAAACTGAGTAAATCTTAGGAGAAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGCACAGAACACTACCACAGAAACTGAGTAAATCTTAGGAGAAAG  381

seq1  AGAATAAATATGCCTTATAGATGAAGTTAATGGGTTTGAGAAGAAAAACT  448
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAATAAATATGCTTTATAGATGAAGTTAATGGGTTTGAGAAGAAAAACT  431

seq1  GCCTTACTGCCTGTGGGTGAGAGAAATAGAAGCATTCTTAATACCTGGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACTGCCTGTGGGTGAGAGAAATAGAAGCATTCTTAATACCTGGGT  481

seq1  TATGAGTCTGTATTAAAAAATAATTTCCTCTGGATGCTTGGTTTCATTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTCTGTATTAAAAAATAATTTCCTCTGGATGCTTGGTTTCATTTG  531

seq1  GACCCGTCATACCAAATATAGTAAATGAATTATGCTAAAAAAATAAGTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGTCATACCAAATATAGTAAATGAATTATGCTAAAAAAATAAGTTC  581

seq1  CAAACCAAATAAATGTACATACACCTGCAGGCATTCCAATTGGATTTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAAATAAATGTACATACACCTGCAGGCATTCCAATTGGATTTTTT  631

seq1  TTTAACTCAAAAAAGTAATTACGCTATTATCTATTACGGAACCTAGTGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTCAAAAAAGTAATTACGCTATTATCTATTACGGAACCTAGTGAG  681

seq1  CTGTGAAGAGATAGTGACGTTCCTGTCTACTATTACTAAGCCATTTTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGAGATAGTGACGTTCCTGTCTACTATTACTAAGCCATTTTTTT  731

seq1  TCTTGCTAAGAACTAATATGTCAGAAAAGTAGCCAAGAATAAAAAAACAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTAAGAACTAATATGTCAGAAAAGTAGCCAAGAATAAAAAAACAT  781

seq1  TAGAAATATTGAGATTAATAACTATTATGGTCTCACAGCAGAAACAAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATATTGAGATTAATAACTATTATGGTCTCACAGCAGAAACAAAAA  831

seq1  AACAGATATATTGATGAAAAGTTAAATCTACACCTACCGACACTTTGCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATATATTGATGAAAAGTTAAATCTACACCTACCGACACTTTGCAT  881

seq1  TCAGATTCTAAAAATTACTCTAACTTTTCAAAACTTATTTATGAATTCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTCTAAAAATTACTCTAACTTTTCAAAACTTATTTATGAATTCCA  931

seq1  TTTTATTTGGGCATATTAAATGTGTGCTTAATACCAGCAGGTTTGACACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTGGGCATATTAAATGTGTGCTTAATACCAGCAGGTTTGACACA  981

seq1  ATTTGGGATGCCTCCTCTGCCACTGCCTGGGCTCAAAGTTGCTGGTGGTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGATGCCTCCTCTGCCACTGCCTGGGCTCAAAGTTGCTGGTGGTA  1031

seq1  TAATTGCTTTTGAAGGTTTGTGATCAAAGTCATATATACACATAAATGTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCTTTTGAAGGTTTGTGATCAAAGTCATATATACACATAAATGTA  1081

seq1  TAAACATGCAAAAGATACACTTCCATTCAGTTCATTCTTTCCTGTTCCAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGCAAAAGATACACTTCCATTCAGTTCATTCTTTCCTGTTCCAT  1131

seq1  TCAATTTTTCTTTTGTGGGCTGATAGGGCAAAGGGGGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTTCTTTTGTGGGCTGATAGGGCAAAGGGGGAATTC  1173


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