BAC Information

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BAC

Clone NameB6Ng01-271J09
Chromosome11 (Build37)
Map Location 32,442,111 - 32,579,289
singlet/doubletdoublet
Overlap geneStk10, Fbxw11
Upstream gene2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik
Downstream geneLOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik, Kcnip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271J09.bB6Ng01-271J09.g
ACCGA073626GA073627
length7931,115
definitionB6Ng01-271J09.b B6Ng01-271J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,442,111 - 32,442,901)(32,578,185 - 32,579,289)
sequence
gaattcccacgtgaggtgtggttgaggcctaggtcagagcctagaattgg
caaatgcctagtgcaggggccaccagtgtacaaaggaggtgtatgctgag
ggagagagcgaggggagggtttgggaatgggacttttgctagggtttgag
gctggaaggagtaccttgctctgctcatcctgggttcattcaccgcaaag
gctgcagtaatgatgtaactagacagggttcttgaaggatgtgacagcct
gtggttagtcaccagcatccgggacactgggagctcatggaatagttttt
gaccacttttgcgggaggattcactattatttcattattactgtccactg
tttttctcttctcttcttcagaaaggcaggagatagtcagtacccccact
ctactatacctggtatggcagaggcccagagatggccagtgactttttaa
gtgtcacacagccttttcatggcaggactgagacttaatcccaggtcttt
ctagccctggctctgcaccttttccctgcagagaacagaaggaaagccgt
aggtcatgttaggcagaggaggttgctttcctgtggtgtctgctcatggc
cttgtggattctgtgtctagaaacatgaccttctttctgagccttcttca
agtggatgttgatggtggcctcccctccagaggaagtggtaattgggcag
ggctgcagaggaagtggctgggggcctccagagggcagaagatgatgaag
gtttcttgtcaccatcctgggccctggtgggtgggtggggagg
gaattccaggacagccagtgctacacaaagaaaccctgtctcaaaaaaac
aaaacaaaacaaaacaattaaaagatcaattcagctgggcgtggtggcgc
atgcctttgatcccagcactcaggaggcagaggcaggcggatttctgagt
tcgaggccagcctggtctacaaagtgaggtccaggacagccaggactata
cagagaaaccctgtctcgaaaaaccagaagaaaaaaaaaaattcattgac
tccattctaccattaaaaaaaaacaaacaaactgttgctttcaaaggaat
taataaaatgtaatgtaaaactgagcacatacaatagctaatatatagta
atcatcacactggtatttaataaatatttttaataataaataaataaacc
aaccctgaagataggtgcttgagttctactaaactactctacagatctta
ggccaagccacacttgttcctccagctccctggcttacactagtaacctc
tactacagtcagtgtattataaacaaagaaagctttgcctgaaatcagac
agaccttgggttcgtacccaattcctacttactagctacagctcaactca
taatgtagagaatattgagtttatttaggaaaggcatgtgaatccaggac
acaaaaatcaaagacagcaaatggaataaatagcagcagacctctctaag
caatgaaagccaccacacattccaacctgagtacttattaaaagcttgcc
ttgggagatacagtgggggaactgtctgctgctacaggacagagtctgtt
gtccaaccattttgcaacagaggagaagcaacctcagagagacatgagaa
cagctttgtaaaatacaatgaaagtagctgccatctcttgacctcctcta
cccgtttcctactatgacaactgtcacggtaaagtctcacagtaagtcct
gaagaagcacactatctcggtcttacaggatgatctgtttggaacacagc
ttatctaaggtcataggccatgtgtgaggtgattctattaaattgagctc
tctctacccagaggccgtacacacattaatacacgtactaggtggaaata
gtagttcttatcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_32442111_32442901
seq2: B6Ng01-271J09.b_44_836

seq1  GAATTCCCACGTGAGGTGTGGTTGAGGCCTAGGTCAGAGCCTAGAATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACGTGAGGTGTGGTTGAGGCCTAGGTCAGAGCCTAGAATTGG  50

seq1  CAAATGCCTAGTGCAGGGGCCACCAGTGTACAAAGGAGGTGTATGCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCCTAGTGCAGGGGCCACCAGTGTACAAAGGAGGTGTATGCTGAG  100

