BAC Information

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BAC

Clone NameB6Ng01-271N03
Chromosome11 (Build37)
Map Location 28,151,162 - 28,289,553
singlet/doubletdoublet
Overlap geneEG626571, Ccdc85a
Upstream geneLOC100042377
Downstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271N03.bB6Ng01-271N03.g
ACCGA073802GA073803
length1,232117
definitionB6Ng01-271N03.b B6Ng01-271N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,288,343 - 28,289,553)(28,151,162 - 28,151,278)
sequence
gaattctttagtagctcattagcagagttgtatgatgaccacatctccca
cactgcaaaaattaggaaactaagattatattagaatttatgtggctcaa
gaatacaaactgacttttctaaatgaattagacattgcatctcttgttat
agctgtattttatagaagccagtttgctcttttaaccaaggggtcttgat
tctaaatgcacatggaaattactttgggaactttaattaaatatacagat
accactacctcctttctgccagcatcctcagaatttctgcatgtggtgat
tactgttaactcagggctgaggaccactcagatagctagcatgagatgtt
atgtctttttaaaataccagccctggttgctggagtaaagtatagcaccc
tagctgctgacaagttcttgggtttcaaaagttgtcaccatcacaaagtt
gtcactatcatgctttactttgtgtttcaacccacccatgtggagagtct
gtctcgtctttgcacccatctttgaacctctcatagtcttctctgaaaat
cacatctgtttctgcaagataacacctaattttactcacctctttttttt
ttaaggttgtgtggaggaaacttggagatgctgcaggctcctgtcctgga
attaggcaacatttgtcaggaaaccagtacaaagggcctatgtgaaaagc
actgccttcaaacatgacatcatcactactagagacagcagaaaaagaag
acaaagaagaaattcagtttctacaaaataaaactcatgacatcacatgg
agtgattgtacattgctcatatctcccttctaaatcctttagtgtacctt
ctcccatacagctaatatgtgctataagtctcaactttagtgttcatagc
agtctcaaggtagctttggaaaatcgttttagtattaatgaaagtattaa
tttcatgaaagctgaaatgttttgactcttcacacccatgattgacatat
tgggtagtctgcatggttggatgagtccagtagagtcccttgtggcttga
atagaggtggttcattaatatctaatggtaggagcttcttactggtggtg
gaagatatgaaaagtatttttgagagcatacaaccttggggttgggaaag
ctcctcctcataatatattagacagttgaaggaagattgtctctccctgt
agtgcaaattatagttcggagatgcaagataa

attgattcgtttatttcctctttaatggcctctatcacattcataaagtt
gcttttaaggtttttgttgttttgttttgtatttttgttgttgttatttt
tgttttggggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_28288343_28289553
seq2: B6Ng01-271N03.b_45_1276 (reverse)

seq1  TTATCTTGCAT---CCAACTA-AATTTGCA--TCAGGAAG---CAATCTT  41
      |||||||||||   | ||||| ||||||||   |||| ||   |||||||
seq2  TTATCTTGCATCTCCGAACTATAATTTGCACTACAGGGAGAGACAATCTT  50

seq1  TCCTCAACTG-CT-ATATA-TATGAG--GGAGC-TTCCCAACCC--AGGT  83
       | ||||||| || ||||| ||||||  ||||| ||||||||||  ||||
seq2  CCTTCAACTGTCTAATATATTATGAGGAGGAGCTTTCCCAACCCCAAGGT  100

seq1  TGTATG--CTCAAAAATACTTTTTCATATCTTCCAC--ACAGTAGAAAGC  129
      ||||||  ||||||||||| ||||||||||||||||   |||||  ||||
seq2  TGTATGCTCTCAAAAATAC-TTTTCATATCTTCCACCACCAGTAAGAAGC  149

seq1  TCCTACCATTAGATA-TAATGAACCACCTCTATCAAAGCCAC-AGGGACT  177
      ||||||||||||||| |||||||||||||||||  ||||||| |||||||
seq2  TCCTACCATTAGATATTAATGAACCACCTCTATTCAAGCCACAAGGGACT  199

seq1  CTACTGGACTCATCCAACCATGCAGACTACCCAATATGTCAATCATGGTT  227
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTACTGGACTCATCCAACCATGCAGACTACCCAATATGTCAATCATGGGT  249

seq1  GTGAAGAGTCAAAAACATTTCAGCTTTCATGAAATTAATACTTTCATTAA  277
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGTC-AAAACATTTCAGCTTTCATGAAATTAATACTTTCATTAA  298

seq1  TACTAAAACGATTTTCCAAAGCTACCTTGAGACTGCTATGAACACTAAAG  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAACGATTTTCCAAAGCTACCTTGAGACTGCTATGAACACTAAAG  348