seq1  GGAGAGAGCGAGGGGAGGGTTTGGGAATGGGACTTTTGCTAGGGTTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGCGAGGGGAGGGTTTGGGAATGGGACTTTTGCTAGGGTTTGAG  150

seq1  GCTGGAAGGAGTACCTTGCTCTGCTCATCCTGGGTTCATTCACCGCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGGAGTACCTTGCTCTGCTCATCCTGGGTTCATTCACCGCAAAG  200

seq1  GCTGCAGTAATGATGTAACTAGACAGGGTTCTTGAAGGATGTGACAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGTAATGATGTAACTAGACAGGGTTCTTGAAGGATGTGACAGCCT  250

seq1  GTGGTTAGTCACCAGCATCCGGGACACTGGGAGCTCATGGAATAGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAGTCACCAGCATCCGGGACACTGGGAGCTCATGGAATAGTTTTT  300

seq1  GACCACTTTTGCGGGAGGATTCACTATTATTTCATTATTACTGTCCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTTTTGCGGGAGGATTCACTATTATTTCATTATTACTGTCCACTG  350

seq1  TTTTTCTCTTCTCTTCTTCAGAAAGGCAGGAGATAGTCAGTACCCCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTTCTCTTCTTCAGAAAGGCAGGAGATAGTCAGTACCCCCACT  400

seq1  CTACTATACCTGGTATGGCAGAGGCCCAGAGATGGCCAGTGACTTTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATACCTGGTATGGCAGAGGCCCAGAGATGGCCAGTGACTTTTTAA  450

seq1  GTGTCACACAGCCTTTTCATGGCAGGACTGAGACTTAATCCCAGGTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACACAGCCTTTTCATGGCAGGACTGAGACTTAATCCCAGGTCTTT  500

seq1  CTAGCCCTGGCTCTGCACCTTTTCCCTGCAGAGAACAGAAGGAAAGCCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCTGGCTCTGCACCTTTTCCCTGCAGAGAACAGAAGGAAAGCCGT  550

seq1  AGGTCATGTTAGGCAGAGGAGGTTGCTTTCCTGTGGTGTCTGCTCATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATGTTAGGCAGAGGAGGTTGCTTTCCTGTGGTGTCTGCTCATGGC  600

seq1  CTTGTGGATTCTGTGTCTAGAAACATGACCTTCTTTCTGAGCCTTCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGATTCTGTGTCTAGAAACATGACCTTCTTTCTGAGCCTTCTTCA  650

seq1  AGTGGATGTTGATGGTGGCCTCCCCTCCAGAGGAAGTGGTAA-TGGGCAG  699
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTGGATGTTGATGGTGGCCTCCCCTCCAGAGGAAGTGGTAATTGGGCAG  700

seq1  GGCTGCAGAGGAAGTGGCTGGGGGCCTCCAGAGGGCAGAAGATGATGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAGAGGAAGTGGCTGGGGGCCTCCAGAGGGCAGAAGATGATGAAG  750

seq1  G-TTCTTGTCACCATCCTGGGCCCTGGTGGGTGGGTGGGGAGG  791
      | |||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGTCACCATCCTGGGCCCTGGTGGGTGGGTGGGGAGG  793

seq1: chr11_32578185_32579289
seq2: B6Ng01-271J09.g_64_1178 (reverse)

seq1  TCTGAT-AGAACTACTATTT-CAACTAGTATGTGTAATAATGTGTGTAAC  48
      |||||| ||||||||||||| || |||||| ||||| |||||||||||  
seq2  TCTGATAAGAACTACTATTTCCACCTAGTACGTGTATTAATGTGTGTA--  48

seq1  GGGGCCTCTGGGT--AGAGAGCTCATTTTAATAGAATCA-CTCACA---T  92
        |||||||||||  |||||||||| ||||||||||||| ||||||    
seq2  -CGGCCTCTGGGTAGAGAGAGCTCAATTTAATAGAATCACCTCACACATG  97

seq1  GCCTATGGACCTTAGAT-AGCTGGTGTT-CAAACAGATCAT-CTGT-AGA  138
      |||||| |||||||||| |||| ||||| |||||||||||| |||| |||
seq2  GCCTAT-GACCTTAGATAAGCT-GTGTTCCAAACAGATCATCCTGTAAGA  145