seq1  TTGAGACTTATAGCACATATTAGCTGTATGGGAGAAGGTACACTAAAGGA  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACTTATAGCACATATTAGCTGTATGGGAGAAGGTACACTAAAGGA  398

seq1  TTTAGAAGGGAGATATGAGCAATGTACAATCACTCCATGTGATGTCATGA  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGGGAGATATGAGCAATGTACAATCACTCCATGTGATGTCATGA  448

seq1  GTTTTATTTTGTAGAAACTGAATTTCTTCTTTGTCTTCTTTTTCTGCTGT  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTTGTAGAAACTGAATTTCTTCTTTGTCTTCTTTTTCTGCTGT  498

seq1  CTCTAGTAGTGATGATGTCATGTTTGAAGGCAGTGCTTTTCACATAGGCC  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTAGTGATGATGTCATGTTTGAAGGCAGTGCTTTTCACATAGGCC  548

seq1  CTTTGTACTGGTTTCCTGACAAATGTTGCCTAATTCCAGGACAGGAGCCT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTACTGGTTTCCTGACAAATGTTGCCTAATTCCAGGACAGGAGCCT  598

seq1  GCAGCATCTCCAAGTTTCCTCCACACAACCTTAAAAAAAAAAGAGGTGAG  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATCTCCAAGTTTCCTCCACACAACCTTAAAAAAAAAAGAGGTGAG  648

seq1  TAAAATTAGGTGTTATCTTGCAGAAACAGATGTGATTTTCAGAGAAGACT  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAGGTGTTATCTTGCAGAAACAGATGTGATTTTCAGAGAAGACT  698

seq1  ATGAGAGGTTCAAAGATGGGTGCAAAGACGAGACAGACTCTCCACATGGG  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGGTTCAAAGATGGGTGCAAAGACGAGACAGACTCTCCACATGGG  748

seq1  TGGGTTGAAACACAAAGTAAAGCATGATAGTGACAACTTTGTGATGGTGA  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGAAACACAAAGTAAAGCATGATAGTGACAACTTTGTGATGGTGA  798

seq1  CAACTTTTGAAACCCAAGAACTTGTCAGCAGCTAGGGTGCTATACTTTAC  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTGAAACCCAAGAACTTGTCAGCAGCTAGGGTGCTATACTTTAC  848

seq1  TCCAGCAACCAGGGCTGGTATTTTAAAAAGACATAACATCTCATGCTAGC  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAACCAGGGCTGGTATTTTAAAAAGACATAACATCTCATGCTAGC  898

seq1  TATCTGAGTGGTCCTCAGCCCTGAGTTAACAGTAATCACCACATGCAGAA  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGTGGTCCTCAGCCCTGAGTTAACAGTAATCACCACATGCAGAA  948

seq1  ATTCTGAGGATGCTGGCAGAAAGGAGGTAGTGGTATCTGTATATTTAATT  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGGATGCTGGCAGAAAGGAGGTAGTGGTATCTGTATATTTAATT  998

seq1  AAAGTTCCCAAAGTAATTTCCATGTGCATTTAGAATCAAGACCCCTTGGT  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCCAAAGTAATTTCCATGTGCATTTAGAATCAAGACCCCTTGGT  1048

seq1  TAAAAGAGCAAACTGGCTTCTATAAAATACAGCTATAACAAGAGATGCAA  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGCAAACTGGCTTCTATAAAATACAGCTATAACAAGAGATGCAA  1098

seq1  TGTCTAATTCATTTAGAAAAGTCAGTTTGTATTCTTGAGCCACATAAATT  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATTCATTTAGAAAAGTCAGTTTGTATTCTTGAGCCACATAAATT  1148

seq1  CTAATATAATCTTAGTTTCCTAATTTTTGCAGTGTGGGAGATGTGGTCAT  1177
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATAATCTTAGTTTCCTAATTTTTGCAGTGTGGGAGATGTGGTCAT  1198

seq1  CATACAACTCTGCTAATGAGCTACTAAAGAATTC  1211
      ||||||||||||||||||||||||||||||||||
seq2  CATACAACTCTGCTAATGAGCTACTAAAGAATTC  1232


seq1: chr11_28151162_28151278
seq2: B6Ng01-271N03.g_71_187

seq1  ATTGATTCGTTTATTTCCTCTTTAATGGCCTCTATCACATTCATAAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTCGTTTATTTCCTCTTTAATGGCCTCTATCACATTCATAAAGTT  50

seq1  GCTTTTAAGGTTTTTGTTGTTTTGTTTTGTATTTTTGTTGTTGTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAGGTTTTTGTTGTTTTGTTTTGTATTTTTGTTGTTGTTATTTT  100

seq1  TGTTTTGGGGGGTGGGG  117
      |||||||||||||||||
seq2  TGTTTTGGGGGGTGGGG  117


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