seq1  CCGAGATAGTGTGC-TCTTCAGGACTTACTGTGAGACTTTACCGTGACAG  187
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCGAGATAGTGTGCTTCTTCAGGACTTACTGTGAGACTTTACCGTGACAG  195

seq1  TTGTCATAGTAGGAACGGGTTAGAGGAGGTCAAGAGATGGCAGCTACTTT  237
      |||||||||||||||  || ||||||||||||||||||||||||||||||
seq2  TTGTCATAGTAGGAAACGGGTAGAGGAGGTCAAGAGATGGCAGCTACTTT  245

seq1  CATTGTATTTTACAAAGCTGTTCTCATGTCTCTCTGAGGTTGCTTCT-CT  286
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATTGTATTTTACAAAGCTGTTCTCATGTCTCTCTGAGGTTGCTTCTCCT  295

seq1  CTGTTGCAAAATGGTTGGACAACAGACTCTGTCCTGTAGCAGCAGACAGT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCAAAATGGTTGGACAACAGACTCTGTCCTGTAGCAGCAGACAGT  345

seq1  T-CCCCACTGTATCTCCCAAGGCAAGCTTTTAATAAGTACTCAGGTTGGA  385
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACTGTATCTCCCAAGGCAAGCTTTTAATAAGTACTCAGGTTGGA  395

seq1  ATGTGTGGTGGCTTTCATTGCTTAGAGAGGTCTGCTGCTATTTATTCCAT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGTGGCTTTCATTGCTTAGAGAGGTCTGCTGCTATTTATTCCAT  445

seq1  TTGCTGTCTTTGATTTTTGTGTCCTGGATTCACATGCCTTTCCTAAATAA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTCTTTGATTTTTGTGTCCTGGATTCACATGCCTTTCCTAAATAA  495

seq1  ACTCAATATTCTCTACATTATGAGTTGAGCTGTAGCTAGTAAGTAGGAAT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATATTCTCTACATTATGAGTTGAGCTGTAGCTAGTAAGTAGGAAT  545

seq1  TGGGTACGAACCCAAGGTCTGTCTGATTTCAGGCAAAGCTTTCTTTGTTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACGAACCCAAGGTCTGTCTGATTTCAGGCAAAGCTTTCTTTGTTT  595

seq1  ATAATACACTGACTGTAGTAGAGGTTACTAGTGTAAGCCAGGGAGCTGGA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACACTGACTGTAGTAGAGGTTACTAGTGTAAGCCAGGGAGCTGGA  645

seq1  GGAACAAGTGTGGCTTGGCCTAAGATCTGTAGAGTAGTTTAGTAGAACTC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAGTGTGGCTTGGCCTAAGATCTGTAGAGTAGTTTAGTAGAACTC  695

seq1  AAGCACCTATCTTCAGGGTTGGTTTATTTATTTATTATTAAAAATATTTA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCTATCTTCAGGGTTGGTTTATTTATTTATTATTAAAAATATTTA  745

seq1  TTAAATACCAGTGTGATGATTACTATATATTAGCTATTGTATGTGCTCAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACCAGTGTGATGATTACTATATATTAGCTATTGTATGTGCTCAG  795

seq1  TTTTACATTACATTTTATTAATTCCTTTGAAAGCAACAGTTTGTTTGTTT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATTACATTTTATTAATTCCTTTGAAAGCAACAGTTTGTTTGTTT  845

seq1  TTTTTTAATGGTAGAATGGAGTCAATGAATTTTTTTTTTTCTTCTGGTTT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATGGTAGAATGGAGTCAATGAATTTTTTTTTTTCTTCTGGTTT  895

seq1  TTCGAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGACCTCACTTT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGACCTCACTTT  945

seq1  GTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTG  995

seq1  AGTGCTGGGATCAAAGGCATGCGCCACCACGCCCAGCTGAATTGATCTTT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGATCAAAGGCATGCGCCACCACGCCCAGCTGAATTGATCTTT  1045

seq1  TAATTGTTTTGTTTTGTTTTGTTTTTTTGAGACAGGGTTTCTTTGTGTAG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTTTGTTTTGTTTTGTTTTTTTGAGACAGGGTTTCTTTGTGTAG  1095

seq1  CACTGGCTGTCCTGGAATTC  1105
      ||||||||||||||||||||
seq2  CACTGGCTGTCCTGGAATTC  1115